RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 CERKQ8TCT0 537 aa28.87■■■□□ 2.21
CHD3-204ENST00000439235 CDCA8Q53HL2 280 aa28.85■■■□□ 2.21
CHD3-204ENST00000439235 CCDC7Q96M83 1385 aa28.84■■■□□ 2.21
CHD3-204ENST00000439235 DISP3Q9P2K9 1392 aa28.84■■■□□ 2.21
CHD3-204ENST00000439235 KIF7Q2M1P5 1343 aa28.82■■■□□ 2.2
CHD3-204ENST00000439235 WASHC2AQ641Q2 1341 aa28.82■■■□□ 2.2
CHD3-204ENST00000439235 EVC2Q86UK5 1308 aa28.82■■■□□ 2.2
CHD3-204ENST00000439235 MINK1Q8N4C8 1332 aaPredicted RBP28.82■■■□□ 2.2
CHD3-204ENST00000439235 C11orf95C9JLR9 678 aaPredicted RBP28.81■■■□□ 2.2
CHD3-204ENST00000439235 ADGRB2O60241 1585 aa28.8■■■□□ 2.2
CHD3-204ENST00000439235 TULP4Q9NRJ4 1543 aa28.8■■■□□ 2.2
CHD3-204ENST00000439235 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.75■■■□□ 2.19
CHD3-204ENST00000439235 PUS7Q96PZ0 661 aaKnown RBP28.75■■■□□ 2.19
CHD3-204ENST00000439235 POLR3GLQ9BT43 218 aa28.75■■■□□ 2.19
CHD3-204ENST00000439235 PROSER2Q86WR7 435 aaPredicted RBP28.74■■■□□ 2.19
CHD3-204ENST00000439235 STRCP1A6NGW2 1772 aa28.74■■■□□ 2.19
CHD3-204ENST00000439235 ZNF335Q9H4Z2 1342 aaPredicted RBP28.72■■■□□ 2.19
CHD3-204ENST00000439235 NCOA3Q9Y6Q9 1424 aa28.72■■■□□ 2.19
CHD3-204ENST00000439235 ADGRL3Q9HAR2 1447 aa28.71■■■□□ 2.19
CHD3-204ENST00000439235 WASLO00401 505 aaPredicted RBP28.7■■■□□ 2.18
CHD3-204ENST00000439235 SRPK2P78362 688 aaKnown RBP28.7■■■□□ 2.18
CHD3-204ENST00000439235 ILDR2Q71H61 639 aa28.69■■■□□ 2.18
CHD3-204ENST00000439235 NALCNQ8IZF0 1738 aa28.69■■■□□ 2.18
CHD3-204ENST00000439235 CDC42BPGQ6DT37 1551 aa28.68■■■□□ 2.18
CHD3-204ENST00000439235 ATAD2Q6PL18 1390 aa28.68■■■□□ 2.18
CHD3-204ENST00000439235 CDK19Q9BWU1 502 aa28.68■■■□□ 2.18
CHD3-204ENST00000439235 C14orf37Q86TY3 774 aa28.67■■■□□ 2.18
CHD3-204ENST00000439235 TMEM94Q12767 1356 aa28.66■■■□□ 2.18
CHD3-204ENST00000439235 CABP2Q9NPB3 220 aa28.65■■■□□ 2.18
CHD3-204ENST00000439235 LRRC7Q96NW7 1537 aa28.64■■■□□ 2.17
CHD3-204ENST00000439235 DDX10Q13206 875 aaKnown RBP28.63■■■□□ 2.17
CHD3-204ENST00000439235 NINLQ9Y2I6 1382 aa28.62■■■□□ 2.17
CHD3-204ENST00000439235 SOCS7O14512 581 aa28.62■■■□□ 2.17
CHD3-204ENST00000439235 RBM33Q96EV2 1170 aaKnown RBP28.62■■■□□ 2.17
CHD3-204ENST00000439235 MYOM1P52179 1685 aa28.61■■■□□ 2.17
CHD3-204ENST00000439235 DCCP43146 1447 aa28.6■■■□□ 2.17
CHD3-204ENST00000439235 ANKARQ7Z5J8 1434 aa28.59■■■□□ 2.17
CHD3-204ENST00000439235 ATP7BP35670 1465 aa28.59■■■□□ 2.17
CHD3-204ENST00000439235 FMN2Q9NZ56 1722 aa28.58■■■□□ 2.17
CHD3-204ENST00000439235 C19orf44Q9H6X5 657 aa28.58■■■□□ 2.17
CHD3-204ENST00000439235 MSH6P52701 1360 aa28.57■■■□□ 2.16
CHD3-204ENST00000439235 TMC1Q8TDI8 760 aa28.55■■■□□ 2.16
CHD3-204ENST00000439235 NUDT16Q96DE0 195 aaKnown RBP28.55■■■□□ 2.16
CHD3-204ENST00000439235 LTBP4Q8N2S1 1624 aa28.54■■■□□ 2.16
CHD3-204ENST00000439235 CCDC61Q9Y6R9 512 aa28.53■■■□□ 2.16
CHD3-204ENST00000439235 TOPAZ1Q8N9V7 1692 aa28.52■■■□□ 2.16
CHD3-204ENST00000439235 PRR36Q9H6K5 1346 aa28.52■■■□□ 2.16
CHD3-204ENST00000439235 DIEXFQ68CQ4 756 aaKnown RBP28.52■■■□□ 2.16
CHD3-204ENST00000439235 XIRP1Q702N8 1843 aaKnown RBP28.52■■■□□ 2.16
CHD3-204ENST00000439235 PPIP5K1Q6PFW1 1433 aa28.52■■■□□ 2.16
CHD3-204ENST00000439235 USP32Q8NFA0 1604 aa28.51■■■□□ 2.15
CHD3-204ENST00000439235 ITSN1Q15811 1721 aa28.51■■■□□ 2.15
CHD3-204ENST00000439235 ATF3P18847 181 aa28.5■■■□□ 2.15
CHD3-204ENST00000439235 SLC12A5Q9H2X9 1139 aa28.5■■■□□ 2.15
CHD3-204ENST00000439235 CADPS2Q86UW7 1296 aa28.49■■■□□ 2.15
CHD3-204ENST00000439235 ANKRD36BQ8N2N9 1353 aa28.49■■■□□ 2.15
CHD3-204ENST00000439235 NUTM2FA1L443 756 aa28.48■■■□□ 2.15
CHD3-204ENST00000439235 PANK3Q9H999 370 aa28.48■■■□□ 2.15
CHD3-204ENST00000439235 TERF2IPQ9NYB0 399 aa28.47■■■□□ 2.15
CHD3-204ENST00000439235 CABP1Q9NZU7 370 aa28.47■■■□□ 2.15
CHD3-204ENST00000439235 HDGFL2Q7Z4V5 671 aaPredicted RBP28.44■■■□□ 2.14
CHD3-204ENST00000439235 MST1RQ04912 1400 aa28.43■■■□□ 2.14
CHD3-204ENST00000439235 C1orf167Q5SNV9 1468 aa28.42■■■□□ 2.14
CHD3-204ENST00000439235 PLEKHG3A1L390 1219 aa28.42■■■□□ 2.14
CHD3-204ENST00000439235 CD163L1Q9NR16 1453 aa28.41■■■□□ 2.14
CHD3-204ENST00000439235 A0A1W2PP64 1363 aa28.41■■■□□ 2.14
CHD3-204ENST00000439235 CPSF1Q10570 1443 aaKnown RBP28.39■■■□□ 2.14
CHD3-204ENST00000439235 KNSTRNQ9Y448 316 aa28.38■■■□□ 2.13
CHD3-204ENST00000439235 NSD3Q9BZ95 1437 aa28.37■■■□□ 2.13
CHD3-204ENST00000439235 RGPD8O14715 1765 aaPredicted RBP28.37■■■□□ 2.13
CHD3-204ENST00000439235 PER1O15534 1290 aaPredicted RBP28.36■■■□□ 2.13
CHD3-204ENST00000439235 PHF8Q9UPP1 1060 aa28.36■■■□□ 2.13
CHD3-204ENST00000439235 POLR3AO14802 1390 aaPredicted RBP28.36■■■□□ 2.13
CHD3-204ENST00000439235 KIF1AQ12756 1690 aa28.35■■■□□ 2.13
CHD3-204ENST00000439235 ESCO1Q5FWF5 840 aa28.35■■■□□ 2.13
CHD3-204ENST00000439235 ZNF692Q9BU19 519 aaPredicted RBP28.35■■■□□ 2.13
CHD3-204ENST00000439235 ACEP12821 1306 aa28.35■■■□□ 2.13
CHD3-204ENST00000439235 KTN1Q86UP2 1357 aaKnown RBP28.35■■■□□ 2.13
CHD3-204ENST00000439235 CARD14Q9BXL6 1004 aa28.34■■■□□ 2.13
CHD3-204ENST00000439235 AKAP12Q02952 1782 aa28.34■■■□□ 2.13
CHD3-204ENST00000439235 NGDNQ8NEJ9 315 aaKnown RBP28.33■■■□□ 2.13
CHD3-204ENST00000439235 PMFBP1Q8TBY8 1022 aa28.33■■■□□ 2.13
CHD3-204ENST00000439235 MON2Q7Z3U7 1717 aa28.32■■■□□ 2.12
CHD3-204ENST00000439235 EDC4Q6P2E9 1401 aaKnown RBP28.32■■■□□ 2.12
CHD3-204ENST00000439235 IQSEC2Q5JU85 1478 aa28.32■■■□□ 2.12
CHD3-204ENST00000439235 USP6P35125 1406 aa28.3■■■□□ 2.12
CHD3-204ENST00000439235 ANP32CO43423 234 aa28.3■■■□□ 2.12
CHD3-204ENST00000439235 ORAI2Q96SN7 254 aa28.3■■■□□ 2.12
CHD3-204ENST00000439235 NPC1L1Q9UHC9 1359 aa28.29■■■□□ 2.12
CHD3-204ENST00000439235 CGNL1Q0VF96 1302 aa28.29■■■□□ 2.12
CHD3-204ENST00000439235 SLAIN2Q9P270 581 aa28.29■■■□□ 2.12
CHD3-204ENST00000439235 BRD4O60885 1362 aaPredicted RBP28.27■■■□□ 2.12
CHD3-204ENST00000439235 NRKQ7Z2Y5 1582 aa28.26■■■□□ 2.11
CHD3-204ENST00000439235 AMER1Q5JTC6 1135 aaPredicted RBP28.26■■■□□ 2.11
CHD3-204ENST00000439235 NSD2O96028 1365 aa28.25■■■□□ 2.11
CHD3-204ENST00000439235 TTC21AQ8NDW8 1320 aa28.21■■■□□ 2.11
CHD3-204ENST00000439235 SSH2Q76I76 1423 aa28.21■■■□□ 2.11
CHD3-204ENST00000439235 BRINP3Q76B58 766 aa28.21■■■□□ 2.11
CHD3-204ENST00000439235 TTC21BQ7Z4L5 1316 aa28.2■■■□□ 2.11
CHD3-204ENST00000439235 PSME1Q06323 249 aa28.2■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms