RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 SLAIN2Q9P270 581 aa16.55■□□□□ 0.24
COL28A1-203ENST00000435823 KNDC1Q76NI1 1749 aa16.55■□□□□ 0.24
COL28A1-203ENST00000435823 HSPA1LP34931 641 aa16.54■□□□□ 0.24
COL28A1-203ENST00000435823 NALCNQ8IZF0 1738 aa16.53■□□□□ 0.24
COL28A1-203ENST00000435823 ROBO1Q9Y6N7 1651 aa16.53■□□□□ 0.24
COL28A1-203ENST00000435823 ADGRB1O14514 1584 aa16.51■□□□□ 0.23
COL28A1-203ENST00000435823 L3MBTL2Q969R5 705 aa16.5■□□□□ 0.23
COL28A1-203ENST00000435823 SIRT1Q96EB6 747 aa16.5■□□□□ 0.23
COL28A1-203ENST00000435823 WAPLQ7Z5K2 1190 aa16.49■□□□□ 0.23
COL28A1-203ENST00000435823 MST1RQ04912 1400 aa16.48■□□□□ 0.23
COL28A1-203ENST00000435823 DLC1Q96QB1 1528 aa16.48■□□□□ 0.23
COL28A1-203ENST00000435823 KIAA1210Q9ULL0 1709 aa16.48■□□□□ 0.23
COL28A1-203ENST00000435823 PLEKHH1Q9ULM0 1364 aa16.47■□□□□ 0.23
COL28A1-203ENST00000435823 CDC42BPGQ6DT37 1551 aa16.47■□□□□ 0.23
COL28A1-203ENST00000435823 POGKQ9P215 609 aa16.46■□□□□ 0.23
COL28A1-203ENST00000435823 TRAK1Q9UPV9 953 aa16.46■□□□□ 0.23
COL28A1-203ENST00000435823 PRAM1Q96QH2 718 aa16.45■□□□□ 0.22
COL28A1-203ENST00000435823 TONSLQ96HA7 1378 aa16.45■□□□□ 0.22
COL28A1-203ENST00000435823 BRINP3Q76B58 766 aa16.44■□□□□ 0.22
COL28A1-203ENST00000435823 C1orf167Q5SNV9 1468 aa16.43■□□□□ 0.22
COL28A1-203ENST00000435823 PHLPP1O60346 1717 aa16.43■□□□□ 0.22
COL28A1-203ENST00000435823 SAFB2Q14151 953 aaKnown RBP eCLIP16.42■□□□□ 0.22
COL28A1-203ENST00000435823 AHDC1Q5TGY3 1603 aaPredicted RBP16.41■□□□□ 0.22
COL28A1-203ENST00000435823 NBPF1Q3BBV0 1214 aa16.4■□□□□ 0.22
COL28A1-203ENST00000435823 ARHGEF28Q8N1W1 1705 aaKnown RBP16.39■□□□□ 0.21
COL28A1-203ENST00000435823 TRPM1Q7Z4N2 1603 aa16.38■□□□□ 0.21
COL28A1-203ENST00000435823 FMN2Q9NZ56 1722 aa16.38■□□□□ 0.21
COL28A1-203ENST00000435823 CLSPNQ9HAW4 1339 aa16.38■□□□□ 0.21
COL28A1-203ENST00000435823 COL16A1Q07092 1604 aaPredicted RBP16.37■□□□□ 0.21
COL28A1-203ENST00000435823 NUTM2FA1L443 756 aa16.37■□□□□ 0.21
COL28A1-203ENST00000435823 ESCO1Q5FWF5 840 aa16.37■□□□□ 0.21
COL28A1-203ENST00000435823 ORAI2Q96SN7 254 aa16.37■□□□□ 0.21
COL28A1-203ENST00000435823 ADGRB2O60241 1585 aa16.37■□□□□ 0.21
COL28A1-203ENST00000435823 MINK1Q8N4C8 1332 aaPredicted RBP16.37■□□□□ 0.21
COL28A1-203ENST00000435823 NHSL1Q5SYE7 1610 aa16.37■□□□□ 0.21
COL28A1-203ENST00000435823 ROCK2O75116 1388 aaKnown RBP16.37■□□□□ 0.21
COL28A1-203ENST00000435823 HIRIP3Q9BW71 556 aaPredicted RBP16.35■□□□□ 0.21
COL28A1-203ENST00000435823 EIF3AQ14152 1382 aaKnown RBP16.35■□□□□ 0.21
COL28A1-203ENST00000435823 JCADQ9P266 1359 aa16.35■□□□□ 0.21
COL28A1-203ENST00000435823 DISP3Q9P2K9 1392 aa16.34■□□□□ 0.21
COL28A1-203ENST00000435823 NBPF8Q3BBV2 869 aa16.33■□□□□ 0.2
COL28A1-203ENST00000435823 CCER1Q8TC90 406 aaPredicted RBP16.33■□□□□ 0.2
COL28A1-203ENST00000435823 MED1Q15648 1581 aaPredicted RBP16.33■□□□□ 0.2
COL28A1-203ENST00000435823 KIF1AQ12756 1690 aa16.32■□□□□ 0.2
COL28A1-203ENST00000435823 NPHP3Q7Z494 1330 aa16.32■□□□□ 0.2
COL28A1-203ENST00000435823 ANKARQ7Z5J8 1434 aa16.32■□□□□ 0.2
COL28A1-203ENST00000435823 DDX17Q92841 729 aaKnown RBP16.32■□□□□ 0.2
COL28A1-203ENST00000435823 LRRC59Q96AG4 307 aaKnown RBP16.32■□□□□ 0.2
COL28A1-203ENST00000435823 CENPJQ9HC77 1338 aaPredicted RBP16.32■□□□□ 0.2
COL28A1-203ENST00000435823 WASLO00401 505 aaPredicted RBP16.31■□□□□ 0.2
COL28A1-203ENST00000435823 RALGAPBQ86X10 1494 aa16.3■□□□□ 0.2
COL28A1-203ENST00000435823 TIMELESSQ9UNS1 1208 aa16.3■□□□□ 0.2
COL28A1-203ENST00000435823 SHPRHQ149N8 1683 aa16.3■□□□□ 0.2
COL28A1-203ENST00000435823 TULP4Q9NRJ4 1543 aa16.29■□□□□ 0.2
COL28A1-203ENST00000435823 GPRASP1Q5JY77 1395 aa16.29■□□□□ 0.2
COL28A1-203ENST00000435823 RGPD8O14715 1765 aaPredicted RBP16.29■□□□□ 0.2
COL28A1-203ENST00000435823 SOS2Q07890 1332 aaPredicted RBP16.29■□□□□ 0.2
COL28A1-203ENST00000435823 FOXO3O43524 673 aa16.29■□□□□ 0.2
COL28A1-203ENST00000435823 PHF8Q9UPP1 1060 aa16.29■□□□□ 0.2
COL28A1-203ENST00000435823 SPATA31A6Q5VVP1 1343 aa16.28■□□□□ 0.2
COL28A1-203ENST00000435823 CARD11Q9BXL7 1154 aa16.28■□□□□ 0.2
COL28A1-203ENST00000435823 QRICH2Q9H0J4 1663 aa16.27■□□□□ 0.2
COL28A1-203ENST00000435823 USP32Q8NFA0 1604 aa16.27■□□□□ 0.19
COL28A1-203ENST00000435823 CDK19Q9BWU1 502 aa16.26■□□□□ 0.19
COL28A1-203ENST00000435823 PXDNQ92626 1479 aa16.25■□□□□ 0.19
COL28A1-203ENST00000435823 ITSN1Q15811 1721 aa16.25■□□□□ 0.19
COL28A1-203ENST00000435823 PNPLA6Q8IY17 1366 aa16.25■□□□□ 0.19
COL28A1-203ENST00000435823 PRR36Q9H6K5 1346 aa16.24■□□□□ 0.19
COL28A1-203ENST00000435823 XPCQ01831 940 aaPredicted RBP16.24■□□□□ 0.19
COL28A1-203ENST00000435823 PMFBP1Q8TBY8 1022 aa16.24■□□□□ 0.19
COL28A1-203ENST00000435823 SRPK2P78362 688 aaKnown RBP16.23■□□□□ 0.19
COL28A1-203ENST00000435823 PSME1Q06323 249 aa16.23■□□□□ 0.19
COL28A1-203ENST00000435823 KRT28Q7Z3Y7 464 aa16.23■□□□□ 0.19
COL28A1-203ENST00000435823 NUDT16Q96DE0 195 aaKnown RBP16.23■□□□□ 0.19
COL28A1-203ENST00000435823 ATP7BP35670 1465 aa16.22■□□□□ 0.19
COL28A1-203ENST00000435823 MEX3CQ5U5Q3 659 aaKnown RBP16.22■□□□□ 0.19
COL28A1-203ENST00000435823 EVC2Q86UK5 1308 aa16.21■□□□□ 0.19
COL28A1-203ENST00000435823 NUTM2BA6NNL0 878 aaPredicted RBP16.21■□□□□ 0.19
COL28A1-203ENST00000435823 NUTM2EB1AL46 878 aaPredicted RBP16.21■□□□□ 0.19
COL28A1-203ENST00000435823 NUTM2AQ8IVF1 878 aaPredicted RBP16.21■□□□□ 0.19
COL28A1-203ENST00000435823 NGDNQ8NEJ9 315 aaKnown RBP16.2■□□□□ 0.18
COL28A1-203ENST00000435823 CCDC61Q9Y6R9 512 aa16.2■□□□□ 0.18
COL28A1-203ENST00000435823 LRP6O75581 1613 aa16.19■□□□□ 0.18
COL28A1-203ENST00000435823 CABP2Q9NPB3 220 aa16.19■□□□□ 0.18
COL28A1-203ENST00000435823 SPATA31A3Q5VYP0 1347 aa16.19■□□□□ 0.18
COL28A1-203ENST00000435823 TOPAZ1Q8N9V7 1692 aa16.18■□□□□ 0.18
COL28A1-203ENST00000435823 SBNO1A3KN83 1393 aa16.18■□□□□ 0.18
COL28A1-203ENST00000435823 SBNO2Q9Y2G9 1366 aa16.18■□□□□ 0.18
COL28A1-203ENST00000435823 COL22A1Q8NFW1 1626 aaPredicted RBP16.18■□□□□ 0.18
COL28A1-203ENST00000435823 TNS3Q68CZ2 1445 aa16.18■□□□□ 0.18
COL28A1-203ENST00000435823 PPIP5K1Q6PFW1 1433 aa16.16■□□□□ 0.18
COL28A1-203ENST00000435823 ARHGEF10O15013 1369 aa16.15■□□□□ 0.18
COL28A1-203ENST00000435823 PLEKHG3A1L390 1219 aa16.15■□□□□ 0.18
COL28A1-203ENST00000435823 LMOD2Q6P5Q4 547 aa16.15■□□□□ 0.18
COL28A1-203ENST00000435823 SLC24A1O60721 1099 aa16.14■□□□□ 0.17
COL28A1-203ENST00000435823 ACEP12821 1306 aa16.14■□□□□ 0.17
COL28A1-203ENST00000435823 POLR3AO14802 1390 aaPredicted RBP16.13■□□□□ 0.17
COL28A1-203ENST00000435823 ST20-MTHFSA0A0A6YYL1 179 aa16.13■□□□□ 0.17
COL28A1-203ENST00000435823 PAK3O75914 559 aaPredicted RBP16.13■□□□□ 0.17
COL28A1-203ENST00000435823 ADAMTS2O95450 1211 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms