RNA–Protein interactions for RNA: ENST00000450303.6

PRPF40A-204, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-204ENST00000450303 TECPR2O15040 1411 aa24.86■■□□□ 1.57
PRPF40A-204ENST00000450303 SHPRHQ149N8 1683 aa24.85■■□□□ 1.57
PRPF40A-204ENST00000450303 DCAF11Q8TEB1 546 aa24.85■■□□□ 1.57
PRPF40A-204ENST00000450303 KNDC1Q76NI1 1749 aa24.85■■□□□ 1.57
PRPF40A-204ENST00000450303 SPATA31A6Q5VVP1 1343 aa24.85■■□□□ 1.57
PRPF40A-204ENST00000450303 LRP6O75581 1613 aa24.84■■□□□ 1.57
PRPF40A-204ENST00000450303 NUTM2BA6NNL0 878 aaPredicted RBP24.84■■□□□ 1.57
PRPF40A-204ENST00000450303 NUTM2EB1AL46 878 aaPredicted RBP24.84■■□□□ 1.57
PRPF40A-204ENST00000450303 POTEAQ6S8J7 498 aa24.84■■□□□ 1.57
PRPF40A-204ENST00000450303 NUTM2AQ8IVF1 878 aaPredicted RBP24.84■■□□□ 1.57
PRPF40A-204ENST00000450303 NUTM2FA1L443 756 aa24.83■■□□□ 1.57
PRPF40A-204ENST00000450303 DHX57Q6P158 1386 aaKnown RBP24.82■■□□□ 1.56
PRPF40A-204ENST00000450303 MEX3CQ5U5Q3 659 aaKnown RBP24.82■■□□□ 1.56
PRPF40A-204ENST00000450303 LRRC59Q96AG4 307 aaKnown RBP24.82■■□□□ 1.56
PRPF40A-204ENST00000450303 LAMC1P11047 1609 aa24.81■■□□□ 1.56
PRPF40A-204ENST00000450303 CDC42BPGQ6DT37 1551 aa24.8■■□□□ 1.56
PRPF40A-204ENST00000450303 ESCO1Q5FWF5 840 aa24.8■■□□□ 1.56
PRPF40A-204ENST00000450303 SAFB2Q14151 953 aaKnown RBP eCLIP24.78■■□□□ 1.56
PRPF40A-204ENST00000450303 SIRT1Q96EB6 747 aa24.76■■□□□ 1.55
PRPF40A-204ENST00000450303 PRAM1Q96QH2 718 aa24.75■■□□□ 1.55
PRPF40A-204ENST00000450303 PNPLA6Q8IY17 1366 aa24.74■■□□□ 1.55
PRPF40A-204ENST00000450303 SOS2Q07890 1332 aaPredicted RBP24.73■■□□□ 1.55
PRPF40A-204ENST00000450303 TRAK1Q9UPV9 953 aa24.73■■□□□ 1.55
PRPF40A-204ENST00000450303 FMN2Q9NZ56 1722 aa24.72■■□□□ 1.55
PRPF40A-204ENST00000450303 XPCQ01831 940 aaPredicted RBP24.72■■□□□ 1.55
PRPF40A-204ENST00000450303 POGKQ9P215 609 aa24.72■■□□□ 1.55
PRPF40A-204ENST00000450303 ADGRB1O14514 1584 aa24.71■■□□□ 1.55
PRPF40A-204ENST00000450303 FOXO3O43524 673 aa24.71■■□□□ 1.55
PRPF40A-204ENST00000450303 RGPD8O14715 1765 aaPredicted RBP24.7■■□□□ 1.54
PRPF40A-204ENST00000450303 STAC3Q96MF2 364 aa24.69■■□□□ 1.54
PRPF40A-204ENST00000450303 NPHP3Q7Z494 1330 aa24.68■■□□□ 1.54
PRPF40A-204ENST00000450303 DLC1Q96QB1 1528 aa24.67■■□□□ 1.54
PRPF40A-204ENST00000450303 ZNF772Q68DY9 489 aaPredicted RBP24.66■■□□□ 1.54
PRPF40A-204ENST00000450303 ADAMTS2O95450 1211 aa24.65■■□□□ 1.54
PRPF40A-204ENST00000450303 C8orf37Q96NL8 207 aa24.65■■□□□ 1.54
PRPF40A-204ENST00000450303 HIRIP3Q9BW71 556 aaPredicted RBP24.65■■□□□ 1.54
PRPF40A-204ENST00000450303 AFF2P51816 1311 aa24.64■■□□□ 1.54
PRPF40A-204ENST00000450303 PXDNQ92626 1479 aa24.64■■□□□ 1.53
PRPF40A-204ENST00000450303 MINK1Q8N4C8 1332 aaPredicted RBP24.63■■□□□ 1.53
PRPF40A-204ENST00000450303 SIN3AQ96ST3 1273 aa24.6■■□□□ 1.53
PRPF40A-204ENST00000450303 PHF8Q9UPP1 1060 aa24.6■■□□□ 1.53
PRPF40A-204ENST00000450303 KIF1AQ12756 1690 aa24.59■■□□□ 1.53
PRPF40A-204ENST00000450303 KRT28Q7Z3Y7 464 aa24.59■■□□□ 1.53
PRPF40A-204ENST00000450303 NGLY1Q96IV0 654 aa24.58■■□□□ 1.53
PRPF40A-204ENST00000450303 PMFBP1Q8TBY8 1022 aa24.57■■□□□ 1.52
PRPF40A-204ENST00000450303 USP32Q8NFA0 1604 aa24.57■■□□□ 1.52
PRPF40A-204ENST00000450303 COL22A1Q8NFW1 1626 aaPredicted RBP24.57■■□□□ 1.52
PRPF40A-204ENST00000450303 ARHGEF28Q8N1W1 1705 aaKnown RBP24.56■■□□□ 1.52
PRPF40A-204ENST00000450303 NEUROD1Q13562 356 aa24.56■■□□□ 1.52
PRPF40A-204ENST00000450303 NBPF1Q3BBV0 1214 aa24.56■■□□□ 1.52
PRPF40A-204ENST00000450303 ADGRB2O60241 1585 aa24.55■■□□□ 1.52
PRPF40A-204ENST00000450303 RXRBP28702 533 aa24.55■■□□□ 1.52
PRPF40A-204ENST00000450303 CCER1Q8TC90 406 aaPredicted RBP24.54■■□□□ 1.52
PRPF40A-204ENST00000450303 WASLO00401 505 aaPredicted RBP24.53■■□□□ 1.52
PRPF40A-204ENST00000450303 L3MBTL2Q969R5 705 aa24.53■■□□□ 1.52
PRPF40A-204ENST00000450303 QTRT2Q9H974 415 aaKnown RBP24.53■■□□□ 1.52
PRPF40A-204ENST00000450303 SPATA31A3Q5VYP0 1347 aa24.53■■□□□ 1.52
PRPF40A-204ENST00000450303 KIAA1210Q9ULL0 1709 aa24.52■■□□□ 1.52
PRPF40A-204ENST00000450303 PLEKHG5O94827 1062 aa24.52■■□□□ 1.52
PRPF40A-204ENST00000450303 PSME1Q06323 249 aa24.52■■□□□ 1.52
PRPF40A-204ENST00000450303 PRR36Q9H6K5 1346 aa24.52■■□□□ 1.52
PRPF40A-204ENST00000450303 ANKARQ7Z5J8 1434 aa24.52■■□□□ 1.52
PRPF40A-204ENST00000450303 LMOD2Q6P5Q4 547 aa24.49■■□□□ 1.51
PRPF40A-204ENST00000450303 USP21Q9UK80 565 aa24.48■■□□□ 1.51
PRPF40A-204ENST00000450303 TULP4Q9NRJ4 1543 aa24.47■■□□□ 1.51
PRPF40A-204ENST00000450303 MARF1Q9Y4F3 1742 aaKnown RBP24.47■■□□□ 1.51
PRPF40A-204ENST00000450303 CLSPNQ9HAW4 1339 aa24.46■■□□□ 1.51
PRPF40A-204ENST00000450303 TNS3Q68CZ2 1445 aa24.45■■□□□ 1.51
PRPF40A-204ENST00000450303 EIF3AQ14152 1382 aaKnown RBP24.45■■□□□ 1.5
PRPF40A-204ENST00000450303 CABLES1Q8TDN4 633 aa24.45■■□□□ 1.5
PRPF40A-204ENST00000450303 RBM6P78332 1123 aaKnown RBP24.44■■□□□ 1.5
PRPF40A-204ENST00000450303 FNBP4Q8N3X1 1017 aaPredicted RBP24.44■■□□□ 1.5
PRPF40A-204ENST00000450303 CDK19Q9BWU1 502 aa24.44■■□□□ 1.5
PRPF40A-204ENST00000450303 NUDT16Q96DE0 195 aaKnown RBP24.43■■□□□ 1.5
PRPF40A-204ENST00000450303 SBNO1A3KN83 1393 aa24.42■■□□□ 1.5
PRPF40A-204ENST00000450303 HAP1P54257 671 aaPredicted RBP24.42■■□□□ 1.5
PRPF40A-204ENST00000450303 NGDNQ8NEJ9 315 aaKnown RBP24.42■■□□□ 1.5
PRPF40A-204ENST00000450303 TRPC5Q9UL62 973 aaPredicted RBP24.4■■□□□ 1.5
PRPF40A-204ENST00000450303 GPRASP1Q5JY77 1395 aa24.4■■□□□ 1.5
PRPF40A-204ENST00000450303 ATP7BP35670 1465 aa24.38■■□□□ 1.49
PRPF40A-204ENST00000450303 CDK12Q9NYV4 1490 aaPredicted RBP24.38■■□□□ 1.49
PRPF40A-204ENST00000450303 TRPM3Q9HCF6 1732 aaPredicted RBP24.38■■□□□ 1.49
PRPF40A-204ENST00000450303 CENPJQ9HC77 1338 aaPredicted RBP24.37■■□□□ 1.49
PRPF40A-204ENST00000450303 RGS12O14924 1447 aa24.37■■□□□ 1.49
PRPF40A-204ENST00000450303 ITSN1Q15811 1721 aa24.37■■□□□ 1.49
PRPF40A-204ENST00000450303 ARHGEF10O15013 1369 aa24.37■■□□□ 1.49
PRPF40A-204ENST00000450303 BCL9LQ86UU0 1499 aa24.37■■□□□ 1.49
PRPF40A-204ENST00000450303 TRPM1Q7Z4N2 1603 aa24.36■■□□□ 1.49
PRPF40A-204ENST00000450303 PAK3O75914 559 aaPredicted RBP24.36■■□□□ 1.49
PRPF40A-204ENST00000450303 ATRNO75882 1429 aa24.35■■□□□ 1.49
PRPF40A-204ENST00000450303 ABCA3Q99758 1704 aa24.34■■□□□ 1.49
PRPF40A-204ENST00000450303 QRICH2Q9H0J4 1663 aa24.34■■□□□ 1.49
PRPF40A-204ENST00000450303 SRPK2P78362 688 aaKnown RBP24.33■■□□□ 1.49
PRPF40A-204ENST00000450303 NBPF8Q3BBV2 869 aa24.33■■□□□ 1.49
PRPF40A-204ENST00000450303 ALS2Q96Q42 1657 aa24.33■■□□□ 1.49
PRPF40A-204ENST00000450303 UPF1Q92900 1129 aaKnown RBP eCLIP24.32■■□□□ 1.48
PRPF40A-204ENST00000450303 CABP2Q9NPB3 220 aa24.32■■□□□ 1.48
PRPF40A-204ENST00000450303 CCDC61Q9Y6R9 512 aa24.32■■□□□ 1.48
PRPF40A-204ENST00000450303 UNC5CLQ8IV45 518 aa24.31■■□□□ 1.48
PRPF40A-204ENST00000450303 TOPAZ1Q8N9V7 1692 aa24.3■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms