RNA–Protein interactions for RNA: ENST00000447182.6

SDCBP-204, Transcript of syndecan binding protein, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SDCBP, Length 2,103 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-204ENST00000447182 RUNDC1Q96C34 613 aa24.6■■□□□ 1.53
SDCBP-204ENST00000447182 QRICH2Q9H0J4 1663 aa24.59■■□□□ 1.53
SDCBP-204ENST00000447182 USP19O94966 1318 aa24.58■■□□□ 1.53
SDCBP-204ENST00000447182 PPLO60437 1756 aa24.58■■□□□ 1.53
SDCBP-204ENST00000447182 MORC1Q86VD1 984 aa24.58■■□□□ 1.53
SDCBP-204ENST00000447182 ADGRB1O14514 1584 aa24.57■■□□□ 1.52
SDCBP-204ENST00000447182 WDR63Q8IWG1 891 aa24.57■■□□□ 1.52
SDCBP-204ENST00000447182 ZMYM3Q14202 1370 aa24.57■■□□□ 1.52
SDCBP-204ENST00000447182 CANXP27824 592 aaKnown RBP24.56■■□□□ 1.52
SDCBP-204ENST00000447182 NCBP3Q53F19 620 aaKnown RBP24.56■■□□□ 1.52
SDCBP-204ENST00000447182 PANK1Q8TE04 598 aa24.56■■□□□ 1.52
SDCBP-204ENST00000447182 COG6Q9Y2V7 657 aa24.56■■□□□ 1.52
SDCBP-204ENST00000447182 RARSP54136 660 aaKnown RBP24.56■■□□□ 1.52
SDCBP-204ENST00000447182 C14orf93Q9H972 538 aaKnown RBP24.56■■□□□ 1.52
SDCBP-204ENST00000447182 CCDC27Q2M243 656 aa24.55■■□□□ 1.52
SDCBP-204ENST00000447182 ZNF518AQ6AHZ1 1483 aa24.54■■□□□ 1.52
SDCBP-204ENST00000447182 PMFBP1Q8TBY8 1022 aa24.53■■□□□ 1.52
SDCBP-204ENST00000447182 TCP11L2Q8N4U5 519 aa24.53■■□□□ 1.52
SDCBP-204ENST00000447182 SLC12A5Q9H2X9 1139 aa24.52■■□□□ 1.52
SDCBP-204ENST00000447182 FRAT1Q92837 279 aaPredicted RBP24.51■■□□□ 1.51
SDCBP-204ENST00000447182 PUS7Q96PZ0 661 aaKnown RBP24.51■■□□□ 1.51
SDCBP-204ENST00000447182 TRAK1Q9UPV9 953 aa24.5■■□□□ 1.51
SDCBP-204ENST00000447182 NLRP1Q9C000 1473 aa24.5■■□□□ 1.51
SDCBP-204ENST00000447182 RPGRIP1LQ68CZ1 1315 aa24.5■■□□□ 1.51
SDCBP-204ENST00000447182 NPATQ14207 1427 aa24.49■■□□□ 1.51
SDCBP-204ENST00000447182 FRAT2O75474 233 aaPredicted RBP24.49■■□□□ 1.51
SDCBP-204ENST00000447182 NSD2O96028 1365 aa24.47■■□□□ 1.51
SDCBP-204ENST00000447182 CFAP53Q96M91 514 aa24.47■■□□□ 1.51
SDCBP-204ENST00000447182 ASXL2Q76L83 1435 aa24.47■■□□□ 1.51
SDCBP-204ENST00000447182 MTHFSP49914 203 aa24.46■■□□□ 1.51
SDCBP-204ENST00000447182 NEUROD2Q15784 382 aa24.46■■□□□ 1.51
SDCBP-204ENST00000447182 RRP7AQ9Y3A4 280 aaKnown RBP24.46■■□□□ 1.51
SDCBP-204ENST00000447182 SEC24BO95487 1268 aa24.46■■□□□ 1.51
SDCBP-204ENST00000447182 TNNT2P45379 298 aaPredicted RBP24.45■■□□□ 1.5
SDCBP-204ENST00000447182 BECN1Q14457 450 aa24.45■■□□□ 1.5
SDCBP-204ENST00000447182 PCDHB15Q9Y5E8 787 aa24.44■■□□□ 1.5
SDCBP-204ENST00000447182 ADGRB2O60241 1585 aa24.44■■□□□ 1.5
SDCBP-204ENST00000447182 CHGAP10645 457 aaKnown RBP24.44■■□□□ 1.5
SDCBP-204ENST00000447182 RLBP1P12271 317 aa24.44■■□□□ 1.5
SDCBP-204ENST00000447182 MYH16Q9H6N6 1097 aa24.43■■□□□ 1.5
SDCBP-204ENST00000447182 FRMPD1Q5SYB0 1578 aa24.43■■□□□ 1.5
SDCBP-204ENST00000447182 ANKRD36BQ8N2N9 1353 aa24.42■■□□□ 1.5
SDCBP-204ENST00000447182 HECW2Q9P2P5 1572 aa24.42■■□□□ 1.5
SDCBP-204ENST00000447182 GLI2P10070 1586 aa24.42■■□□□ 1.5
SDCBP-204ENST00000447182 MLH3Q9UHC1 1453 aa24.41■■□□□ 1.5
SDCBP-204ENST00000447182 BRPF3Q9ULD4 1205 aa24.4■■□□□ 1.5
SDCBP-204ENST00000447182 ARHGEF28Q8N1W1 1705 aaKnown RBP24.4■■□□□ 1.5
SDCBP-204ENST00000447182 TULP4Q9NRJ4 1543 aa24.4■■□□□ 1.5
SDCBP-204ENST00000447182 CT47B1P0C2W7 299 aaPredicted RBP24.4■■□□□ 1.5
SDCBP-204ENST00000447182 TMEM132EQ6IEE7 984 aa24.4■■□□□ 1.5
SDCBP-204ENST00000447182 RWDD1Q9H446 243 aaPredicted RBP24.4■■□□□ 1.5
SDCBP-204ENST00000447182 EVC2Q86UK5 1308 aa24.39■■□□□ 1.5
SDCBP-204ENST00000447182 CFAP65Q6ZU64 1925 aaKnown RBP24.39■■□□□ 1.49
SDCBP-204ENST00000447182 CFAP74Q9C0B2 1584 aa24.39■■□□□ 1.49
SDCBP-204ENST00000447182 PDZRN3Q9UPQ7 1066 aa24.38■■□□□ 1.49
SDCBP-204ENST00000447182 POGZQ7Z3K3 1410 aa24.38■■□□□ 1.49
SDCBP-204ENST00000447182 RTN4Q9NQC3 1192 aaKnown RBP24.38■■□□□ 1.49
SDCBP-204ENST00000447182 TNNQ9UQP3 1299 aa24.38■■□□□ 1.49
SDCBP-204ENST00000447182 ABCC3O15438 1527 aa24.37■■□□□ 1.49
SDCBP-204ENST00000447182 UPF2Q9HAU5 1272 aaKnown RBP24.37■■□□□ 1.49
SDCBP-204ENST00000447182 TBC1D32Q96NH3 1257 aa24.37■■□□□ 1.49
SDCBP-204ENST00000447182 MVPQ14764 893 aaKnown RBP24.36■■□□□ 1.49
SDCBP-204ENST00000447182 PIK3C2BO00750 1634 aa24.36■■□□□ 1.49
SDCBP-204ENST00000447182 CAMSAP1Q5T5Y3 1602 aa24.35■■□□□ 1.49
SDCBP-204ENST00000447182 BCL2L13Q9BXK5 485 aa24.35■■□□□ 1.49
SDCBP-204ENST00000447182 ZKSCAN2Q63HK3 967 aa24.33■■□□□ 1.49
SDCBP-204ENST00000447182 NEXMIFQ5QGS0 1516 aa24.33■■□□□ 1.49
SDCBP-204ENST00000447182 U2AF1L5P0DN76 240 aaPredicted RBP24.32■■□□□ 1.48
SDCBP-204ENST00000447182 U2AF1Q01081 240 aaKnown RBP eCLIP24.32■■□□□ 1.48
SDCBP-204ENST00000447182 ANTXR1Q9H6X2 564 aa24.32■■□□□ 1.48
SDCBP-204ENST00000447182 VGFO15240 615 aaPredicted RBP24.31■■□□□ 1.48
SDCBP-204ENST00000447182 SIGLEC1Q9BZZ2 1709 aa24.31■■□□□ 1.48
SDCBP-204ENST00000447182 GGT6Q6P531 493 aa24.31■■□□□ 1.48
SDCBP-204ENST00000447182 ABCC11Q96J66 1382 aa24.3■■□□□ 1.48
SDCBP-204ENST00000447182 DZIP1LQ8IYY4 767 aaKnown RBP24.3■■□□□ 1.48
SDCBP-204ENST00000447182 PLEKHF1Q96S99 279 aa24.28■■□□□ 1.48
SDCBP-204ENST00000447182 COL3A1P02461 1466 aaPredicted RBP24.27■■□□□ 1.48
SDCBP-204ENST00000447182 FTSJ3Q8IY81 847 aaKnown RBP24.27■■□□□ 1.48
SDCBP-204ENST00000447182 ZFYVE9O95405 1425 aa24.27■■□□□ 1.48
SDCBP-204ENST00000447182 CD109Q6YHK3 1445 aa24.26■■□□□ 1.47
SDCBP-204ENST00000447182 TBC1D2Q9BYX2 928 aa24.26■■□□□ 1.47
SDCBP-204ENST00000447182 HDAC1Q13547 482 aaPredicted RBP24.25■■□□□ 1.47
SDCBP-204ENST00000447182 SLKQ9H2G2 1235 aaPredicted RBP24.25■■□□□ 1.47
SDCBP-204ENST00000447182 IL16Q14005 1332 aa24.25■■□□□ 1.47
SDCBP-204ENST00000447182 MED14O60244 1454 aa24.25■■□□□ 1.47
SDCBP-204ENST00000447182 A0A1W2PP64 1363 aa24.25■■□□□ 1.47
SDCBP-204ENST00000447182 CABP2Q9NPB3 220 aa24.25■■□□□ 1.47
SDCBP-204ENST00000447182 ANKRD26Q9UPS8 1709 aa24.24■■□□□ 1.47
SDCBP-204ENST00000447182 ANO8Q9HCE9 1232 aaPredicted RBP24.24■■□□□ 1.47
SDCBP-204ENST00000447182 TMPOP42166 694 aaKnown RBP24.23■■□□□ 1.47
SDCBP-204ENST00000447182 ARHGAP31Q2M1Z3 1444 aa24.23■■□□□ 1.47
SDCBP-204ENST00000447182 TSR2Q969E8 191 aaKnown RBP24.22■■□□□ 1.47
SDCBP-204ENST00000447182 SMC4Q9NTJ3 1288 aa24.22■■□□□ 1.47
SDCBP-204ENST00000447182 DDX19BQ9UMR2 479 aa24.22■■□□□ 1.47
SDCBP-204ENST00000447182 TRIM35Q9UPQ4 493 aa24.22■■□□□ 1.47
SDCBP-204ENST00000447182 TRIM27P14373 513 aa24.22■■□□□ 1.47
SDCBP-204ENST00000447182 EXOSC9Q06265 439 aaKnown RBP24.22■■□□□ 1.47
SDCBP-204ENST00000447182 POGKQ9P215 609 aa24.22■■□□□ 1.47
SDCBP-204ENST00000447182 ATF7IPQ6VMQ6 1270 aa24.2■■□□□ 1.46
SDCBP-204ENST00000447182 SSH1Q8WYL5 1049 aa24.19■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms