RNA–Protein interactions for RNA: ENST00000447439.6

KLHL3-202, Transcript of kelch like family member 3, humanhuman

TSL 1 (best)

Gene KLHL3, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL3-202ENST00000447439 E9PSI1 815 aa12.27□□□□□ -0.44
KLHL3-202ENST00000447439 FRMPD1Q5SYB0 1578 aa12.27□□□□□ -0.45
KLHL3-202ENST00000447439 NEFMP07197 916 aa12.26□□□□□ -0.45
KLHL3-202ENST00000447439 TCP11L2Q8N4U5 519 aa12.26□□□□□ -0.45
KLHL3-202ENST00000447439 ADGRB3O60242 1522 aa12.26□□□□□ -0.45
KLHL3-202ENST00000447439 C8orf34Q49A92 452 aa12.25□□□□□ -0.45
KLHL3-202ENST00000447439 NRXN1Q9ULB1 1477 aa12.25□□□□□ -0.45
KLHL3-202ENST00000447439 POGZQ7Z3K3 1410 aa12.25□□□□□ -0.45
KLHL3-202ENST00000447439 CLUAP1Q96AJ1 413 aa12.24□□□□□ -0.45
KLHL3-202ENST00000447439 MYO3AQ8NEV4 1616 aa12.24□□□□□ -0.45
KLHL3-202ENST00000447439 RIMBP3CA6NJZ7 1639 aa12.24□□□□□ -0.45
KLHL3-202ENST00000447439 RIMBP3BA6NNM3 1639 aa12.24□□□□□ -0.45
KLHL3-202ENST00000447439 RIMBP3Q9UFD9 1639 aa12.24□□□□□ -0.45
KLHL3-202ENST00000447439 IDI1Q13907 227 aa12.23□□□□□ -0.45
KLHL3-202ENST00000447439 U2AF1L5P0DN76 240 aaPredicted RBP12.23□□□□□ -0.45
KLHL3-202ENST00000447439 U2AF1Q01081 240 aaKnown RBP eCLIP12.23□□□□□ -0.45
KLHL3-202ENST00000447439 POLR3AO14802 1390 aaPredicted RBP12.22□□□□□ -0.45
KLHL3-202ENST00000447439 ADGRB1O14514 1584 aa12.22□□□□□ -0.45
KLHL3-202ENST00000447439 RLBP1P12271 317 aa12.22□□□□□ -0.45
KLHL3-202ENST00000447439 FAM161AQ3B820 660 aa12.22□□□□□ -0.45
KLHL3-202ENST00000447439 GGNBP2Q9H3C7 697 aa12.22□□□□□ -0.45
KLHL3-202ENST00000447439 SRPK2P78362 688 aaKnown RBP12.22□□□□□ -0.45
KLHL3-202ENST00000447439 RUNDC1Q96C34 613 aa12.22□□□□□ -0.45
KLHL3-202ENST00000447439 QRICH2Q9H0J4 1663 aa12.22□□□□□ -0.45
KLHL3-202ENST00000447439 LMTK2Q8IWU2 1503 aa12.21□□□□□ -0.45
KLHL3-202ENST00000447439 MINK1Q8N4C8 1332 aaPredicted RBP12.21□□□□□ -0.45
KLHL3-202ENST00000447439 ABCC3O15438 1527 aa12.21□□□□□ -0.46
KLHL3-202ENST00000447439 CGNL1Q0VF96 1302 aa12.2□□□□□ -0.46
KLHL3-202ENST00000447439 SBNO2Q9Y2G9 1366 aa12.2□□□□□ -0.46
KLHL3-202ENST00000447439 U2SURPO15042 1029 aaKnown RBP12.2□□□□□ -0.46
KLHL3-202ENST00000447439 TSR2Q969E8 191 aaKnown RBP12.2□□□□□ -0.46
KLHL3-202ENST00000447439 SLC24A1O60721 1099 aa12.2□□□□□ -0.46
KLHL3-202ENST00000447439 FBXO31Q5XUX0 539 aaPredicted RBP12.2□□□□□ -0.46
KLHL3-202ENST00000447439 CFAP74Q9C0B2 1584 aa12.19□□□□□ -0.46
KLHL3-202ENST00000447439 FBLN1P23142 703 aa12.19□□□□□ -0.46
KLHL3-202ENST00000447439 RARSP54136 660 aaKnown RBP12.19□□□□□ -0.46
KLHL3-202ENST00000447439 EVC2Q86UK5 1308 aa12.19□□□□□ -0.46
KLHL3-202ENST00000447439 SIGLEC1Q9BZZ2 1709 aa12.19□□□□□ -0.46
KLHL3-202ENST00000447439 SEC24BO95487 1268 aa12.19□□□□□ -0.46
KLHL3-202ENST00000447439 SHPRHQ149N8 1683 aa12.19□□□□□ -0.46
KLHL3-202ENST00000447439 SETBP1Q9Y6X0 1596 aa12.19□□□□□ -0.46
KLHL3-202ENST00000447439 PPLO60437 1756 aa12.19□□□□□ -0.46
KLHL3-202ENST00000447439 ZC3H13Q5T200 1668 aaKnown RBP12.18□□□□□ -0.46
KLHL3-202ENST00000447439 TULP4Q9NRJ4 1543 aa12.18□□□□□ -0.46
KLHL3-202ENST00000447439 HECW2Q9P2P5 1572 aa12.18□□□□□ -0.46
KLHL3-202ENST00000447439 YEATS2Q9ULM3 1422 aa12.18□□□□□ -0.46
KLHL3-202ENST00000447439 MLH3Q9UHC1 1453 aa12.18□□□□□ -0.46
KLHL3-202ENST00000447439 VGFO15240 615 aaPredicted RBP12.18□□□□□ -0.46
KLHL3-202ENST00000447439 PCDHB15Q9Y5E8 787 aa12.18□□□□□ -0.46
KLHL3-202ENST00000447439 CFAP53Q96M91 514 aa12.17□□□□□ -0.46
KLHL3-202ENST00000447439 GLI2P10070 1586 aa12.17□□□□□ -0.46
KLHL3-202ENST00000447439 PRAM1Q96QH2 718 aa12.17□□□□□ -0.46
KLHL3-202ENST00000447439 CYB5RLQ6IPT4 315 aa12.16□□□□□ -0.46
KLHL3-202ENST00000447439 DDRGK1Q96HY6 314 aa12.16□□□□□ -0.46
KLHL3-202ENST00000447439 DAXXQ9UER7 740 aaPredicted RBP12.16□□□□□ -0.46
KLHL3-202ENST00000447439 A0A1W2PP64 1363 aa12.16□□□□□ -0.46
KLHL3-202ENST00000447439 RPGRIP1LQ68CZ1 1315 aa12.15□□□□□ -0.46
KLHL3-202ENST00000447439 DNAJC5Q9H3Z4 198 aa12.15□□□□□ -0.46
KLHL3-202ENST00000447439 IQSEC2Q5JU85 1478 aa12.15□□□□□ -0.46
KLHL3-202ENST00000447439 PDE3AQ14432 1141 aa12.15□□□□□ -0.46
KLHL3-202ENST00000447439 ANKRD36BQ8N2N9 1353 aa12.15□□□□□ -0.47
KLHL3-202ENST00000447439 PPM1GO15355 546 aaPredicted RBP12.14□□□□□ -0.47
KLHL3-202ENST00000447439 POGKQ9P215 609 aa12.14□□□□□ -0.47
KLHL3-202ENST00000447439 CAMSAP1Q5T5Y3 1602 aa12.14□□□□□ -0.47
KLHL3-202ENST00000447439 NEXMIFQ5QGS0 1516 aa12.14□□□□□ -0.47
KLHL3-202ENST00000447439 PRKCSHP14314 528 aaPredicted RBP12.13□□□□□ -0.47
KLHL3-202ENST00000447439 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.13□□□□□ -0.47
KLHL3-202ENST00000447439 USP32Q8NFA0 1604 aa12.13□□□□□ -0.47
KLHL3-202ENST00000447439 EXOSC9Q06265 439 aaKnown RBP12.13□□□□□ -0.47
KLHL3-202ENST00000447439 NFKBIBQ15653 356 aa12.13□□□□□ -0.47
KLHL3-202ENST00000447439 MLECQ14165 292 aa12.12□□□□□ -0.47
KLHL3-202ENST00000447439 WDR63Q8IWG1 891 aa12.12□□□□□ -0.47
KLHL3-202ENST00000447439 FYB1O15117 783 aa12.12□□□□□ -0.47
KLHL3-202ENST00000447439 DIP2CQ9Y2E4 1556 aa12.12□□□□□ -0.47
KLHL3-202ENST00000447439 USP19O94966 1318 aa12.11□□□□□ -0.47
KLHL3-202ENST00000447439 WAPLQ7Z5K2 1190 aa12.11□□□□□ -0.47
KLHL3-202ENST00000447439 CABP1Q9NZU7 370 aa12.11□□□□□ -0.47
KLHL3-202ENST00000447439 STAG3Q9UJ98 1225 aa12.11□□□□□ -0.47
KLHL3-202ENST00000447439 ARHGEF28Q8N1W1 1705 aaKnown RBP12.11□□□□□ -0.47
KLHL3-202ENST00000447439 PDZRN3Q9UPQ7 1066 aa12.11□□□□□ -0.47
KLHL3-202ENST00000447439 PIK3C2BO00750 1634 aa12.1□□□□□ -0.47
KLHL3-202ENST00000447439 NGEFQ8N5V2 710 aa12.1□□□□□ -0.47
KLHL3-202ENST00000447439 IL27Q8NEV9 243 aa12.1□□□□□ -0.47
KLHL3-202ENST00000447439 RTN4Q9NQC3 1192 aaKnown RBP12.1□□□□□ -0.47
KLHL3-202ENST00000447439 SMC4Q9NTJ3 1288 aa12.1□□□□□ -0.47
KLHL3-202ENST00000447439 TRIM35Q9UPQ4 493 aa12.1□□□□□ -0.47
KLHL3-202ENST00000447439 CDK19Q9BWU1 502 aa12.1□□□□□ -0.47
KLHL3-202ENST00000447439 MYH16Q9H6N6 1097 aa12.1□□□□□ -0.47
KLHL3-202ENST00000447439 TMPOP42166 694 aaKnown RBP12.09□□□□□ -0.47
KLHL3-202ENST00000447439 FTSJ3Q8IY81 847 aaKnown RBP12.09□□□□□ -0.47
KLHL3-202ENST00000447439 PLEKHF1Q96S99 279 aa12.09□□□□□ -0.47
KLHL3-202ENST00000447439 FRAT2O75474 233 aaPredicted RBP12.09□□□□□ -0.47
KLHL3-202ENST00000447439 SSH1Q8WYL5 1049 aa12.08□□□□□ -0.48
KLHL3-202ENST00000447439 MAPK8IP3Q9UPT6 1336 aa12.08□□□□□ -0.48
KLHL3-202ENST00000447439 RIPK4P57078 832 aa12.08□□□□□ -0.48
KLHL3-202ENST00000447439 THUMPD2Q9BTF0 503 aaKnown RBP12.08□□□□□ -0.48
KLHL3-202ENST00000447439 ABCC11Q96J66 1382 aa12.07□□□□□ -0.48
KLHL3-202ENST00000447439 CCDC27Q2M243 656 aa12.07□□□□□ -0.48
KLHL3-202ENST00000447439 ITPRIPQ8IWB1 547 aa12.07□□□□□ -0.48
KLHL3-202ENST00000447439 MYO5BQ9ULV0 1848 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms