RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 MSNP26038 577 aaKnown RBP8.04□□□□□ -1.12
MCF2-205ENST00000437564 SWT1Q5T5J6 900 aaKnown RBP8.04□□□□□ -1.12
MCF2-205ENST00000437564 SASS6Q6UVJ0 657 aa8.04□□□□□ -1.12
MCF2-205ENST00000437564 FEZ1Q99689 392 aa8.04□□□□□ -1.12
MCF2-205ENST00000437564 POGKQ9P215 609 aa8.04□□□□□ -1.12
MCF2-205ENST00000437564 IGF1RP08069 1367 aa8.03□□□□□ -1.12
MCF2-205ENST00000437564 ANP32CO43423 234 aa8.03□□□□□ -1.12
MCF2-205ENST00000437564 RAD21O60216 631 aa8.03□□□□□ -1.12
MCF2-205ENST00000437564 CAPN2P17655 700 aa8.03□□□□□ -1.12
MCF2-205ENST00000437564 GUCY2CP25092 1073 aa8.03□□□□□ -1.12
MCF2-205ENST00000437564 ICE2Q659A1 982 aa8.03□□□□□ -1.12
MCF2-205ENST00000437564 ARHGEF1Q92888 912 aaKnown RBP8.03□□□□□ -1.12
MCF2-205ENST00000437564 BORCS6Q96GS4 357 aa8.03□□□□□ -1.12
MCF2-205ENST00000437564 NOP2P46087 812 aaKnown RBP8.02□□□□□ -1.12
MCF2-205ENST00000437564 CADPS2Q86UW7 1296 aa8.02□□□□□ -1.12
MCF2-205ENST00000437564 FAM212AQ96EL1 285 aa8.02□□□□□ -1.12
MCF2-205ENST00000437564 ANAPC4Q9UJX5 808 aa8.02□□□□□ -1.12
MCF2-205ENST00000437564 IPO8O15397 1037 aaKnown RBP8.02□□□□□ -1.13
MCF2-205ENST00000437564 COQ9O75208 318 aa8.02□□□□□ -1.13
MCF2-205ENST00000437564 IPO7O95373 1038 aaKnown RBP8.02□□□□□ -1.13
MCF2-205ENST00000437564 POLD1P28340 1107 aa8.02□□□□□ -1.13
MCF2-205ENST00000437564 RBM25P49756 843 aaKnown RBP8.02□□□□□ -1.13
MCF2-205ENST00000437564 CBX1P83916 185 aa8.02□□□□□ -1.13
MCF2-205ENST00000437564 BECN1Q14457 450 aa8.02□□□□□ -1.13
MCF2-205ENST00000437564 ZRSR2Q15696 482 aaKnown RBP8.02□□□□□ -1.13
MCF2-205ENST00000437564 UVSSAQ2YD98 709 aa8.02□□□□□ -1.13
MCF2-205ENST00000437564 POTEGQ6S5H5 508 aa8.02□□□□□ -1.13
MCF2-205ENST00000437564 MCM5P33992 734 aa8.01□□□□□ -1.13
MCF2-205ENST00000437564 FOXD4L6Q3SYB3 417 aaPredicted RBP8.01□□□□□ -1.13
MCF2-205ENST00000437564 LRCH2Q5VUJ6 765 aa8.01□□□□□ -1.13
MCF2-205ENST00000437564 FOXD4L3Q6VB84 417 aaPredicted RBP8.01□□□□□ -1.13
MCF2-205ENST00000437564 RPAINQ86UA6 219 aa8.01□□□□□ -1.13
MCF2-205ENST00000437564 KCTD17Q8N5Z5 321 aa8.01□□□□□ -1.13
MCF2-205ENST00000437564 JMYQ8N9B5 988 aa8.01□□□□□ -1.13
MCF2-205ENST00000437564 DCBLD2Q96PD2 775 aa8.01□□□□□ -1.13
MCF2-205ENST00000437564 UNC13AQ9UPW8 1703 aa8.01□□□□□ -1.13
MCF2-205ENST00000437564 R3HCC1Q9Y3T6 440 aaKnown RBP8.01□□□□□ -1.13
MCF2-205ENST00000437564 RIPOR2Q9Y4F9 1068 aa8.01□□□□□ -1.13
MCF2-205ENST00000437564 NACADO15069 1562 aa8.01□□□□□ -1.13
MCF2-205ENST00000437564 MNX1P50219 401 aaPredicted RBP8.01□□□□□ -1.13
MCF2-205ENST00000437564 CCDC173Q0VFZ6 552 aa8.01□□□□□ -1.13
MCF2-205ENST00000437564 ZC3H12AQ5D1E8 599 aaKnown RBP8.01□□□□□ -1.13
MCF2-205ENST00000437564 ZNF428Q96B54 188 aa8.01□□□□□ -1.13
MCF2-205ENST00000437564 CALR3Q96L12 384 aaKnown RBP8.01□□□□□ -1.13
MCF2-205ENST00000437564 SUDS3Q9H7L9 328 aaPredicted RBP8.01□□□□□ -1.13
MCF2-205ENST00000437564 C11orf91Q3C1V1 193 aa8□□□□□ -1.13
MCF2-205ENST00000437564 GRPEL1Q9HAV7 217 aa8□□□□□ -1.13
MCF2-205ENST00000437564 PAXBP1Q9Y5B6 917 aa8□□□□□ -1.13
MCF2-205ENST00000437564 DDX46Q7L014 1031 aaKnown RBP7.99□□□□□ -1.13
MCF2-205ENST00000437564 WDR70Q9NW82 654 aa7.99□□□□□ -1.13
MCF2-205ENST00000437564 CCDC189A1A4V9 331 aa7.99□□□□□ -1.13
MCF2-205ENST00000437564 SCP2P22307 547 aa7.99□□□□□ -1.13
MCF2-205ENST00000437564 HMGN5P82970 282 aaKnown RBP7.99□□□□□ -1.13
MCF2-205ENST00000437564 ZBTB9Q96C00 473 aa7.99□□□□□ -1.13
MCF2-205ENST00000437564 PPP1R9BQ96SB3 815 aa7.99□□□□□ -1.13
MCF2-205ENST00000437564 UPF2Q9HAU5 1272 aaKnown RBP7.99□□□□□ -1.13
MCF2-205ENST00000437564 DHX16O60231 1041 aaKnown RBP7.98□□□□□ -1.13
MCF2-205ENST00000437564 ERCC3P19447 782 aa7.98□□□□□ -1.13
MCF2-205ENST00000437564 RASEFQ8IZ41 740 aa7.98□□□□□ -1.13
MCF2-205ENST00000437564 PANK2Q9BZ23 570 aa7.98□□□□□ -1.13
MCF2-205ENST00000437564 NUCKS1Q9H1E3 243 aaKnown RBP7.98□□□□□ -1.13
MCF2-205ENST00000437564 CCDC196A0A1B0GTZ2 297 aa7.97□□□□□ -1.13
MCF2-205ENST00000437564 GTF2F1P35269 517 aaKnown RBP eCLIP7.97□□□□□ -1.13
MCF2-205ENST00000437564 CCDC91Q7Z6B0 441 aa7.97□□□□□ -1.13
MCF2-205ENST00000437564 CCDC97Q96F63 343 aaPredicted RBP7.97□□□□□ -1.13
MCF2-205ENST00000437564 OTUD5Q96G74 571 aa7.97□□□□□ -1.13
MCF2-205ENST00000437564 OGFRQ9NZT2 677 aa7.97□□□□□ -1.13
MCF2-205ENST00000437564 SMC3Q9UQE7 1217 aa7.97□□□□□ -1.13
MCF2-205ENST00000437564 MTMR7Q9Y216 660 aa7.97□□□□□ -1.13
MCF2-205ENST00000437564 RNF123Q5XPI4 1314 aa7.97□□□□□ -1.13
MCF2-205ENST00000437564 CADPSQ9ULU8 1353 aa7.97□□□□□ -1.13
MCF2-205ENST00000437564 GOLGA6CA6NDK9 693 aa7.97□□□□□ -1.13
MCF2-205ENST00000437564 GOLGA6BA6NDN3 693 aa7.97□□□□□ -1.13
MCF2-205ENST00000437564 TPM3P06753 285 aa7.97□□□□□ -1.13
MCF2-205ENST00000437564 GOLGA6DP0CG33 693 aa7.97□□□□□ -1.13
MCF2-205ENST00000437564 ZC3H15Q8WU90 426 aaKnown RBP7.97□□□□□ -1.13
MCF2-205ENST00000437564 PRIMPOLQ96LW4 560 aa7.97□□□□□ -1.13
MCF2-205ENST00000437564 RASSF4Q9H2L5 321 aa7.97□□□□□ -1.13
MCF2-205ENST00000437564 CREBZFQ9NS37 354 aa7.97□□□□□ -1.13
MCF2-205ENST00000437564 GOLGA6AQ9NYA3 693 aa7.97□□□□□ -1.13
MCF2-205ENST00000437564 SUFUQ9UMX1 484 aa7.97□□□□□ -1.13
MCF2-205ENST00000437564 PEG3Q9GZU2 1588 aa7.96□□□□□ -1.13
MCF2-205ENST00000437564 CD44P16070 742 aaKnown RBP7.96□□□□□ -1.14
MCF2-205ENST00000437564 MYRIPQ8NFW9 859 aa7.96□□□□□ -1.14
MCF2-205ENST00000437564 ERCC4Q92889 916 aaPredicted RBP7.96□□□□□ -1.14
MCF2-205ENST00000437564 PYGBP11216 843 aa7.95□□□□□ -1.14
MCF2-205ENST00000437564 HNRNPUQ00839 825 aaKnown RBP eCLIP7.95□□□□□ -1.14
MCF2-205ENST00000437564 CHADLQ6NUI6 762 aa7.95□□□□□ -1.14
MCF2-205ENST00000437564 DNAJC14Q6Y2X3 702 aaPredicted RBP7.95□□□□□ -1.14
MCF2-205ENST00000437564 NME8Q8N427 588 aa7.95□□□□□ -1.14
MCF2-205ENST00000437564 PDCL2Q8N4E4 241 aa7.95□□□□□ -1.14
MCF2-205ENST00000437564 RSPH14Q9UHP6 348 aa7.95□□□□□ -1.14
MCF2-205ENST00000437564 GOLGA6L6A8MZA4 724 aa7.95□□□□□ -1.14
MCF2-205ENST00000437564 GOLGA6L22H0YM25 854 aa7.95□□□□□ -1.14
MCF2-205ENST00000437564 HSPA5P11021 654 aaKnown RBP7.95□□□□□ -1.14
MCF2-205ENST00000437564 CD151P48509 253 aa7.95□□□□□ -1.14
MCF2-205ENST00000437564 MLECQ14165 292 aa7.95□□□□□ -1.14
MCF2-205ENST00000437564 ATP2B3Q16720 1220 aa7.95□□□□□ -1.14
MCF2-205ENST00000437564 C1QTNF12Q5T7M4 302 aa7.95□□□□□ -1.14
MCF2-205ENST00000437564 CCDC125Q86Z20 511 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms