RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 NUTM2BA6NNL0 878 aaPredicted RBP24.65■■□□□ 1.54
LIME1-202ENST00000444951 NUTM2EB1AL46 878 aaPredicted RBP24.65■■□□□ 1.54
LIME1-202ENST00000444951 NUTM2AQ8IVF1 878 aaPredicted RBP24.65■■□□□ 1.54
LIME1-202ENST00000444951 TIMELESSQ9UNS1 1208 aa24.65■■□□□ 1.54
LIME1-202ENST00000444951 MYOM2P54296 1465 aa24.64■■□□□ 1.53
LIME1-202ENST00000444951 PNPLA6Q8IY17 1366 aa24.6■■□□□ 1.53
LIME1-202ENST00000444951 STAC3Q96MF2 364 aa24.6■■□□□ 1.53
LIME1-202ENST00000444951 ORAI2Q96SN7 254 aa24.59■■□□□ 1.53
LIME1-202ENST00000444951 LAMC1P11047 1609 aa24.59■■□□□ 1.53
LIME1-202ENST00000444951 NBPF8Q3BBV2 869 aa24.58■■□□□ 1.53
LIME1-202ENST00000444951 ZNF772Q68DY9 489 aaPredicted RBP24.57■■□□□ 1.52
LIME1-202ENST00000444951 LRRC59Q96AG4 307 aaKnown RBP24.57■■□□□ 1.52
LIME1-202ENST00000444951 NRXN1Q9ULB1 1477 aa24.57■■□□□ 1.52
LIME1-202ENST00000444951 PIK3C2GO75747 1445 aa24.56■■□□□ 1.52
LIME1-202ENST00000444951 CFAP70Q5T0N1 1121 aa24.55■■□□□ 1.52
LIME1-202ENST00000444951 AFF2P51816 1311 aa24.54■■□□□ 1.52
LIME1-202ENST00000444951 ZEB1P37275 1124 aaPredicted RBP24.53■■□□□ 1.52
LIME1-202ENST00000444951 CDC42BPGQ6DT37 1551 aa24.52■■□□□ 1.52
LIME1-202ENST00000444951 STK26Q9P289 416 aa24.51■■□□□ 1.51
LIME1-202ENST00000444951 SOS2Q07890 1332 aaPredicted RBP24.51■■□□□ 1.51
LIME1-202ENST00000444951 C14orf93Q9H972 538 aaKnown RBP24.5■■□□□ 1.51
LIME1-202ENST00000444951 TECPR2O15040 1411 aa24.5■■□□□ 1.51
LIME1-202ENST00000444951 TMEM132EQ6IEE7 984 aa24.49■■□□□ 1.51
LIME1-202ENST00000444951 WAPLQ7Z5K2 1190 aa24.49■■□□□ 1.51
LIME1-202ENST00000444951 C8orf37Q96NL8 207 aa24.49■■□□□ 1.51
LIME1-202ENST00000444951 LRPPRCP42704 1394 aaKnown RBP24.49■■□□□ 1.51
LIME1-202ENST00000444951 PLEKHH1Q9ULM0 1364 aa24.49■■□□□ 1.51
LIME1-202ENST00000444951 KNDC1Q76NI1 1749 aa24.49■■□□□ 1.51
LIME1-202ENST00000444951 NBPF1Q3BBV0 1214 aa24.48■■□□□ 1.51
LIME1-202ENST00000444951 TRPM1Q7Z4N2 1603 aa24.47■■□□□ 1.51
LIME1-202ENST00000444951 RXRBP28702 533 aa24.47■■□□□ 1.51
LIME1-202ENST00000444951 ROCK2O75116 1388 aaKnown RBP24.45■■□□□ 1.5
LIME1-202ENST00000444951 ADAMTS2O95450 1211 aa24.45■■□□□ 1.5
LIME1-202ENST00000444951 ABCC11Q96J66 1382 aa24.44■■□□□ 1.5
LIME1-202ENST00000444951 NUTM2FA1L443 756 aa24.43■■□□□ 1.5
LIME1-202ENST00000444951 ESCO1Q5FWF5 840 aa24.43■■□□□ 1.5
LIME1-202ENST00000444951 KIAA1210Q9ULL0 1709 aa24.43■■□□□ 1.5
LIME1-202ENST00000444951 PXDNQ92626 1479 aa24.43■■□□□ 1.5
LIME1-202ENST00000444951 CDK12Q9NYV4 1490 aaPredicted RBP24.43■■□□□ 1.5
LIME1-202ENST00000444951 YTHDC2Q9H6S0 1430 aaKnown RBP24.43■■□□□ 1.5
LIME1-202ENST00000444951 COL22A1Q8NFW1 1626 aaPredicted RBP24.43■■□□□ 1.5
LIME1-202ENST00000444951 UPF1Q92900 1129 aaKnown RBP eCLIP24.42■■□□□ 1.5
LIME1-202ENST00000444951 RALGAPBQ86X10 1494 aa24.42■■□□□ 1.5
LIME1-202ENST00000444951 RGS12O14924 1447 aa24.41■■□□□ 1.5
LIME1-202ENST00000444951 FMN2Q9NZ56 1722 aa24.41■■□□□ 1.5
LIME1-202ENST00000444951 XPCQ01831 940 aaPredicted RBP24.4■■□□□ 1.5
LIME1-202ENST00000444951 CARD11Q9BXL7 1154 aa24.39■■□□□ 1.49
LIME1-202ENST00000444951 QTRT2Q9H974 415 aaKnown RBP24.39■■□□□ 1.49
LIME1-202ENST00000444951 NGLY1Q96IV0 654 aa24.38■■□□□ 1.49
LIME1-202ENST00000444951 ADGRB1O14514 1584 aa24.37■■□□□ 1.49
LIME1-202ENST00000444951 NPHP3Q7Z494 1330 aa24.37■■□□□ 1.49
LIME1-202ENST00000444951 FOXO3O43524 673 aa24.37■■□□□ 1.49
LIME1-202ENST00000444951 TRAK1Q9UPV9 953 aa24.37■■□□□ 1.49
LIME1-202ENST00000444951 RBM6P78332 1123 aaKnown RBP24.34■■□□□ 1.49
LIME1-202ENST00000444951 RGPD8O14715 1765 aaPredicted RBP24.34■■□□□ 1.49
LIME1-202ENST00000444951 GPRASP1Q5JY77 1395 aa24.31■■□□□ 1.48
LIME1-202ENST00000444951 USP21Q9UK80 565 aa24.31■■□□□ 1.48
LIME1-202ENST00000444951 MARF1Q9Y4F3 1742 aaKnown RBP24.3■■□□□ 1.48
LIME1-202ENST00000444951 FNBP4Q8N3X1 1017 aaPredicted RBP24.3■■□□□ 1.48
LIME1-202ENST00000444951 KIF1AQ12756 1690 aa24.3■■□□□ 1.48
LIME1-202ENST00000444951 SIRT1Q96EB6 747 aa24.29■■□□□ 1.48
LIME1-202ENST00000444951 ATRNO75882 1429 aa24.28■■□□□ 1.48
LIME1-202ENST00000444951 SAFB2Q14151 953 aaKnown RBP eCLIP24.28■■□□□ 1.48
LIME1-202ENST00000444951 PRAM1Q96QH2 718 aa24.26■■□□□ 1.47
LIME1-202ENST00000444951 POGKQ9P215 609 aa24.26■■□□□ 1.47
LIME1-202ENST00000444951 TRPC5Q9UL62 973 aaPredicted RBP24.25■■□□□ 1.47
LIME1-202ENST00000444951 USP47Q96K76 1375 aa24.25■■□□□ 1.47
LIME1-202ENST00000444951 BCL9LQ86UU0 1499 aa24.25■■□□□ 1.47
LIME1-202ENST00000444951 DLC1Q96QB1 1528 aa24.25■■□□□ 1.47
LIME1-202ENST00000444951 SPATA31A3Q5VYP0 1347 aa24.24■■□□□ 1.47
LIME1-202ENST00000444951 USP32Q8NFA0 1604 aa24.24■■□□□ 1.47
LIME1-202ENST00000444951 ARHGEF28Q8N1W1 1705 aaKnown RBP24.24■■□□□ 1.47
LIME1-202ENST00000444951 EIF3AQ14152 1382 aaKnown RBP24.22■■□□□ 1.47
LIME1-202ENST00000444951 KRT28Q7Z3Y7 464 aa24.22■■□□□ 1.47
LIME1-202ENST00000444951 HIRIP3Q9BW71 556 aaPredicted RBP24.22■■□□□ 1.47
LIME1-202ENST00000444951 EIF4G2P78344 907 aaKnown RBP eCLIP24.21■■□□□ 1.47
LIME1-202ENST00000444951 PHF8Q9UPP1 1060 aa24.21■■□□□ 1.47
LIME1-202ENST00000444951 HSPA5P11021 654 aaKnown RBP24.2■■□□□ 1.46
LIME1-202ENST00000444951 ADGRB2O60241 1585 aa24.2■■□□□ 1.46
LIME1-202ENST00000444951 EP400Q96L91 3159 aa24.19■■□□□ 1.46
LIME1-202ENST00000444951 CENPJQ9HC77 1338 aaPredicted RBP24.19■■□□□ 1.46
LIME1-202ENST00000444951 ST20-MTHFSA0A0A6YYL1 179 aa24.19■■□□□ 1.46
LIME1-202ENST00000444951 TNS3Q68CZ2 1445 aa24.18■■□□□ 1.46
LIME1-202ENST00000444951 MINK1Q8N4C8 1332 aaPredicted RBP24.17■■□□□ 1.46
LIME1-202ENST00000444951 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.17■■□□□ 1.46
LIME1-202ENST00000444951 SLIT2O94813 1529 aa24.16■■□□□ 1.46
LIME1-202ENST00000444951 ABCA3Q99758 1704 aa24.16■■□□□ 1.46
LIME1-202ENST00000444951 QRICH2Q9H0J4 1663 aa24.15■■□□□ 1.46
LIME1-202ENST00000444951 CABLES1Q8TDN4 633 aa24.15■■□□□ 1.46
LIME1-202ENST00000444951 PLEKHG5O94827 1062 aa24.14■■□□□ 1.45
LIME1-202ENST00000444951 GLI3P10071 1580 aa24.14■■□□□ 1.45
LIME1-202ENST00000444951 ANKARQ7Z5J8 1434 aa24.14■■□□□ 1.45
LIME1-202ENST00000444951 PMFBP1Q8TBY8 1022 aa24.14■■□□□ 1.45
LIME1-202ENST00000444951 ATAD2Q6PL18 1390 aa24.13■■□□□ 1.45
LIME1-202ENST00000444951 PRR36Q9H6K5 1346 aa24.12■■□□□ 1.45
LIME1-202ENST00000444951 GJD4Q96KN9 370 aaPredicted RBP24.12■■□□□ 1.45
LIME1-202ENST00000444951 SBNO1A3KN83 1393 aa24.12■■□□□ 1.45
LIME1-202ENST00000444951 TRPM3Q9HCF6 1732 aaPredicted RBP24.11■■□□□ 1.45
LIME1-202ENST00000444951 PSME1Q06323 249 aa24.1■■□□□ 1.45
LIME1-202ENST00000444951 UNC5CLQ8IV45 518 aa24.1■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms