RNA–Protein interactions for RNA: ENST00000439518.5

NCKIPSD-206, Transcript of NCK interacting protein with SH3 domain, humanhuman

TSL 1 (best)

Gene NCKIPSD, Length 1,214 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-206ENST00000439518 WAPLQ7Z5K2 1190 aa29.94■■■□□ 2.38
NCKIPSD-206ENST00000439518 CDC42BPGQ6DT37 1551 aa29.94■■■□□ 2.38
NCKIPSD-206ENST00000439518 YTHDC2Q9H6S0 1430 aaKnown RBP29.93■■■□□ 2.38
NCKIPSD-206ENST00000439518 KNDC1Q76NI1 1749 aa29.91■■■□□ 2.38
NCKIPSD-206ENST00000439518 MEX3CQ5U5Q3 659 aaKnown RBP29.91■■■□□ 2.38
NCKIPSD-206ENST00000439518 PLEKHH1Q9ULM0 1364 aa29.9■■■□□ 2.38
NCKIPSD-206ENST00000439518 CFAP70Q5T0N1 1121 aa29.89■■■□□ 2.38
NCKIPSD-206ENST00000439518 PNPLA6Q8IY17 1366 aa29.89■■■□□ 2.37
NCKIPSD-206ENST00000439518 NUTM2BA6NNL0 878 aaPredicted RBP29.88■■■□□ 2.37
NCKIPSD-206ENST00000439518 NUTM2EB1AL46 878 aaPredicted RBP29.88■■■□□ 2.37
NCKIPSD-206ENST00000439518 NUTM2AQ8IVF1 878 aaPredicted RBP29.88■■■□□ 2.37
NCKIPSD-206ENST00000439518 SIRT1Q96EB6 747 aa29.88■■■□□ 2.37
NCKIPSD-206ENST00000439518 SOS2Q07890 1332 aaPredicted RBP29.88■■■□□ 2.37
NCKIPSD-206ENST00000439518 ZNF772Q68DY9 489 aaPredicted RBP29.84■■■□□ 2.37
NCKIPSD-206ENST00000439518 DHX57Q6P158 1386 aaKnown RBP29.84■■■□□ 2.37
NCKIPSD-206ENST00000439518 ESCO1Q5FWF5 840 aa29.82■■■□□ 2.36
NCKIPSD-206ENST00000439518 NPHP3Q7Z494 1330 aa29.78■■■□□ 2.36
NCKIPSD-206ENST00000439518 NUTM2FA1L443 756 aa29.77■■■□□ 2.36
NCKIPSD-206ENST00000439518 DCAF11Q8TEB1 546 aa29.77■■■□□ 2.36
NCKIPSD-206ENST00000439518 STAC3Q96MF2 364 aa29.76■■■□□ 2.35
NCKIPSD-206ENST00000439518 AFF2P51816 1311 aa29.75■■■□□ 2.35
NCKIPSD-206ENST00000439518 PXDNQ92626 1479 aa29.75■■■□□ 2.35
NCKIPSD-206ENST00000439518 ADGRB1O14514 1584 aa29.75■■■□□ 2.35
NCKIPSD-206ENST00000439518 FOXO3O43524 673 aa29.75■■■□□ 2.35
NCKIPSD-206ENST00000439518 FMN2Q9NZ56 1722 aa29.75■■■□□ 2.35
NCKIPSD-206ENST00000439518 KDM2AQ9Y2K7 1162 aa29.75■■■□□ 2.35
NCKIPSD-206ENST00000439518 PRAM1Q96QH2 718 aa29.74■■■□□ 2.35
NCKIPSD-206ENST00000439518 DLC1Q96QB1 1528 aa29.73■■■□□ 2.35
NCKIPSD-206ENST00000439518 C8orf37Q96NL8 207 aa29.7■■■□□ 2.35
NCKIPSD-206ENST00000439518 COL22A1Q8NFW1 1626 aaPredicted RBP29.69■■■□□ 2.34
NCKIPSD-206ENST00000439518 ADAMTS2O95450 1211 aa29.68■■■□□ 2.34
NCKIPSD-206ENST00000439518 XPCQ01831 940 aaPredicted RBP29.68■■■□□ 2.34
NCKIPSD-206ENST00000439518 SAFB2Q14151 953 aaKnown RBP eCLIP29.68■■■□□ 2.34
NCKIPSD-206ENST00000439518 RXRBP28702 533 aa29.67■■■□□ 2.34
NCKIPSD-206ENST00000439518 POGKQ9P215 609 aa29.66■■■□□ 2.34
NCKIPSD-206ENST00000439518 TRAK1Q9UPV9 953 aa29.65■■■□□ 2.34
NCKIPSD-206ENST00000439518 KIF1AQ12756 1690 aa29.65■■■□□ 2.34
NCKIPSD-206ENST00000439518 NGLY1Q96IV0 654 aa29.64■■■□□ 2.34
NCKIPSD-206ENST00000439518 CDK12Q9NYV4 1490 aaPredicted RBP29.61■■■□□ 2.33
NCKIPSD-206ENST00000439518 QTRT2Q9H974 415 aaKnown RBP29.61■■■□□ 2.33
NCKIPSD-206ENST00000439518 PHF8Q9UPP1 1060 aa29.61■■■□□ 2.33
NCKIPSD-206ENST00000439518 ADGRB2O60241 1585 aa29.6■■■□□ 2.33
NCKIPSD-206ENST00000439518 RGPD8O14715 1765 aaPredicted RBP29.59■■■□□ 2.33
NCKIPSD-206ENST00000439518 KRT28Q7Z3Y7 464 aa29.59■■■□□ 2.33
NCKIPSD-206ENST00000439518 SPATA31A3Q5VYP0 1347 aa29.59■■■□□ 2.33
NCKIPSD-206ENST00000439518 ANKARQ7Z5J8 1434 aa29.58■■■□□ 2.33
NCKIPSD-206ENST00000439518 FNBP4Q8N3X1 1017 aaPredicted RBP29.58■■■□□ 2.33
NCKIPSD-206ENST00000439518 RBM6P78332 1123 aaKnown RBP29.56■■■□□ 2.32
NCKIPSD-206ENST00000439518 HIRIP3Q9BW71 556 aaPredicted RBP29.55■■■□□ 2.32
NCKIPSD-206ENST00000439518 USP32Q8NFA0 1604 aa29.55■■■□□ 2.32
NCKIPSD-206ENST00000439518 MINK1Q8N4C8 1332 aaPredicted RBP29.54■■■□□ 2.32
NCKIPSD-206ENST00000439518 USP21Q9UK80 565 aa29.54■■■□□ 2.32
NCKIPSD-206ENST00000439518 PSME1Q06323 249 aa29.51■■■□□ 2.31
NCKIPSD-206ENST00000439518 WASLO00401 505 aaPredicted RBP29.5■■■□□ 2.31
NCKIPSD-206ENST00000439518 SBNO1A3KN83 1393 aa29.5■■■□□ 2.31
NCKIPSD-206ENST00000439518 TNS3Q68CZ2 1445 aa29.49■■■□□ 2.31
NCKIPSD-206ENST00000439518 EIF3AQ14152 1382 aaKnown RBP29.49■■■□□ 2.31
NCKIPSD-206ENST00000439518 PRR36Q9H6K5 1346 aa29.48■■■□□ 2.31
NCKIPSD-206ENST00000439518 RGS12O14924 1447 aa29.48■■■□□ 2.31
NCKIPSD-206ENST00000439518 PMFBP1Q8TBY8 1022 aa29.48■■■□□ 2.31
NCKIPSD-206ENST00000439518 TRPC5Q9UL62 973 aaPredicted RBP29.48■■■□□ 2.31
NCKIPSD-206ENST00000439518 ARHGEF28Q8N1W1 1705 aaKnown RBP29.48■■■□□ 2.31
NCKIPSD-206ENST00000439518 TULP4Q9NRJ4 1543 aa29.47■■■□□ 2.31
NCKIPSD-206ENST00000439518 KIAA1210Q9ULL0 1709 aa29.47■■■□□ 2.31
NCKIPSD-206ENST00000439518 MARF1Q9Y4F3 1742 aaKnown RBP29.47■■■□□ 2.31
NCKIPSD-206ENST00000439518 UPF1Q92900 1129 aaKnown RBP eCLIP29.46■■■□□ 2.31
NCKIPSD-206ENST00000439518 BCL9LQ86UU0 1499 aa29.46■■■□□ 2.31
NCKIPSD-206ENST00000439518 ATRNO75882 1429 aa29.45■■■□□ 2.31
NCKIPSD-206ENST00000439518 NBPF1Q3BBV0 1214 aa29.42■■■□□ 2.3
NCKIPSD-206ENST00000439518 ARHGEF10O15013 1369 aa29.41■■■□□ 2.3
NCKIPSD-206ENST00000439518 CABLES1Q8TDN4 633 aa29.39■■■□□ 2.3
NCKIPSD-206ENST00000439518 SLIT2O94813 1529 aa29.38■■■□□ 2.29
NCKIPSD-206ENST00000439518 GPRASP1Q5JY77 1395 aa29.38■■■□□ 2.29
NCKIPSD-206ENST00000439518 LMOD2Q6P5Q4 547 aa29.37■■■□□ 2.29
NCKIPSD-206ENST00000439518 L3MBTL2Q969R5 705 aa29.37■■■□□ 2.29
NCKIPSD-206ENST00000439518 TRPM3Q9HCF6 1732 aaPredicted RBP29.37■■■□□ 2.29
NCKIPSD-206ENST00000439518 ATP7BP35670 1465 aa29.36■■■□□ 2.29
NCKIPSD-206ENST00000439518 NUDT16Q96DE0 195 aaKnown RBP29.36■■■□□ 2.29
NCKIPSD-206ENST00000439518 SIN3AQ96ST3 1273 aa29.35■■■□□ 2.29
NCKIPSD-206ENST00000439518 HAP1P54257 671 aaPredicted RBP29.34■■■□□ 2.29
NCKIPSD-206ENST00000439518 UNC5CLQ8IV45 518 aa29.34■■■□□ 2.29
NCKIPSD-206ENST00000439518 CDK19Q9BWU1 502 aa29.34■■■□□ 2.29
NCKIPSD-206ENST00000439518 TNKS1BP1Q9C0C2 1729 aaKnown RBP29.34■■■□□ 2.29
NCKIPSD-206ENST00000439518 NGDNQ8NEJ9 315 aaKnown RBP29.33■■■□□ 2.29
NCKIPSD-206ENST00000439518 GJD4Q96KN9 370 aaPredicted RBP29.33■■■□□ 2.29
NCKIPSD-206ENST00000439518 ABCA3Q99758 1704 aa29.32■■■□□ 2.28
NCKIPSD-206ENST00000439518 ALS2Q96Q42 1657 aa29.31■■■□□ 2.28
NCKIPSD-206ENST00000439518 PLEKHG5O94827 1062 aa29.31■■■□□ 2.28
NCKIPSD-206ENST00000439518 ITSN1Q15811 1721 aa29.29■■■□□ 2.28
NCKIPSD-206ENST00000439518 CENPJQ9HC77 1338 aaPredicted RBP29.26■■■□□ 2.27
NCKIPSD-206ENST00000439518 RALGAPBQ86X10 1494 aa29.26■■■□□ 2.27
NCKIPSD-206ENST00000439518 NEUROD1Q13562 356 aa29.26■■■□□ 2.27
NCKIPSD-206ENST00000439518 CCDC61Q9Y6R9 512 aa29.26■■■□□ 2.27
NCKIPSD-206ENST00000439518 ATAD2Q6PL18 1390 aa29.26■■■□□ 2.27
NCKIPSD-206ENST00000439518 FAM83GA6ND36 823 aa29.25■■■□□ 2.27
NCKIPSD-206ENST00000439518 GLI3P10071 1580 aa29.24■■■□□ 2.27
NCKIPSD-206ENST00000439518 TOPAZ1Q8N9V7 1692 aa29.24■■■□□ 2.27
NCKIPSD-206ENST00000439518 POLR3AO14802 1390 aaPredicted RBP29.24■■■□□ 2.27
NCKIPSD-206ENST00000439518 NWD2Q9ULI1 1742 aa29.23■■■□□ 2.27
NCKIPSD-206ENST00000439518 PLEKHG3A1L390 1219 aa29.23■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms