RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 SLC4A1APQ9BWU0 796 aaKnown RBP17.98■□□□□ 0.47
PTPRF-208ENST00000437607 EP400Q96L91 3159 aa17.97■□□□□ 0.47
PTPRF-208ENST00000437607 FOXD1Q16676 465 aa17.96■□□□□ 0.47
PTPRF-208ENST00000437607 QTRT2Q9H974 415 aaKnown RBP17.96■□□□□ 0.47
PTPRF-208ENST00000437607 FMN2Q9NZ56 1722 aa17.95■□□□□ 0.46
PTPRF-208ENST00000437607 ADAMTS2O95450 1211 aa17.94■□□□□ 0.46
PTPRF-208ENST00000437607 RBM6P78332 1123 aaKnown RBP17.94■□□□□ 0.46
PTPRF-208ENST00000437607 SPATA31E1Q6ZUB1 1445 aa17.94■□□□□ 0.46
PTPRF-208ENST00000437607 PXDNQ92626 1479 aa17.94■□□□□ 0.46
PTPRF-208ENST00000437607 ADGRF5Q8IZF2 1346 aa17.93■□□□□ 0.46
PTPRF-208ENST00000437607 NGLY1Q96IV0 654 aa17.92■□□□□ 0.46
PTPRF-208ENST00000437607 TECPR2O15040 1411 aa17.91■□□□□ 0.46
PTPRF-208ENST00000437607 MYOM2P54296 1465 aa17.91■□□□□ 0.46
PTPRF-208ENST00000437607 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.91■□□□□ 0.46
PTPRF-208ENST00000437607 RAB3GAP2Q9H2M9 1393 aa17.91■□□□□ 0.46
PTPRF-208ENST00000437607 CCDC144AA2RUR9 1427 aa17.89■□□□□ 0.45
PTPRF-208ENST00000437607 KIF1AQ12756 1690 aa17.88■□□□□ 0.45
PTPRF-208ENST00000437607 FNBP4Q8N3X1 1017 aaPredicted RBP17.88■□□□□ 0.45
PTPRF-208ENST00000437607 ATRNO75882 1429 aa17.88■□□□□ 0.45
PTPRF-208ENST00000437607 WAPLQ7Z5K2 1190 aa17.87■□□□□ 0.45
PTPRF-208ENST00000437607 USP21Q9UK80 565 aa17.87■□□□□ 0.45
PTPRF-208ENST00000437607 LRPPRCP42704 1394 aaKnown RBP17.87■□□□□ 0.45
PTPRF-208ENST00000437607 PLEKHH1Q9ULM0 1364 aa17.87■□□□□ 0.45
PTPRF-208ENST00000437607 PIK3C2GO75747 1445 aa17.87■□□□□ 0.45
PTPRF-208ENST00000437607 SRCAPQ6ZRS2 3230 aa17.87■□□□□ 0.45
PTPRF-208ENST00000437607 BRWD3Q6RI45 1802 aa17.86■□□□□ 0.45
PTPRF-208ENST00000437607 RGL3Q3MIN7 710 aa17.86■□□□□ 0.45
PTPRF-208ENST00000437607 ESCO1Q5FWF5 840 aa17.86■□□□□ 0.45
PTPRF-208ENST00000437607 NPHP3Q7Z494 1330 aa17.85■□□□□ 0.45
PTPRF-208ENST00000437607 BCL9LQ86UU0 1499 aa17.85■□□□□ 0.45
PTPRF-208ENST00000437607 ABCC11Q96J66 1382 aa17.85■□□□□ 0.45
PTPRF-208ENST00000437607 MPHOSPH9Q99550 1183 aa17.85■□□□□ 0.45
PTPRF-208ENST00000437607 ANKRD30BQ9BXX2 1392 aa17.85■□□□□ 0.45
PTPRF-208ENST00000437607 STK26Q9P289 416 aa17.85■□□□□ 0.45
PTPRF-208ENST00000437607 ABCA3Q99758 1704 aa17.84■□□□□ 0.45
PTPRF-208ENST00000437607 XPCQ01831 940 aaPredicted RBP17.84■□□□□ 0.45
PTPRF-208ENST00000437607 TMEM132EQ6IEE7 984 aa17.84■□□□□ 0.45
PTPRF-208ENST00000437607 TRPC5Q9UL62 973 aaPredicted RBP17.84■□□□□ 0.45
PTPRF-208ENST00000437607 NUTM2FA1L443 756 aa17.83■□□□□ 0.44
PTPRF-208ENST00000437607 FOXO3O43524 673 aa17.83■□□□□ 0.44
PTPRF-208ENST00000437607 YTHDC2Q9H6S0 1430 aaKnown RBP17.82■□□□□ 0.44
PTPRF-208ENST00000437607 ATAD2Q6PL18 1390 aa17.81■□□□□ 0.44
PTPRF-208ENST00000437607 USP32Q8NFA0 1604 aa17.81■□□□□ 0.44
PTPRF-208ENST00000437607 GLI3P10071 1580 aa17.81■□□□□ 0.44
PTPRF-208ENST00000437607 NRXN1Q9ULB1 1477 aa17.81■□□□□ 0.44
PTPRF-208ENST00000437607 PLCH1Q4KWH8 1693 aa17.8■□□□□ 0.44
PTPRF-208ENST00000437607 ACIN1Q9UKV3 1341 aaKnown RBP17.79■□□□□ 0.44
PTPRF-208ENST00000437607 HRCP23327 699 aa17.78■□□□□ 0.44
PTPRF-208ENST00000437607 NWD2Q9ULI1 1742 aa17.78■□□□□ 0.44
PTPRF-208ENST00000437607 SLIT2O94813 1529 aa17.77■□□□□ 0.44
PTPRF-208ENST00000437607 SPATA31A3Q5VYP0 1347 aa17.76■□□□□ 0.43
PTPRF-208ENST00000437607 C14orf93Q9H972 538 aaKnown RBP17.75■□□□□ 0.43
PTPRF-208ENST00000437607 TRPM3Q9HCF6 1732 aaPredicted RBP17.75■□□□□ 0.43
PTPRF-208ENST00000437607 SIRT1Q96EB6 747 aa17.74■□□□□ 0.43
PTPRF-208ENST00000437607 GJD4Q96KN9 370 aaPredicted RBP17.74■□□□□ 0.43
PTPRF-208ENST00000437607 RALGAPBQ86X10 1494 aa17.74■□□□□ 0.43
PTPRF-208ENST00000437607 CFAP70Q5T0N1 1121 aa17.73■□□□□ 0.43
PTPRF-208ENST00000437607 ADGRB2O60241 1585 aa17.73■□□□□ 0.43
PTPRF-208ENST00000437607 DLC1Q96QB1 1528 aa17.72■□□□□ 0.43
PTPRF-208ENST00000437607 KRT28Q7Z3Y7 464 aa17.72■□□□□ 0.43
PTPRF-208ENST00000437607 NRAPQ86VF7 1730 aa17.72■□□□□ 0.43
PTPRF-208ENST00000437607 TNS3Q68CZ2 1445 aa17.72■□□□□ 0.43
PTPRF-208ENST00000437607 ALS2Q96Q42 1657 aa17.71■□□□□ 0.43
PTPRF-208ENST00000437607 ADGRB1O14514 1584 aa17.71■□□□□ 0.43
PTPRF-208ENST00000437607 DHX57Q6P158 1386 aaKnown RBP17.71■□□□□ 0.43
PTPRF-208ENST00000437607 CRYBG1Q9Y4K1 1723 aa17.71■□□□□ 0.43
PTPRF-208ENST00000437607 UNC5CLQ8IV45 518 aa17.7■□□□□ 0.42
PTPRF-208ENST00000437607 CCER1Q8TC90 406 aaPredicted RBP17.7■□□□□ 0.42
PTPRF-208ENST00000437607 PHF8Q9UPP1 1060 aa17.69■□□□□ 0.42
PTPRF-208ENST00000437607 SBNO1A3KN83 1393 aa17.67■□□□□ 0.42
PTPRF-208ENST00000437607 SAFB2Q14151 953 aaKnown RBP eCLIP17.67■□□□□ 0.42
PTPRF-208ENST00000437607 CABLES1Q8TDN4 633 aa17.67■□□□□ 0.42
PTPRF-208ENST00000437607 PRAM1Q96QH2 718 aa17.67■□□□□ 0.42
PTPRF-208ENST00000437607 ARHGEF28Q8N1W1 1705 aaKnown RBP17.67■□□□□ 0.42
PTPRF-208ENST00000437607 CCDC125Q86Z20 511 aa17.65■□□□□ 0.42
PTPRF-208ENST00000437607 ANKARQ7Z5J8 1434 aa17.64■□□□□ 0.42
PTPRF-208ENST00000437607 ITSN1Q15811 1721 aa17.64■□□□□ 0.41
PTPRF-208ENST00000437607 PSME1Q06323 249 aa17.64■□□□□ 0.41
PTPRF-208ENST00000437607 COL14A1Q05707 1796 aaKnown RBP17.63■□□□□ 0.41
PTPRF-208ENST00000437607 BLMP54132 1417 aaPredicted RBP17.63■□□□□ 0.41
PTPRF-208ENST00000437607 PLEKHG5O94827 1062 aa17.62■□□□□ 0.41
PTPRF-208ENST00000437607 VPS72Q15906 364 aa17.62■□□□□ 0.41
PTPRF-208ENST00000437607 PMFBP1Q8TBY8 1022 aa17.62■□□□□ 0.41
PTPRF-208ENST00000437607 ZRANB1Q9UGI0 708 aa17.62■□□□□ 0.41
PTPRF-208ENST00000437607 ARHGEF10O15013 1369 aa17.62■□□□□ 0.41
PTPRF-208ENST00000437607 TULP4Q9NRJ4 1543 aa17.62■□□□□ 0.41
PTPRF-208ENST00000437607 SEPT12Q8IYM1 358 aa17.6■□□□□ 0.41
PTPRF-208ENST00000437607 POGKQ9P215 609 aa17.6■□□□□ 0.41
PTPRF-208ENST00000437607 PRR36Q9H6K5 1346 aa17.6■□□□□ 0.41
PTPRF-208ENST00000437607 CLSPNQ9HAW4 1339 aa17.6■□□□□ 0.41
PTPRF-208ENST00000437607 FAM83GA6ND36 823 aa17.59■□□□□ 0.41
PTPRF-208ENST00000437607 ONECUT3O60422 494 aaPredicted RBP17.59■□□□□ 0.41
PTPRF-208ENST00000437607 HAP1P54257 671 aaPredicted RBP17.59■□□□□ 0.41
PTPRF-208ENST00000437607 LMOD2Q6P5Q4 547 aa17.59■□□□□ 0.41
PTPRF-208ENST00000437607 TRAK1Q9UPV9 953 aa17.59■□□□□ 0.41
PTPRF-208ENST00000437607 PHRF1Q9P1Y6 1649 aaKnown RBP17.58■□□□□ 0.41
PTPRF-208ENST00000437607 HIRIP3Q9BW71 556 aaPredicted RBP17.58■□□□□ 0.4
PTPRF-208ENST00000437607 MINK1Q8N4C8 1332 aaPredicted RBP17.57■□□□□ 0.4
PTPRF-208ENST00000437607 DEFB132Q7Z7B7 95 aa17.57■□□□□ 0.4
PTPRF-208ENST00000437607 RGPD1P0DJD0 1748 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms