RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 SLC4A1APQ9BWU0 796 aaKnown RBP11.61□□□□□ -0.55
CD44-211ENST00000442151 AMOTL2Q9Y2J4 779 aa11.61□□□□□ -0.55
CD44-211ENST00000442151 MED1Q15648 1581 aaPredicted RBP11.61□□□□□ -0.55
CD44-211ENST00000442151 MKRN4PQ13434 485 aaPredicted RBP11.6□□□□□ -0.55
CD44-211ENST00000442151 TRPM2O94759 1503 aa11.6□□□□□ -0.55
CD44-211ENST00000442151 NUTM2DQ5VT03 806 aaPredicted RBP11.6□□□□□ -0.55
CD44-211ENST00000442151 CHD2O14647 1828 aaKnown RBP11.6□□□□□ -0.55
CD44-211ENST00000442151 NAIPQ13075 1403 aa11.6□□□□□ -0.55
CD44-211ENST00000442151 ALKQ9UM73 1620 aa11.59□□□□□ -0.55
CD44-211ENST00000442151 MYO5BQ9ULV0 1848 aa11.58□□□□□ -0.56
CD44-211ENST00000442151 HFM1A2PYH4 1435 aa11.58□□□□□ -0.56
CD44-211ENST00000442151 ADAMTS13Q76LX8 1427 aa11.58□□□□□ -0.56
CD44-211ENST00000442151 XIRP1Q702N8 1843 aaKnown RBP11.57□□□□□ -0.56
CD44-211ENST00000442151 SPHKAPQ2M3C7 1700 aa11.57□□□□□ -0.56
CD44-211ENST00000442151 RBM33Q96EV2 1170 aaKnown RBP11.57□□□□□ -0.56
CD44-211ENST00000442151 JCADQ9P266 1359 aa11.56□□□□□ -0.56
CD44-211ENST00000442151 LCE2DQ5TA82 110 aaPredicted RBP11.56□□□□□ -0.56
CD44-211ENST00000442151 DCCP43146 1447 aa11.54□□□□□ -0.56
CD44-211ENST00000442151 KIF1BO60333 1816 aa11.54□□□□□ -0.56
CD44-211ENST00000442151 SETBP1Q9Y6X0 1596 aa11.54□□□□□ -0.56
CD44-211ENST00000442151 SPATA31A6Q5VVP1 1343 aa11.54□□□□□ -0.56
CD44-211ENST00000442151 ROBO1Q9Y6N7 1651 aa11.53□□□□□ -0.56
CD44-211ENST00000442151 FAM163AQ96GL9 167 aaPredicted RBP11.52□□□□□ -0.57
CD44-211ENST00000442151 MEX3CQ5U5Q3 659 aaKnown RBP11.51□□□□□ -0.57
CD44-211ENST00000442151 LRRC59Q96AG4 307 aaKnown RBP11.51□□□□□ -0.57
CD44-211ENST00000442151 MPHOSPH9Q99550 1183 aa11.51□□□□□ -0.57
CD44-211ENST00000442151 ZNF772Q68DY9 489 aaPredicted RBP11.5□□□□□ -0.57
CD44-211ENST00000442151 PHLPP1O60346 1717 aa11.49□□□□□ -0.57
CD44-211ENST00000442151 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.49□□□□□ -0.57
CD44-211ENST00000442151 CCDC144AA2RUR9 1427 aa11.49□□□□□ -0.57
CD44-211ENST00000442151 PTPRUQ92729 1446 aa11.49□□□□□ -0.57
CD44-211ENST00000442151 ANKRD30BQ9BXX2 1392 aa11.49□□□□□ -0.57
CD44-211ENST00000442151 CLTCL1P53675 1640 aa11.48□□□□□ -0.57
CD44-211ENST00000442151 METP08581 1390 aa11.48□□□□□ -0.57
CD44-211ENST00000442151 BRINP3Q76B58 766 aa11.48□□□□□ -0.57
CD44-211ENST00000442151 NEXMIFQ5QGS0 1516 aa11.48□□□□□ -0.57
CD44-211ENST00000442151 METRNQ9UJH8 293 aa11.46□□□□□ -0.57
CD44-211ENST00000442151 ADGRL3Q9HAR2 1447 aa11.46□□□□□ -0.58
CD44-211ENST00000442151 PELP1Q8IZL8 1130 aaKnown RBP11.46□□□□□ -0.58
CD44-211ENST00000442151 SLC39A7Q92504 469 aa11.46□□□□□ -0.58
CD44-211ENST00000442151 RGS17Q9UGC6 210 aaPredicted RBP11.46□□□□□ -0.58
CD44-211ENST00000442151 AHDC1Q5TGY3 1603 aaPredicted RBP11.46□□□□□ -0.58
CD44-211ENST00000442151 SETD5Q9C0A6 1442 aa11.45□□□□□ -0.58
CD44-211ENST00000442151 C7P10643 843 aa11.45□□□□□ -0.58
CD44-211ENST00000442151 RGL3Q3MIN7 710 aa11.45□□□□□ -0.58
CD44-211ENST00000442151 STAC3Q96MF2 364 aa11.45□□□□□ -0.58
CD44-211ENST00000442151 XRN1Q8IZH2 1706 aaKnown RBP11.45□□□□□ -0.58
CD44-211ENST00000442151 PTCH1Q13635 1447 aa11.45□□□□□ -0.58
CD44-211ENST00000442151 SCUBE2Q9NQ36 999 aa11.44□□□□□ -0.58
CD44-211ENST00000442151 NRXN3Q9Y4C0 1643 aa11.44□□□□□ -0.58
CD44-211ENST00000442151 PAK3O75914 559 aaPredicted RBP11.44□□□□□ -0.58
CD44-211ENST00000442151 HRCP23327 699 aa11.44□□□□□ -0.58
CD44-211ENST00000442151 SIRT1Q96EB6 747 aa11.44□□□□□ -0.58
CD44-211ENST00000442151 LRPPRCP42704 1394 aaKnown RBP11.43□□□□□ -0.58
CD44-211ENST00000442151 MST1RQ04912 1400 aa11.43□□□□□ -0.58
CD44-211ENST00000442151 COL16A1Q07092 1604 aaPredicted RBP11.42□□□□□ -0.58
CD44-211ENST00000442151 POTEAQ6S8J7 498 aa11.42□□□□□ -0.58
CD44-211ENST00000442151 PRAG1Q86YV5 1406 aa11.42□□□□□ -0.58
CD44-211ENST00000442151 NUTM2BA6NNL0 878 aaPredicted RBP11.42□□□□□ -0.58
CD44-211ENST00000442151 NUTM2EB1AL46 878 aaPredicted RBP11.42□□□□□ -0.58
CD44-211ENST00000442151 POTEJP0CG39 1038 aa11.42□□□□□ -0.58
CD44-211ENST00000442151 NUTM2AQ8IVF1 878 aaPredicted RBP11.42□□□□□ -0.58
CD44-211ENST00000442151 RXRBP28702 533 aa11.41□□□□□ -0.58
CD44-211ENST00000442151 ASXL1Q8IXJ9 1541 aa11.41□□□□□ -0.58
CD44-211ENST00000442151 CDAN1Q8IWY9 1227 aa11.4□□□□□ -0.58
CD44-211ENST00000442151 ABCC11Q96J66 1382 aa11.4□□□□□ -0.58
CD44-211ENST00000442151 SHPRHQ149N8 1683 aa11.4□□□□□ -0.59
CD44-211ENST00000442151 C1orf167Q5SNV9 1468 aa11.4□□□□□ -0.59
CD44-211ENST00000442151 DHX57Q6P158 1386 aaKnown RBP11.4□□□□□ -0.59
CD44-211ENST00000442151 ROBO2Q9HCK4 1378 aa11.4□□□□□ -0.59
CD44-211ENST00000442151 NPHP3Q7Z494 1330 aa11.39□□□□□ -0.59
CD44-211ENST00000442151 PPLO60437 1756 aa11.39□□□□□ -0.59
CD44-211ENST00000442151 ADGRF5Q8IZF2 1346 aa11.39□□□□□ -0.59
CD44-211ENST00000442151 STK26Q9P289 416 aa11.39□□□□□ -0.59
CD44-211ENST00000442151 SPATA31E1Q6ZUB1 1445 aa11.38□□□□□ -0.59
CD44-211ENST00000442151 ESCO1Q5FWF5 840 aa11.38□□□□□ -0.59
CD44-211ENST00000442151 ASTLQ6HA08 431 aaPredicted RBP11.38□□□□□ -0.59
CD44-211ENST00000442151 C14orf93Q9H972 538 aaKnown RBP11.38□□□□□ -0.59
CD44-211ENST00000442151 SOS2Q07890 1332 aaPredicted RBP11.37□□□□□ -0.59
CD44-211ENST00000442151 NGLY1Q96IV0 654 aa11.37□□□□□ -0.59
CD44-211ENST00000442151 PSME1Q06323 249 aa11.36□□□□□ -0.59
CD44-211ENST00000442151 ORAI2Q96SN7 254 aa11.36□□□□□ -0.59
CD44-211ENST00000442151 TECPR2O15040 1411 aa11.36□□□□□ -0.59
CD44-211ENST00000442151 NHSL1Q5SYE7 1610 aa11.36□□□□□ -0.59
CD44-211ENST00000442151 AFF2P51816 1311 aa11.35□□□□□ -0.59
CD44-211ENST00000442151 PHF12Q96QT6 1004 aa11.35□□□□□ -0.59
CD44-211ENST00000442151 PNPLA6Q8IY17 1366 aa11.35□□□□□ -0.59
CD44-211ENST00000442151 RAB3GAP2Q9H2M9 1393 aa11.35□□□□□ -0.59
CD44-211ENST00000442151 RBM6P78332 1123 aaKnown RBP11.35□□□□□ -0.59
CD44-211ENST00000442151 QTRT2Q9H974 415 aaKnown RBP11.35□□□□□ -0.59
CD44-211ENST00000442151 POGKQ9P215 609 aa11.35□□□□□ -0.59
CD44-211ENST00000442151 NALCNQ8IZF0 1738 aa11.34□□□□□ -0.59
CD44-211ENST00000442151 TMEM132EQ6IEE7 984 aa11.34□□□□□ -0.59
CD44-211ENST00000442151 WAPLQ7Z5K2 1190 aa11.34□□□□□ -0.59
CD44-211ENST00000442151 C8orf37Q96NL8 207 aa11.34□□□□□ -0.59
CD44-211ENST00000442151 SETD1AO15047 1707 aaKnown RBP11.33□□□□□ -0.59
CD44-211ENST00000442151 PIK3C2GO75747 1445 aa11.33□□□□□ -0.6
CD44-211ENST00000442151 YTHDC2Q9H6S0 1430 aaKnown RBP11.33□□□□□ -0.6
CD44-211ENST00000442151 CDK12Q9NYV4 1490 aaPredicted RBP11.33□□□□□ -0.6
CD44-211ENST00000442151 LRP6O75581 1613 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms