RNA–Protein interactions for RNA: ENST00000447232.6

PMS1-215, Transcript of PMS1 homolog 1, mismatch repair system component, humanhuman

TSL 2 BASIC

Gene PMS1, Length 2,576 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMS1-215ENST00000447232 LRP5O75197 1615 aa5.7□□□□□ -1.5
PMS1-215ENST00000447232 NLRP1Q9C000 1473 aa5.69□□□□□ -1.5
PMS1-215ENST00000447232 ATP7AQ04656 1500 aa5.69□□□□□ -1.5
PMS1-215ENST00000447232 COL16A1Q07092 1604 aaPredicted RBP5.69□□□□□ -1.5
PMS1-215ENST00000447232 PREX2Q70Z35 1606 aa5.69□□□□□ -1.5
PMS1-215ENST00000447232 RBM33Q96EV2 1170 aaKnown RBP5.69□□□□□ -1.5
PMS1-215ENST00000447232 ERBB3P21860 1342 aa5.69□□□□□ -1.5
PMS1-215ENST00000447232 SPATA31A6Q5VVP1 1343 aa5.69□□□□□ -1.5
PMS1-215ENST00000447232 RGS12O14924 1447 aa5.69□□□□□ -1.5
PMS1-215ENST00000447232 PZPP20742 1482 aa5.69□□□□□ -1.5
PMS1-215ENST00000447232 LRRC9Q6ZRR7 1453 aa5.69□□□□□ -1.5
PMS1-215ENST00000447232 FAM135AQ9P2D6 1515 aa5.69□□□□□ -1.5
PMS1-215ENST00000447232 A2MP01023 1474 aa5.68□□□□□ -1.5
PMS1-215ENST00000447232 MAP3K1Q13233 1512 aa5.68□□□□□ -1.5
PMS1-215ENST00000447232 FGD6Q6ZV73 1430 aa5.68□□□□□ -1.5
PMS1-215ENST00000447232 ARSIQ5FYB1 569 aa5.68□□□□□ -1.5
PMS1-215ENST00000447232 FBXO31Q5XUX0 539 aaPredicted RBP5.68□□□□□ -1.5
PMS1-215ENST00000447232 INO80Q9ULG1 1556 aaPredicted RBP5.68□□□□□ -1.5
PMS1-215ENST00000447232 TROQ12816 1431 aaPredicted RBP5.68□□□□□ -1.5
PMS1-215ENST00000447232 GGT6Q6P531 493 aa5.67□□□□□ -1.5
PMS1-215ENST00000447232 MIA2Q96PC5 1412 aa5.67□□□□□ -1.5
PMS1-215ENST00000447232 NKX1-1Q15270 411 aaPredicted RBP5.67□□□□□ -1.5
PMS1-215ENST00000447232 SHPRHQ149N8 1683 aa5.66□□□□□ -1.5
PMS1-215ENST00000447232 MMRN1Q13201 1228 aa5.66□□□□□ -1.5
PMS1-215ENST00000447232 VARS2Q5ST30 1063 aaKnown RBP5.66□□□□□ -1.5
PMS1-215ENST00000447232 KHSRPQ92945 711 aaKnown RBP eCLIP5.66□□□□□ -1.58e-10■■□□□ 12.3
PMS1-215ENST00000447232 TMEM94Q12767 1356 aa5.66□□□□□ -1.5
PMS1-215ENST00000447232 TMC2Q8TDI7 906 aa5.65□□□□□ -1.5
PMS1-215ENST00000447232 SPAG9O60271 1321 aaKnown RBP5.65□□□□□ -1.5
PMS1-215ENST00000447232 MEX3CQ5U5Q3 659 aaKnown RBP5.65□□□□□ -1.51
PMS1-215ENST00000447232 ATAD2Q6PL18 1390 aa5.65□□□□□ -1.51
PMS1-215ENST00000447232 CDK11AQ9UQ88 783 aaPredicted RBP5.64□□□□□ -1.51
PMS1-215ENST00000447232 EP400Q96L91 3159 aa5.64□□□□□ -1.51
PMS1-215ENST00000447232 ADGBQ8N7X0 1667 aa5.64□□□□□ -1.51
PMS1-215ENST00000447232 SCAF11Q99590 1463 aaKnown RBP5.64□□□□□ -1.51
PMS1-215ENST00000447232 SLC34A2O95436 690 aa5.64□□□□□ -1.51
PMS1-215ENST00000447232 CLIP1P30622 1438 aa5.64□□□□□ -1.51
PMS1-215ENST00000447232 CDC42BPAQ5VT25 1732 aa5.64□□□□□ -1.51
PMS1-215ENST00000447232 SYCP2Q9BX26 1530 aa5.64□□□□□ -1.51
PMS1-215ENST00000447232 TIAM1Q13009 1591 aa5.64□□□□□ -1.51
PMS1-215ENST00000447232 ARHGAP23Q9P227 1491 aa5.63□□□□□ -1.51
PMS1-215ENST00000447232 AFF2P51816 1311 aa5.63□□□□□ -1.51
PMS1-215ENST00000447232 NUTM2BA6NNL0 878 aaPredicted RBP5.63□□□□□ -1.51
PMS1-215ENST00000447232 NUTM2EB1AL46 878 aaPredicted RBP5.63□□□□□ -1.51
PMS1-215ENST00000447232 RBM6P78332 1123 aaKnown RBP5.63□□□□□ -1.51
PMS1-215ENST00000447232 NUTM2DQ5VT03 806 aaPredicted RBP5.63□□□□□ -1.51
PMS1-215ENST00000447232 NUTM2AQ8IVF1 878 aaPredicted RBP5.63□□□□□ -1.51
PMS1-215ENST00000447232 ZNF687Q8N1G0 1237 aa5.63□□□□□ -1.51
PMS1-215ENST00000447232 AHDC1Q5TGY3 1603 aaPredicted RBP5.63□□□□□ -1.51
PMS1-215ENST00000447232 PRDM15P57071 1507 aaPredicted RBP5.63□□□□□ -1.51
PMS1-215ENST00000447232 UBR1Q8IWV7 1749 aa5.63□□□□□ -1.51
PMS1-215ENST00000447232 SLAIN2Q9P270 581 aa5.62□□□□□ -1.51
PMS1-215ENST00000447232 DIP2AQ14689 1571 aa5.62□□□□□ -1.51
PMS1-215ENST00000447232 ABCC3O15438 1527 aa5.62□□□□□ -1.51
PMS1-215ENST00000447232 SLIT1O75093 1534 aa5.62□□□□□ -1.51
PMS1-215ENST00000447232 NHSL1Q5SYE7 1610 aa5.62□□□□□ -1.51
PMS1-215ENST00000447232 NWD1Q149M9 1564 aa5.62□□□□□ -1.51
PMS1-215ENST00000447232 ZNF316A6NFI3 1004 aaPredicted RBP5.61□□□□□ -1.51
PMS1-215ENST00000447232 LTKP29376 864 aa5.61□□□□□ -1.51
PMS1-215ENST00000447232 CCDC125Q86Z20 511 aa5.61□□□□□ -1.51
PMS1-215ENST00000447232 GPHNQ9NQX3 736 aaPredicted RBP5.61□□□□□ -1.51
PMS1-215ENST00000447232 PCDHGA4Q9Y5G9 962 aa5.61□□□□□ -1.51
PMS1-215ENST00000447232 LRRIQ1Q96JM4 1722 aa5.61□□□□□ -1.51
PMS1-215ENST00000447232 KIAA1107Q9UPP5 1409 aa5.61□□□□□ -1.51
PMS1-215ENST00000447232 NCOA2Q15596 1464 aa5.61□□□□□ -1.51
PMS1-215ENST00000447232 NUDT7P0C024 238 aa5.61□□□□□ -1.51
PMS1-215ENST00000447232 FOXK1P85037 733 aa5.61□□□□□ -1.51
PMS1-215ENST00000447232 NKTRP30414 1462 aaKnown RBP5.61□□□□□ -1.51
PMS1-215ENST00000447232 QTRT2Q9H974 415 aaKnown RBP5.61□□□□□ -1.51
PMS1-215ENST00000447232 KCNA6P17658 529 aa5.6□□□□□ -1.51
PMS1-215ENST00000447232 RANGAP1P46060 587 aaPredicted RBP5.6□□□□□ -1.51
PMS1-215ENST00000447232 KDM5AP29375 1690 aaKnown RBP5.6□□□□□ -1.51
PMS1-215ENST00000447232 MSH6P52701 1360 aa5.6□□□□□ -1.51
PMS1-215ENST00000447232 YY1P25490 414 aa5.6□□□□□ -1.51
PMS1-215ENST00000447232 HNRNPMP52272 730 aaKnown RBP eCLIP5.6□□□□□ -1.514e-6■■■■□ 23.6
PMS1-215ENST00000447232 RYDENQ9NUL5 291 aaKnown RBP5.6□□□□□ -1.51
PMS1-215ENST00000447232 DHX29Q7Z478 1369 aaKnown RBP5.59□□□□□ -1.51
PMS1-215ENST00000447232 FMN1Q68DA7 1419 aa5.59□□□□□ -1.51
PMS1-215ENST00000447232 DSG2Q14126 1118 aa5.59□□□□□ -1.51
PMS1-215ENST00000447232 PROSER2Q86WR7 435 aaPredicted RBP5.59□□□□□ -1.51
PMS1-215ENST00000447232 PLPP6Q8IY26 295 aa5.59□□□□□ -1.51
PMS1-215ENST00000447232 GTPBP6O43824 516 aaPredicted RBP5.59□□□□□ -1.52
PMS1-215ENST00000447232 PTCD2Q8WV60 388 aaKnown RBP5.59□□□□□ -1.52
PMS1-215ENST00000447232 TET3O43151 1660 aa5.58□□□□□ -1.52
PMS1-215ENST00000447232 ERVK-7P63135 1459 aa5.58□□□□□ -1.52
PMS1-215ENST00000447232 BCL9LQ86UU0 1499 aa5.58□□□□□ -1.52
PMS1-215ENST00000447232 PLEKHH2Q8IVE3 1493 aa5.58□□□□□ -1.52
PMS1-215ENST00000447232 TXNDC2Q86VQ3 553 aa5.58□□□□□ -1.52
PMS1-215ENST00000447232 NGLY1Q96IV0 654 aa5.58□□□□□ -1.52
PMS1-215ENST00000447232 LHX6Q9UPM6 363 aa5.58□□□□□ -1.52
PMS1-215ENST00000447232 WASHC2CQ9Y4E1 1318 aa5.58□□□□□ -1.52
PMS1-215ENST00000447232 CAMSAP2Q08AD1 1489 aa5.58□□□□□ -1.52
PMS1-215ENST00000447232 GPATCH8Q9UKJ3 1502 aaKnown RBP5.58□□□□□ -1.52
PMS1-215ENST00000447232 RTEL1-TNFRSF6BF6WH68 1400 aa5.57□□□□□ -1.52
PMS1-215ENST00000447232 ZNF777Q9ULD5 760 aaPredicted RBP5.57□□□□□ -1.52
PMS1-215ENST00000447232 SETD5Q9C0A6 1442 aa5.56□□□□□ -1.52
PMS1-215ENST00000447232 MAST1Q9Y2H9 1570 aa5.56□□□□□ -1.52
PMS1-215ENST00000447232 KIF3BO15066 747 aa5.56□□□□□ -1.52
PMS1-215ENST00000447232 HRCP23327 699 aa5.56□□□□□ -1.52
PMS1-215ENST00000447232 CRISPLD2Q9H0B8 497 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms