RNA–Protein interactions for RNA: ENST00000440271.5

TRIM39-210, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 588 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-210ENST00000440271 NPHP3Q7Z494 1330 aa31.14■■■□□ 2.58
TRIM39-210ENST00000440271 RRBP1Q9P2E9 1410 aaKnown RBP31.14■■■□□ 2.58
TRIM39-210ENST00000440271 COL22A1Q8NFW1 1626 aaPredicted RBP31.13■■■□□ 2.57
TRIM39-210ENST00000440271 SLC4A1APQ9BWU0 796 aaKnown RBP31.13■■■□□ 2.57
TRIM39-210ENST00000440271 MYOM2P54296 1465 aa31.11■■■□□ 2.57
TRIM39-210ENST00000440271 FOXO3O43524 673 aa31.1■■■□□ 2.57
TRIM39-210ENST00000440271 PPLO60437 1756 aa31.08■■■□□ 2.57
TRIM39-210ENST00000440271 XPCQ01831 940 aaPredicted RBP31.08■■■□□ 2.57
TRIM39-210ENST00000440271 BCL9LQ86UU0 1499 aa31.08■■■□□ 2.57
TRIM39-210ENST00000440271 PXDNQ92626 1479 aa31.08■■■□□ 2.57
TRIM39-210ENST00000440271 SRCAPQ6ZRS2 3230 aa31.07■■■□□ 2.56
TRIM39-210ENST00000440271 CDC42BPGQ6DT37 1551 aa31.06■■■□□ 2.56
TRIM39-210ENST00000440271 FOXD1Q16676 465 aa31.06■■■□□ 2.56
TRIM39-210ENST00000440271 ZRANB1Q9UGI0 708 aa31.06■■■□□ 2.56
TRIM39-210ENST00000440271 CCDC125Q86Z20 511 aa31.04■■■□□ 2.56
TRIM39-210ENST00000440271 GJD4Q96KN9 370 aaPredicted RBP31.04■■■□□ 2.56
TRIM39-210ENST00000440271 ADGRF5Q8IZF2 1346 aa31.03■■■□□ 2.56
TRIM39-210ENST00000440271 WAPLQ7Z5K2 1190 aa31.03■■■□□ 2.56
TRIM39-210ENST00000440271 STK26Q9P289 416 aa31.03■■■□□ 2.56
TRIM39-210ENST00000440271 LRPPRCP42704 1394 aaKnown RBP31.03■■■□□ 2.56
TRIM39-210ENST00000440271 NUTM2FA1L443 756 aa31.02■■■□□ 2.56
TRIM39-210ENST00000440271 RGL3Q3MIN7 710 aa30.98■■■□□ 2.55
TRIM39-210ENST00000440271 TECPR2O15040 1411 aa30.97■■■□□ 2.55
TRIM39-210ENST00000440271 MARF1Q9Y4F3 1742 aaKnown RBP30.96■■■□□ 2.55
TRIM39-210ENST00000440271 EP400Q96L91 3159 aa30.95■■■□□ 2.55
TRIM39-210ENST00000440271 ABCC11Q96J66 1382 aa30.94■■■□□ 2.54
TRIM39-210ENST00000440271 TMEM132EQ6IEE7 984 aa30.94■■■□□ 2.54
TRIM39-210ENST00000440271 UNC5CLQ8IV45 518 aa30.94■■■□□ 2.54
TRIM39-210ENST00000440271 PLEKHH1Q9ULM0 1364 aa30.93■■■□□ 2.54
TRIM39-210ENST00000440271 SPATA31A3Q5VYP0 1347 aa30.93■■■□□ 2.54
TRIM39-210ENST00000440271 CCDC144AA2RUR9 1427 aa30.92■■■□□ 2.54
TRIM39-210ENST00000440271 ANKRD30BQ9BXX2 1392 aa30.92■■■□□ 2.54
TRIM39-210ENST00000440271 SPATA31E1Q6ZUB1 1445 aa30.9■■■□□ 2.54
TRIM39-210ENST00000440271 SLIT2O94813 1529 aa30.89■■■□□ 2.54
TRIM39-210ENST00000440271 KRT28Q7Z3Y7 464 aa30.89■■■□□ 2.54
TRIM39-210ENST00000440271 RALGAPBQ86X10 1494 aa30.88■■■□□ 2.53
TRIM39-210ENST00000440271 TNKS1BP1Q9C0C2 1729 aaKnown RBP30.87■■■□□ 2.53
TRIM39-210ENST00000440271 GLI3P10071 1580 aa30.85■■■□□ 2.53
TRIM39-210ENST00000440271 FMN2Q9NZ56 1722 aa30.84■■■□□ 2.53
TRIM39-210ENST00000440271 PIK3C2GO75747 1445 aa30.83■■■□□ 2.53
TRIM39-210ENST00000440271 BLMP54132 1417 aaPredicted RBP30.83■■■□□ 2.53
TRIM39-210ENST00000440271 YTHDC2Q9H6S0 1430 aaKnown RBP30.83■■■□□ 2.53
TRIM39-210ENST00000440271 SIRT1Q96EB6 747 aa30.83■■■□□ 2.53
TRIM39-210ENST00000440271 KNDC1Q76NI1 1749 aa30.82■■■□□ 2.52
TRIM39-210ENST00000440271 MPHOSPH9Q99550 1183 aa30.82■■■□□ 2.52
TRIM39-210ENST00000440271 KIF1AQ12756 1690 aa30.81■■■□□ 2.52
TRIM39-210ENST00000440271 IFT172Q9UG01 1749 aa30.81■■■□□ 2.52
TRIM39-210ENST00000440271 HAP1P54257 671 aaPredicted RBP30.8■■■□□ 2.52
TRIM39-210ENST00000440271 PSME1Q06323 249 aa30.8■■■□□ 2.52
TRIM39-210ENST00000440271 PHF8Q9UPP1 1060 aa30.8■■■□□ 2.52
TRIM39-210ENST00000440271 SEPT12Q8IYM1 358 aa30.79■■■□□ 2.52
TRIM39-210ENST00000440271 CABLES1Q8TDN4 633 aa30.79■■■□□ 2.52
TRIM39-210ENST00000440271 USP32Q8NFA0 1604 aa30.79■■■□□ 2.52
TRIM39-210ENST00000440271 VPS72Q15906 364 aa30.77■■■□□ 2.52
TRIM39-210ENST00000440271 DEFB132Q7Z7B7 95 aa30.77■■■□□ 2.52
TRIM39-210ENST00000440271 TNS3Q68CZ2 1445 aa30.76■■■□□ 2.51
TRIM39-210ENST00000440271 C14orf93Q9H972 538 aaKnown RBP30.76■■■□□ 2.51
TRIM39-210ENST00000440271 PLEKHG5O94827 1062 aa30.75■■■□□ 2.51
TRIM39-210ENST00000440271 ONECUT3O60422 494 aaPredicted RBP30.74■■■□□ 2.51
TRIM39-210ENST00000440271 SF3B2Q13435 895 aaKnown RBP30.74■■■□□ 2.51
TRIM39-210ENST00000440271 BRWD3Q6RI45 1802 aa30.73■■■□□ 2.51
TRIM39-210ENST00000440271 LMOD2Q6P5Q4 547 aa30.72■■■□□ 2.51
TRIM39-210ENST00000440271 CCDC9Q9Y3X0 531 aaKnown RBP30.72■■■□□ 2.51
TRIM39-210ENST00000440271 SBNO1A3KN83 1393 aa30.71■■■□□ 2.51
TRIM39-210ENST00000440271 CFAP70Q5T0N1 1121 aa30.71■■■□□ 2.51
TRIM39-210ENST00000440271 DHX57Q6P158 1386 aaKnown RBP30.7■■■□□ 2.51
TRIM39-210ENST00000440271 RGPD8O14715 1765 aaPredicted RBP30.7■■■□□ 2.51
TRIM39-210ENST00000440271 KRT27Q7Z3Y8 459 aa30.69■■■□□ 2.5
TRIM39-210ENST00000440271 SAFB2Q14151 953 aaKnown RBP eCLIP30.68■■■□□ 2.5
TRIM39-210ENST00000440271 PRAM1Q96QH2 718 aa30.68■■■□□ 2.5
TRIM39-210ENST00000440271 NRXN1Q9ULB1 1477 aa30.68■■■□□ 2.5
TRIM39-210ENST00000440271 FAM83GA6ND36 823 aa30.67■■■□□ 2.5
TRIM39-210ENST00000440271 ARHGEF10O15013 1369 aa30.66■■■□□ 2.5
TRIM39-210ENST00000440271 PMFBP1Q8TBY8 1022 aa30.64■■■□□ 2.5
TRIM39-210ENST00000440271 PLCH1Q4KWH8 1693 aa30.64■■■□□ 2.5
TRIM39-210ENST00000440271 NWD2Q9ULI1 1742 aa30.64■■■□□ 2.5
TRIM39-210ENST00000440271 POGKQ9P215 609 aa30.61■■■□□ 2.49
TRIM39-210ENST00000440271 A0A0G2JS52 829 aa30.59■■■□□ 2.49
TRIM39-210ENST00000440271 MYT1Q01538 1121 aa30.59■■■□□ 2.49
TRIM39-210ENST00000440271 ABCA3Q99758 1704 aa30.59■■■□□ 2.49
TRIM39-210ENST00000440271 ANKARQ7Z5J8 1434 aa30.58■■■□□ 2.49
TRIM39-210ENST00000440271 FAM98CQ17RN3 349 aaKnown RBP30.56■■■□□ 2.48
TRIM39-210ENST00000440271 BTG4Q9NY30 223 aa30.56■■■□□ 2.48
TRIM39-210ENST00000440271 BAG6P46379 1132 aa30.55■■■□□ 2.48
TRIM39-210ENST00000440271 DLC1Q96QB1 1528 aa30.54■■■□□ 2.48
TRIM39-210ENST00000440271 ACIN1Q9UKV3 1341 aaKnown RBP30.53■■■□□ 2.48
TRIM39-210ENST00000440271 PSDA5PKW4 1024 aaPredicted RBP30.52■■■□□ 2.48
TRIM39-210ENST00000440271 HIRIP3Q9BW71 556 aaPredicted RBP30.51■■■□□ 2.47
TRIM39-210ENST00000440271 GPRASP1Q5JY77 1395 aa30.51■■■□□ 2.47
TRIM39-210ENST00000440271 TRAK1Q9UPV9 953 aa30.5■■■□□ 2.47
TRIM39-210ENST00000440271 LRP5O75197 1615 aa30.49■■■□□ 2.47
TRIM39-210ENST00000440271 NRAPQ86VF7 1730 aa30.48■■■□□ 2.47
TRIM39-210ENST00000440271 ADGRB2O60241 1585 aa30.48■■■□□ 2.47
TRIM39-210ENST00000440271 PRR36Q9H6K5 1346 aa30.47■■■□□ 2.47
TRIM39-210ENST00000440271 TRPM3Q9HCF6 1732 aaPredicted RBP30.47■■■□□ 2.47
TRIM39-210ENST00000440271 HRCP23327 699 aa30.47■■■□□ 2.47
TRIM39-210ENST00000440271 MINK1Q8N4C8 1332 aaPredicted RBP30.47■■■□□ 2.47
TRIM39-210ENST00000440271 SPATA31A5Q5VU36 1347 aa30.46■■■□□ 2.47
TRIM39-210ENST00000440271 SPATA31A7Q8IWB4 1347 aa30.46■■■□□ 2.47
TRIM39-210ENST00000440271 ADGRB1O14514 1584 aa30.45■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms