RNA–Protein interactions for RNA: ENST00000446625.6

LIMCH1-204, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 5

Gene LIMCH1, Length 789 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-204ENST00000446625 LRP5O75197 1615 aa12.02□□□□□ -0.49
LIMCH1-204ENST00000446625 ROBO2Q9HCK4 1378 aa12.02□□□□□ -0.49
LIMCH1-204ENST00000446625 BLMP54132 1417 aaPredicted RBP12.02□□□□□ -0.49
LIMCH1-204ENST00000446625 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.01□□□□□ -0.49
LIMCH1-204ENST00000446625 GLI3P10071 1580 aa12.01□□□□□ -0.49
LIMCH1-204ENST00000446625 XPCQ01831 940 aaPredicted RBP11.99□□□□□ -0.49
LIMCH1-204ENST00000446625 ROCK1Q13464 1354 aa11.99□□□□□ -0.49
LIMCH1-204ENST00000446625 RALGAPBQ86X10 1494 aa11.99□□□□□ -0.49
LIMCH1-204ENST00000446625 PXDNQ92626 1479 aa11.99□□□□□ -0.49
LIMCH1-204ENST00000446625 CLTCL1P53675 1640 aa11.99□□□□□ -0.49
LIMCH1-204ENST00000446625 KIF1BO60333 1816 aa11.99□□□□□ -0.49
LIMCH1-204ENST00000446625 NPHP3Q7Z494 1330 aa11.98□□□□□ -0.49
LIMCH1-204ENST00000446625 ESCO1Q5FWF5 840 aa11.98□□□□□ -0.49
LIMCH1-204ENST00000446625 UNC5CLQ8IV45 518 aa11.98□□□□□ -0.49
LIMCH1-204ENST00000446625 FOXO3O43524 673 aa11.97□□□□□ -0.49
LIMCH1-204ENST00000446625 SLIT2O94813 1529 aa11.96□□□□□ -0.49
LIMCH1-204ENST00000446625 PSDA5PKW4 1024 aaPredicted RBP11.96□□□□□ -0.49
LIMCH1-204ENST00000446625 SF3B2Q13435 895 aaKnown RBP11.96□□□□□ -0.49
LIMCH1-204ENST00000446625 PRAG1Q86YV5 1406 aa11.95□□□□□ -0.5
LIMCH1-204ENST00000446625 SEPT12Q8IYM1 358 aa11.95□□□□□ -0.5
LIMCH1-204ENST00000446625 HFM1A2PYH4 1435 aa11.94□□□□□ -0.5
LIMCH1-204ENST00000446625 CDC42BPGQ6DT37 1551 aa11.94□□□□□ -0.5
LIMCH1-204ENST00000446625 HRCP23327 699 aa11.93□□□□□ -0.5
LIMCH1-204ENST00000446625 NUTM2FA1L443 756 aa11.92□□□□□ -0.5
LIMCH1-204ENST00000446625 VGFO15240 615 aaPredicted RBP11.92□□□□□ -0.5
LIMCH1-204ENST00000446625 ITGAEP38570 1179 aa11.92□□□□□ -0.5
LIMCH1-204ENST00000446625 USP32Q8NFA0 1604 aa11.92□□□□□ -0.5
LIMCH1-204ENST00000446625 LRPPRCP42704 1394 aaKnown RBP11.92□□□□□ -0.5
LIMCH1-204ENST00000446625 VPS72Q15906 364 aa11.91□□□□□ -0.5
LIMCH1-204ENST00000446625 KRT27Q7Z3Y8 459 aa11.91□□□□□ -0.5
LIMCH1-204ENST00000446625 SPATA31A3Q5VYP0 1347 aa11.9□□□□□ -0.5
LIMCH1-204ENST00000446625 PPLO60437 1756 aa11.9□□□□□ -0.5
LIMCH1-204ENST00000446625 ONECUT3O60422 494 aaPredicted RBP11.9□□□□□ -0.5
LIMCH1-204ENST00000446625 NAIPQ13075 1403 aa11.9□□□□□ -0.5
LIMCH1-204ENST00000446625 PLCH1Q4KWH8 1693 aa11.9□□□□□ -0.5
LIMCH1-204ENST00000446625 NWD2Q9ULI1 1742 aa11.89□□□□□ -0.51
LIMCH1-204ENST00000446625 BAG6P46379 1132 aa11.89□□□□□ -0.51
LIMCH1-204ENST00000446625 CCDC9Q9Y3X0 531 aaKnown RBP11.89□□□□□ -0.51
LIMCH1-204ENST00000446625 RGPD8O14715 1765 aaPredicted RBP11.88□□□□□ -0.51
LIMCH1-204ENST00000446625 WAPLQ7Z5K2 1190 aa11.88□□□□□ -0.51
LIMCH1-204ENST00000446625 CABLES1Q8TDN4 633 aa11.88□□□□□ -0.51
LIMCH1-204ENST00000446625 FMN2Q9NZ56 1722 aa11.87□□□□□ -0.51
LIMCH1-204ENST00000446625 PLEKHG5O94827 1062 aa11.87□□□□□ -0.51
LIMCH1-204ENST00000446625 HAP1P54257 671 aaPredicted RBP11.87□□□□□ -0.51
LIMCH1-204ENST00000446625 KRT28Q7Z3Y7 464 aa11.87□□□□□ -0.51
LIMCH1-204ENST00000446625 KIF1AQ12756 1690 aa11.87□□□□□ -0.51
LIMCH1-204ENST00000446625 RPGRIP1LQ68CZ1 1315 aa11.86□□□□□ -0.51
LIMCH1-204ENST00000446625 EN1Q05925 392 aaPredicted RBP11.86□□□□□ -0.51
LIMCH1-204ENST00000446625 R3HDM1Q15032 1099 aaKnown RBP11.86□□□□□ -0.51
LIMCH1-204ENST00000446625 STK26Q9P289 416 aa11.86□□□□□ -0.51
LIMCH1-204ENST00000446625 RGPD1P0DJD0 1748 aa11.86□□□□□ -0.51
LIMCH1-204ENST00000446625 ABCA3Q99758 1704 aa11.86□□□□□ -0.51
LIMCH1-204ENST00000446625 CCDC144AA2RUR9 1427 aa11.86□□□□□ -0.51
LIMCH1-204ENST00000446625 A0A0G2JS52 829 aa11.85□□□□□ -0.51
LIMCH1-204ENST00000446625 MYT1Q01538 1121 aa11.85□□□□□ -0.51
LIMCH1-204ENST00000446625 PLEKHH1Q9ULM0 1364 aa11.84□□□□□ -0.51
LIMCH1-204ENST00000446625 TECPR2O15040 1411 aa11.84□□□□□ -0.51
LIMCH1-204ENST00000446625 TNS3Q68CZ2 1445 aa11.84□□□□□ -0.51
LIMCH1-204ENST00000446625 FAM83GA6ND36 823 aa11.83□□□□□ -0.52
LIMCH1-204ENST00000446625 FAM98CQ17RN3 349 aaKnown RBP11.83□□□□□ -0.52
LIMCH1-204ENST00000446625 FAM182BQ5T319 152 aa11.83□□□□□ -0.52
LIMCH1-204ENST00000446625 NRAPQ86VF7 1730 aa11.83□□□□□ -0.52
LIMCH1-204ENST00000446625 KNDC1Q76NI1 1749 aa11.82□□□□□ -0.52
LIMCH1-204ENST00000446625 TNS1Q9HBL0 1735 aaKnown RBP11.82□□□□□ -0.52
LIMCH1-204ENST00000446625 IFT172Q9UG01 1749 aa11.82□□□□□ -0.52
LIMCH1-204ENST00000446625 ADGRF5Q8IZF2 1346 aa11.82□□□□□ -0.52
LIMCH1-204ENST00000446625 YY1P25490 414 aa11.81□□□□□ -0.52
LIMCH1-204ENST00000446625 PSME1Q06323 249 aa11.81□□□□□ -0.52
LIMCH1-204ENST00000446625 TMEM132EQ6IEE7 984 aa11.81□□□□□ -0.52
LIMCH1-204ENST00000446625 LMOD2Q6P5Q4 547 aa11.81□□□□□ -0.52
LIMCH1-204ENST00000446625 PHF8Q9UPP1 1060 aa11.81□□□□□ -0.52
LIMCH1-204ENST00000446625 ABCC11Q96J66 1382 aa11.8□□□□□ -0.52
LIMCH1-204ENST00000446625 EZH2Q15910 746 aaKnown RBP11.8□□□□□ -0.52
LIMCH1-204ENST00000446625 SBNO1A3KN83 1393 aa11.79□□□□□ -0.52
LIMCH1-204ENST00000446625 DISP2A7MBM2 1401 aa11.79□□□□□ -0.52
LIMCH1-204ENST00000446625 BTG4Q9NY30 223 aa11.79□□□□□ -0.52
LIMCH1-204ENST00000446625 ARHGEF10O15013 1369 aa11.79□□□□□ -0.52
LIMCH1-204ENST00000446625 RRBP1Q9P2E9 1410 aaKnown RBP11.78□□□□□ -0.52
LIMCH1-204ENST00000446625 NRXN1Q9ULB1 1477 aa11.77□□□□□ -0.52
LIMCH1-204ENST00000446625 CAMKK2Q96RR4 588 aa11.77□□□□□ -0.53
LIMCH1-204ENST00000446625 THSD7AQ9UPZ6 1657 aa11.77□□□□□ -0.53
LIMCH1-204ENST00000446625 COL14A1Q05707 1796 aaKnown RBP11.77□□□□□ -0.53
LIMCH1-204ENST00000446625 YTHDC2Q9H6S0 1430 aaKnown RBP11.77□□□□□ -0.53
LIMCH1-204ENST00000446625 SPATA31A5Q5VU36 1347 aa11.76□□□□□ -0.53
LIMCH1-204ENST00000446625 SPATA31A7Q8IWB4 1347 aa11.76□□□□□ -0.53
LIMCH1-204ENST00000446625 TRIM37O94972 964 aa11.75□□□□□ -0.53
LIMCH1-204ENST00000446625 RGL3Q3MIN7 710 aa11.75□□□□□ -0.53
LIMCH1-204ENST00000446625 PPARGC1BQ86YN6 1023 aaKnown RBP11.75□□□□□ -0.53
LIMCH1-204ENST00000446625 SLC4A1APQ9BWU0 796 aaKnown RBP11.75□□□□□ -0.53
LIMCH1-204ENST00000446625 TRPM3Q9HCF6 1732 aaPredicted RBP11.74□□□□□ -0.53
LIMCH1-204ENST00000446625 PMFBP1Q8TBY8 1022 aa11.74□□□□□ -0.53
LIMCH1-204ENST00000446625 SIRT1Q96EB6 747 aa11.74□□□□□ -0.53
LIMCH1-204ENST00000446625 ADGRB2O60241 1585 aa11.74□□□□□ -0.53
LIMCH1-204ENST00000446625 ALS2Q96Q42 1657 aa11.74□□□□□ -0.53
LIMCH1-204ENST00000446625 PIK3C2GO75747 1445 aa11.73□□□□□ -0.53
LIMCH1-204ENST00000446625 SPATA31E1Q6ZUB1 1445 aa11.73□□□□□ -0.53
LIMCH1-204ENST00000446625 RREB1Q92766 1687 aa11.73□□□□□ -0.53
LIMCH1-204ENST00000446625 ANKRD30BQ9BXX2 1392 aa11.73□□□□□ -0.53
LIMCH1-204ENST00000446625 NUP188Q5SRE5 1749 aa11.72□□□□□ -0.53
LIMCH1-204ENST00000446625 APBA3O96018 575 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms