RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 NUTM2EB1AL46 878 aaPredicted RBP30.55■■■□□ 2.48
SDC1-205ENST00000447124 NUTM2AQ8IVF1 878 aaPredicted RBP30.55■■■□□ 2.48
SDC1-205ENST00000447124 NRXN1Q9ULB1 1477 aa30.55■■■□□ 2.48
SDC1-205ENST00000447124 SHPRHQ149N8 1683 aa30.54■■■□□ 2.48
SDC1-205ENST00000447124 YTHDC2Q9H6S0 1430 aaKnown RBP30.54■■■□□ 2.48
SDC1-205ENST00000447124 MEX3CQ5U5Q3 659 aaKnown RBP30.53■■■□□ 2.48
SDC1-205ENST00000447124 SIRT1Q96EB6 747 aa30.52■■■□□ 2.48
SDC1-205ENST00000447124 MYOM2P54296 1465 aa30.5■■■□□ 2.47
SDC1-205ENST00000447124 SOS2Q07890 1332 aaPredicted RBP30.5■■■□□ 2.47
SDC1-205ENST00000447124 PNPLA6Q8IY17 1366 aa30.49■■■□□ 2.47
SDC1-205ENST00000447124 NUTM2FA1L443 756 aa30.48■■■□□ 2.47
SDC1-205ENST00000447124 ESCO1Q5FWF5 840 aa30.48■■■□□ 2.47
SDC1-205ENST00000447124 KDM2AQ9Y2K7 1162 aa30.47■■■□□ 2.47
SDC1-205ENST00000447124 DHX57Q6P158 1386 aaKnown RBP30.46■■■□□ 2.47
SDC1-205ENST00000447124 DCAF11Q8TEB1 546 aa30.45■■■□□ 2.47
SDC1-205ENST00000447124 CDC42BPGQ6DT37 1551 aa30.44■■■□□ 2.46
SDC1-205ENST00000447124 ZNF772Q68DY9 489 aaPredicted RBP30.43■■■□□ 2.46
SDC1-205ENST00000447124 LAMC1P11047 1609 aa30.43■■■□□ 2.46
SDC1-205ENST00000447124 KNDC1Q76NI1 1749 aa30.42■■■□□ 2.46
SDC1-205ENST00000447124 FOXO3O43524 673 aa30.41■■■□□ 2.46
SDC1-205ENST00000447124 PRAM1Q96QH2 718 aa30.39■■■□□ 2.46
SDC1-205ENST00000447124 SAFB2Q14151 953 aaKnown RBP eCLIP30.38■■■□□ 2.45
SDC1-205ENST00000447124 XPCQ01831 940 aaPredicted RBP30.37■■■□□ 2.45
SDC1-205ENST00000447124 AFF2P51816 1311 aa30.37■■■□□ 2.45
SDC1-205ENST00000447124 NPHP3Q7Z494 1330 aa30.37■■■□□ 2.45
SDC1-205ENST00000447124 STAC3Q96MF2 364 aa30.35■■■□□ 2.45
SDC1-205ENST00000447124 C8orf37Q96NL8 207 aa30.35■■■□□ 2.45
SDC1-205ENST00000447124 ADAMTS2O95450 1211 aa30.34■■■□□ 2.45
SDC1-205ENST00000447124 TRAK1Q9UPV9 953 aa30.34■■■□□ 2.45
SDC1-205ENST00000447124 ADGRB1O14514 1584 aa30.33■■■□□ 2.45
SDC1-205ENST00000447124 POGKQ9P215 609 aa30.32■■■□□ 2.44
SDC1-205ENST00000447124 PXDNQ92626 1479 aa30.31■■■□□ 2.44
SDC1-205ENST00000447124 RXRBP28702 533 aa30.29■■■□□ 2.44
SDC1-205ENST00000447124 DLC1Q96QB1 1528 aa30.28■■■□□ 2.44
SDC1-205ENST00000447124 FMN2Q9NZ56 1722 aa30.28■■■□□ 2.44
SDC1-205ENST00000447124 NGLY1Q96IV0 654 aa30.27■■■□□ 2.44
SDC1-205ENST00000447124 KRT28Q7Z3Y7 464 aa30.25■■■□□ 2.43
SDC1-205ENST00000447124 QTRT2Q9H974 415 aaKnown RBP30.25■■■□□ 2.43
SDC1-205ENST00000447124 PHF8Q9UPP1 1060 aa30.25■■■□□ 2.43
SDC1-205ENST00000447124 HIRIP3Q9BW71 556 aaPredicted RBP30.23■■■□□ 2.43
SDC1-205ENST00000447124 SPATA31A3Q5VYP0 1347 aa30.21■■■□□ 2.43
SDC1-205ENST00000447124 MINK1Q8N4C8 1332 aaPredicted RBP30.21■■■□□ 2.43
SDC1-205ENST00000447124 RGPD8O14715 1765 aaPredicted RBP30.2■■■□□ 2.42
SDC1-205ENST00000447124 COL22A1Q8NFW1 1626 aaPredicted RBP30.19■■■□□ 2.42
SDC1-205ENST00000447124 FNBP4Q8N3X1 1017 aaPredicted RBP30.19■■■□□ 2.42
SDC1-205ENST00000447124 RBM6P78332 1123 aaKnown RBP30.17■■■□□ 2.42
SDC1-205ENST00000447124 PMFBP1Q8TBY8 1022 aa30.17■■■□□ 2.42
SDC1-205ENST00000447124 USP21Q9UK80 565 aa30.16■■■□□ 2.42
SDC1-205ENST00000447124 PRR36Q9H6K5 1346 aa30.15■■■□□ 2.42
SDC1-205ENST00000447124 WASLO00401 505 aaPredicted RBP30.14■■■□□ 2.42
SDC1-205ENST00000447124 NBPF1Q3BBV0 1214 aa30.14■■■□□ 2.42
SDC1-205ENST00000447124 KIF1AQ12756 1690 aa30.14■■■□□ 2.41
SDC1-205ENST00000447124 PSME1Q06323 249 aa30.13■■■□□ 2.41
SDC1-205ENST00000447124 ANKARQ7Z5J8 1434 aa30.13■■■□□ 2.41
SDC1-205ENST00000447124 CDK12Q9NYV4 1490 aaPredicted RBP30.12■■■□□ 2.41
SDC1-205ENST00000447124 USP32Q8NFA0 1604 aa30.11■■■□□ 2.41
SDC1-205ENST00000447124 ADGRB2O60241 1585 aa30.11■■■□□ 2.41
SDC1-205ENST00000447124 UPF1Q92900 1129 aaKnown RBP eCLIP30.1■■■□□ 2.41
SDC1-205ENST00000447124 SIN3AQ96ST3 1273 aa30.1■■■□□ 2.41
SDC1-205ENST00000447124 TRPC5Q9UL62 973 aaPredicted RBP30.09■■■□□ 2.41
SDC1-205ENST00000447124 SBNO1A3KN83 1393 aa30.08■■■□□ 2.41
SDC1-205ENST00000447124 CABLES1Q8TDN4 633 aa30.08■■■□□ 2.41
SDC1-205ENST00000447124 L3MBTL2Q969R5 705 aa30.06■■■□□ 2.4
SDC1-205ENST00000447124 BCL9LQ86UU0 1499 aa30.06■■■□□ 2.4
SDC1-205ENST00000447124 RGS12O14924 1447 aa30.05■■■□□ 2.4
SDC1-205ENST00000447124 TNS3Q68CZ2 1445 aa30.05■■■□□ 2.4
SDC1-205ENST00000447124 PLEKHG5O94827 1062 aa30.04■■■□□ 2.4
SDC1-205ENST00000447124 LMOD2Q6P5Q4 547 aa30.04■■■□□ 2.4
SDC1-205ENST00000447124 ATRNO75882 1429 aa30.04■■■□□ 2.4
SDC1-205ENST00000447124 ARHGEF28Q8N1W1 1705 aaKnown RBP30.02■■■□□ 2.4
SDC1-205ENST00000447124 EIF3AQ14152 1382 aaKnown RBP30.02■■■□□ 2.4
SDC1-205ENST00000447124 TULP4Q9NRJ4 1543 aa30.01■■■□□ 2.4
SDC1-205ENST00000447124 NUDT16Q96DE0 195 aaKnown RBP30.01■■■□□ 2.39
SDC1-205ENST00000447124 CDK19Q9BWU1 502 aa30.01■■■□□ 2.39
SDC1-205ENST00000447124 NEUROD1Q13562 356 aa29.99■■■□□ 2.39
SDC1-205ENST00000447124 KIAA1210Q9ULL0 1709 aa29.98■■■□□ 2.39
SDC1-205ENST00000447124 MARF1Q9Y4F3 1742 aaKnown RBP29.97■■■□□ 2.39
SDC1-205ENST00000447124 UNC5CLQ8IV45 518 aa29.97■■■□□ 2.39
SDC1-205ENST00000447124 NGDNQ8NEJ9 315 aaKnown RBP29.97■■■□□ 2.39
SDC1-205ENST00000447124 ARHGEF10O15013 1369 aa29.97■■■□□ 2.39
SDC1-205ENST00000447124 GPRASP1Q5JY77 1395 aa29.96■■■□□ 2.39
SDC1-205ENST00000447124 GJD4Q96KN9 370 aaPredicted RBP29.96■■■□□ 2.39
SDC1-205ENST00000447124 SLIT2O94813 1529 aa29.96■■■□□ 2.39
SDC1-205ENST00000447124 HAP1P54257 671 aaPredicted RBP29.95■■■□□ 2.39
SDC1-205ENST00000447124 FAM83GA6ND36 823 aa29.93■■■□□ 2.38
SDC1-205ENST00000447124 ATP7BP35670 1465 aa29.93■■■□□ 2.38
SDC1-205ENST00000447124 TRPM3Q9HCF6 1732 aaPredicted RBP29.91■■■□□ 2.38
SDC1-205ENST00000447124 CCDC61Q9Y6R9 512 aa29.89■■■□□ 2.38
SDC1-205ENST00000447124 PAK3O75914 559 aaPredicted RBP29.88■■■□□ 2.37
SDC1-205ENST00000447124 CENPJQ9HC77 1338 aaPredicted RBP29.88■■■□□ 2.37
SDC1-205ENST00000447124 PLEKHG3A1L390 1219 aa29.87■■■□□ 2.37
SDC1-205ENST00000447124 NBPF8Q3BBV2 869 aa29.86■■■□□ 2.37
SDC1-205ENST00000447124 ACEP12821 1306 aa29.85■■■□□ 2.37
SDC1-205ENST00000447124 ALS2Q96Q42 1657 aa29.84■■■□□ 2.37
SDC1-205ENST00000447124 RALGAPBQ86X10 1494 aa29.83■■■□□ 2.37
SDC1-205ENST00000447124 VPS72Q15906 364 aa29.83■■■□□ 2.37
SDC1-205ENST00000447124 CABP2Q9NPB3 220 aa29.83■■■□□ 2.37
SDC1-205ENST00000447124 POLR3AO14802 1390 aaPredicted RBP29.82■■■□□ 2.36
SDC1-205ENST00000447124 ABCA3Q99758 1704 aa29.81■■■□□ 2.36
SDC1-205ENST00000447124 TNKS1BP1Q9C0C2 1729 aaKnown RBP29.81■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms