RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 SPATA31E1Q6ZUB1 1445 aa10.44□□□□□ -0.74
VPS41-208ENST00000448833 LRPPRCP42704 1394 aaKnown RBP10.44□□□□□ -0.74
VPS41-208ENST00000448833 RXRBP28702 533 aa10.44□□□□□ -0.74
VPS41-208ENST00000448833 ABCC11Q96J66 1382 aa10.43□□□□□ -0.74
VPS41-208ENST00000448833 SIRT1Q96EB6 747 aa10.43□□□□□ -0.74
VPS41-208ENST00000448833 STAC3Q96MF2 364 aa10.43□□□□□ -0.74
VPS41-208ENST00000448833 LRP6O75581 1613 aa10.43□□□□□ -0.74
VPS41-208ENST00000448833 KNDC1Q76NI1 1749 aa10.42□□□□□ -0.74
VPS41-208ENST00000448833 SOS2Q07890 1332 aaPredicted RBP10.42□□□□□ -0.74
VPS41-208ENST00000448833 NPHP3Q7Z494 1330 aa10.42□□□□□ -0.74
VPS41-208ENST00000448833 ADGRF5Q8IZF2 1346 aa10.42□□□□□ -0.74
VPS41-208ENST00000448833 CDC42BPGQ6DT37 1551 aa10.42□□□□□ -0.74
VPS41-208ENST00000448833 TECPR2O15040 1411 aa10.41□□□□□ -0.74
VPS41-208ENST00000448833 PNPLA6Q8IY17 1366 aa10.41□□□□□ -0.74
VPS41-208ENST00000448833 HRCP23327 699 aa10.41□□□□□ -0.74
VPS41-208ENST00000448833 ESCO1Q5FWF5 840 aa10.41□□□□□ -0.74
VPS41-208ENST00000448833 STK26Q9P289 416 aa10.41□□□□□ -0.74
VPS41-208ENST00000448833 CDK12Q9NYV4 1490 aaPredicted RBP10.41□□□□□ -0.74
VPS41-208ENST00000448833 PIK3C2GO75747 1445 aa10.41□□□□□ -0.74
VPS41-208ENST00000448833 DHX57Q6P158 1386 aaKnown RBP10.4□□□□□ -0.74
VPS41-208ENST00000448833 AFF2P51816 1311 aa10.4□□□□□ -0.74
VPS41-208ENST00000448833 NGLY1Q96IV0 654 aa10.4□□□□□ -0.74
VPS41-208ENST00000448833 C8orf37Q96NL8 207 aa10.4□□□□□ -0.74
VPS41-208ENST00000448833 ORAI2Q96SN7 254 aa10.4□□□□□ -0.74
VPS41-208ENST00000448833 C14orf93Q9H972 538 aaKnown RBP10.4□□□□□ -0.74
VPS41-208ENST00000448833 RBM6P78332 1123 aaKnown RBP10.39□□□□□ -0.75
VPS41-208ENST00000448833 YTHDC2Q9H6S0 1430 aaKnown RBP10.39□□□□□ -0.75
VPS41-208ENST00000448833 MYOM2P54296 1465 aa10.38□□□□□ -0.75
VPS41-208ENST00000448833 COL22A1Q8NFW1 1626 aaPredicted RBP10.38□□□□□ -0.75
VPS41-208ENST00000448833 TMEM132EQ6IEE7 984 aa10.38□□□□□ -0.75
VPS41-208ENST00000448833 DDX17Q92841 729 aaKnown RBP10.38□□□□□ -0.75
VPS41-208ENST00000448833 QTRT2Q9H974 415 aaKnown RBP10.38□□□□□ -0.75
VPS41-208ENST00000448833 RAB3GAP2Q9H2M9 1393 aa10.38□□□□□ -0.75
VPS41-208ENST00000448833 KIF1AQ12756 1690 aa10.38□□□□□ -0.75
VPS41-208ENST00000448833 WAPLQ7Z5K2 1190 aa10.37□□□□□ -0.75
VPS41-208ENST00000448833 MARF1Q9Y4F3 1742 aaKnown RBP10.37□□□□□ -0.75
VPS41-208ENST00000448833 FMN2Q9NZ56 1722 aa10.36□□□□□ -0.75
VPS41-208ENST00000448833 FOXO3O43524 673 aa10.36□□□□□ -0.75
VPS41-208ENST00000448833 ADAMTS2O95450 1211 aa10.36□□□□□ -0.75
VPS41-208ENST00000448833 PSME1Q06323 249 aa10.36□□□□□ -0.75
VPS41-208ENST00000448833 TRPC5Q9UL62 973 aaPredicted RBP10.36□□□□□ -0.75
VPS41-208ENST00000448833 NRXN1Q9ULB1 1477 aa10.36□□□□□ -0.75
VPS41-208ENST00000448833 FNBP4Q8N3X1 1017 aaPredicted RBP10.35□□□□□ -0.75
VPS41-208ENST00000448833 POGKQ9P215 609 aa10.35□□□□□ -0.75
VPS41-208ENST00000448833 USP21Q9UK80 565 aa10.35□□□□□ -0.75
VPS41-208ENST00000448833 RGPD8O14715 1765 aaPredicted RBP10.34□□□□□ -0.75
VPS41-208ENST00000448833 CFAP70Q5T0N1 1121 aa10.34□□□□□ -0.75
VPS41-208ENST00000448833 UPF1Q92900 1129 aaKnown RBP eCLIP10.34□□□□□ -0.75
VPS41-208ENST00000448833 DCAF8L1A6NGE4 600 aa10.33□□□□□ -0.76
VPS41-208ENST00000448833 EIF3AQ14152 1382 aaKnown RBP10.33□□□□□ -0.76
VPS41-208ENST00000448833 PXDNQ92626 1479 aa10.33□□□□□ -0.76
VPS41-208ENST00000448833 DLC1Q96QB1 1528 aa10.33□□□□□ -0.76
VPS41-208ENST00000448833 NUTM2FA1L443 756 aa10.32□□□□□ -0.76
VPS41-208ENST00000448833 KRT28Q7Z3Y7 464 aa10.32□□□□□ -0.76
VPS41-208ENST00000448833 DCAF11Q8TEB1 546 aa10.32□□□□□ -0.76
VPS41-208ENST00000448833 PRAM1Q96QH2 718 aa10.32□□□□□ -0.76
VPS41-208ENST00000448833 PHF8Q9UPP1 1060 aa10.32□□□□□ -0.76
VPS41-208ENST00000448833 SPATA31A3Q5VYP0 1347 aa10.32□□□□□ -0.76
VPS41-208ENST00000448833 PLEKHH1Q9ULM0 1364 aa10.31□□□□□ -0.76
VPS41-208ENST00000448833 HAP1P54257 671 aaPredicted RBP10.31□□□□□ -0.76
VPS41-208ENST00000448833 RNF39Q9H2S5 420 aa10.3□□□□□ -0.76
VPS41-208ENST00000448833 KDM2AQ9Y2K7 1162 aa10.3□□□□□ -0.76
VPS41-208ENST00000448833 ANKARQ7Z5J8 1434 aa10.3□□□□□ -0.76
VPS41-208ENST00000448833 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.3□□□□□ -0.76
VPS41-208ENST00000448833 SBNO1A3KN83 1393 aa10.29□□□□□ -0.76
VPS41-208ENST00000448833 ARHGEF10O15013 1369 aa10.29□□□□□ -0.76
VPS41-208ENST00000448833 ATAD2Q6PL18 1390 aa10.29□□□□□ -0.76
VPS41-208ENST00000448833 XPCQ01831 940 aaPredicted RBP10.29□□□□□ -0.76
VPS41-208ENST00000448833 CCDC125Q86Z20 511 aa10.29□□□□□ -0.76
VPS41-208ENST00000448833 TRAK1Q9UPV9 953 aa10.29□□□□□ -0.76
VPS41-208ENST00000448833 ADGRB2O60241 1585 aa10.28□□□□□ -0.76
VPS41-208ENST00000448833 RGS12O14924 1447 aa10.28□□□□□ -0.76
VPS41-208ENST00000448833 SAFB2Q14151 953 aaKnown RBP eCLIP10.28□□□□□ -0.76
VPS41-208ENST00000448833 RNF216Q9NWF9 866 aaPredicted RBP10.28□□□□□ -0.76
VPS41-208ENST00000448833 GPRASP1Q5JY77 1395 aa10.27□□□□□ -0.76
VPS41-208ENST00000448833 ATRNO75882 1429 aa10.27□□□□□ -0.77
VPS41-208ENST00000448833 TNS3Q68CZ2 1445 aa10.27□□□□□ -0.77
VPS41-208ENST00000448833 UNC5CLQ8IV45 518 aa10.27□□□□□ -0.77
VPS41-208ENST00000448833 GJD4Q96KN9 370 aaPredicted RBP10.27□□□□□ -0.77
VPS41-208ENST00000448833 BCL9LQ86UU0 1499 aa10.27□□□□□ -0.77
VPS41-208ENST00000448833 ITSN1Q15811 1721 aa10.27□□□□□ -0.77
VPS41-208ENST00000448833 NWD2Q9ULI1 1742 aa10.27□□□□□ -0.77
VPS41-208ENST00000448833 KIAA1210Q9ULL0 1709 aa10.27□□□□□ -0.77
VPS41-208ENST00000448833 ADGRB1O14514 1584 aa10.26□□□□□ -0.77
VPS41-208ENST00000448833 LMOD2Q6P5Q4 547 aa10.26□□□□□ -0.77
VPS41-208ENST00000448833 USP32Q8NFA0 1604 aa10.25□□□□□ -0.77
VPS41-208ENST00000448833 WASLO00401 505 aaPredicted RBP10.25□□□□□ -0.77
VPS41-208ENST00000448833 TULP4Q9NRJ4 1543 aa10.24□□□□□ -0.77
VPS41-208ENST00000448833 NGDNQ8NEJ9 315 aaKnown RBP10.24□□□□□ -0.77
VPS41-208ENST00000448833 PMFBP1Q8TBY8 1022 aa10.24□□□□□ -0.77
VPS41-208ENST00000448833 MINK1Q8N4C8 1332 aaPredicted RBP10.24□□□□□ -0.77
VPS41-208ENST00000448833 EP400Q96L91 3159 aa10.24□□□□□ -0.77
VPS41-208ENST00000448833 SLIT2O94813 1529 aa10.23□□□□□ -0.77
VPS41-208ENST00000448833 HIRIP3Q9BW71 556 aaPredicted RBP10.23□□□□□ -0.77
VPS41-208ENST00000448833 ARHGEF28Q8N1W1 1705 aaKnown RBP10.23□□□□□ -0.77
VPS41-208ENST00000448833 VPS72Q15906 364 aa10.22□□□□□ -0.77
VPS41-208ENST00000448833 PLCH1Q4KWH8 1693 aa10.22□□□□□ -0.77
VPS41-208ENST00000448833 ABCA3Q99758 1704 aa10.21□□□□□ -0.77
VPS41-208ENST00000448833 TRPM3Q9HCF6 1732 aaPredicted RBP10.21□□□□□ -0.77
VPS41-208ENST00000448833 CCDC9Q9Y3X0 531 aaKnown RBP10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms