RNA–Protein interactions for RNA: ENST00000434274.2

LIMS1-209, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 3

Gene LIMS1, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-209ENST00000434274 STK26Q9P289 416 aa21.66■■□□□ 1.06
LIMS1-209ENST00000434274 FMN2Q9NZ56 1722 aa21.66■■□□□ 1.06
LIMS1-209ENST00000434274 KIF1AQ12756 1690 aa21.66■■□□□ 1.06
LIMS1-209ENST00000434274 NPHP3Q7Z494 1330 aa21.63■■□□□ 1.05
LIMS1-209ENST00000434274 ADGRB1O14514 1584 aa21.63■■□□□ 1.05
LIMS1-209ENST00000434274 MEX3CQ5U5Q3 659 aaKnown RBP21.63■■□□□ 1.05
LIMS1-209ENST00000434274 TMEM132EQ6IEE7 984 aa21.63■■□□□ 1.05
LIMS1-209ENST00000434274 EIF3AQ14152 1382 aaKnown RBP21.62■■□□□ 1.05
LIMS1-209ENST00000434274 ADGRB2O60241 1585 aa21.62■■□□□ 1.05
LIMS1-209ENST00000434274 CFAP70Q5T0N1 1121 aa21.62■■□□□ 1.05
LIMS1-209ENST00000434274 KIAA1210Q9ULL0 1709 aa21.62■■□□□ 1.05
LIMS1-209ENST00000434274 DCAF11Q8TEB1 546 aa21.61■■□□□ 1.05
LIMS1-209ENST00000434274 SOS2Q07890 1332 aaPredicted RBP21.6■■□□□ 1.05
LIMS1-209ENST00000434274 LRP6O75581 1613 aa21.6■■□□□ 1.05
LIMS1-209ENST00000434274 PNPLA6Q8IY17 1366 aa21.6■■□□□ 1.05
LIMS1-209ENST00000434274 ZNF772Q68DY9 489 aaPredicted RBP21.59■■□□□ 1.05
LIMS1-209ENST00000434274 WAPLQ7Z5K2 1190 aa21.58■■□□□ 1.05
LIMS1-209ENST00000434274 ANKARQ7Z5J8 1434 aa21.57■■□□□ 1.04
LIMS1-209ENST00000434274 COL22A1Q8NFW1 1626 aaPredicted RBP21.57■■□□□ 1.04
LIMS1-209ENST00000434274 PLEKHH1Q9ULM0 1364 aa21.57■■□□□ 1.04
LIMS1-209ENST00000434274 ESCO1Q5FWF5 840 aa21.56■■□□□ 1.04
LIMS1-209ENST00000434274 ORAI2Q96SN7 254 aa21.56■■□□□ 1.04
LIMS1-209ENST00000434274 POGKQ9P215 609 aa21.56■■□□□ 1.04
LIMS1-209ENST00000434274 RGS17Q9UGC6 210 aaPredicted RBP21.56■■□□□ 1.04
LIMS1-209ENST00000434274 PRAM1Q96QH2 718 aa21.54■■□□□ 1.04
LIMS1-209ENST00000434274 KDM2AQ9Y2K7 1162 aa21.54■■□□□ 1.04
LIMS1-209ENST00000434274 PXDNQ92626 1479 aa21.53■■□□□ 1.04
LIMS1-209ENST00000434274 ARHGEF28Q8N1W1 1705 aaKnown RBP21.51■■□□□ 1.03
LIMS1-209ENST00000434274 NUTM2BA6NNL0 878 aaPredicted RBP21.5■■□□□ 1.03
LIMS1-209ENST00000434274 NUTM2EB1AL46 878 aaPredicted RBP21.5■■□□□ 1.03
LIMS1-209ENST00000434274 NUTM2AQ8IVF1 878 aaPredicted RBP21.5■■□□□ 1.03
LIMS1-209ENST00000434274 DDX17Q92841 729 aaKnown RBP21.48■■□□□ 1.03
LIMS1-209ENST00000434274 TULP4Q9NRJ4 1543 aa21.48■■□□□ 1.03
LIMS1-209ENST00000434274 CDK12Q9NYV4 1490 aaPredicted RBP21.47■■□□□ 1.03
LIMS1-209ENST00000434274 ITSN1Q15811 1721 aa21.47■■□□□ 1.03
LIMS1-209ENST00000434274 POTEAQ6S8J7 498 aa21.47■■□□□ 1.03
LIMS1-209ENST00000434274 TRAK1Q9UPV9 953 aa21.47■■□□□ 1.03
LIMS1-209ENST00000434274 PSME1Q06323 249 aa21.46■■□□□ 1.03
LIMS1-209ENST00000434274 PHF8Q9UPP1 1060 aa21.46■■□□□ 1.03
LIMS1-209ENST00000434274 RGPD8O14715 1765 aaPredicted RBP21.46■■□□□ 1.03
LIMS1-209ENST00000434274 FOXO3O43524 673 aa21.45■■□□□ 1.02
LIMS1-209ENST00000434274 SAFB2Q14151 953 aaKnown RBP eCLIP21.44■■□□□ 1.02
LIMS1-209ENST00000434274 AFF2P51816 1311 aa21.44■■□□□ 1.02
LIMS1-209ENST00000434274 MARF1Q9Y4F3 1742 aaKnown RBP21.43■■□□□ 1.02
LIMS1-209ENST00000434274 SBNO1A3KN83 1393 aa21.43■■□□□ 1.02
LIMS1-209ENST00000434274 ARHGEF10O15013 1369 aa21.43■■□□□ 1.02
LIMS1-209ENST00000434274 NUTM2FA1L443 756 aa21.42■■□□□ 1.02
LIMS1-209ENST00000434274 TNS3Q68CZ2 1445 aa21.42■■□□□ 1.02
LIMS1-209ENST00000434274 USP32Q8NFA0 1604 aa21.42■■□□□ 1.02
LIMS1-209ENST00000434274 C8orf37Q96NL8 207 aa21.41■■□□□ 1.02
LIMS1-209ENST00000434274 SPATA31A3Q5VYP0 1347 aa21.4■■□□□ 1.02
LIMS1-209ENST00000434274 GPRASP1Q5JY77 1395 aa21.39■■□□□ 1.02
LIMS1-209ENST00000434274 MINK1Q8N4C8 1332 aaPredicted RBP21.39■■□□□ 1.01
LIMS1-209ENST00000434274 WASLO00401 505 aaPredicted RBP21.39■■□□□ 1.01
LIMS1-209ENST00000434274 RXRBP28702 533 aa21.39■■□□□ 1.01
LIMS1-209ENST00000434274 NGLY1Q96IV0 654 aa21.39■■□□□ 1.01
LIMS1-209ENST00000434274 KRT28Q7Z3Y7 464 aa21.38■■□□□ 1.01
LIMS1-209ENST00000434274 TRIM26Q12899 539 aaPredicted RBP21.37■■□□□ 1.01
LIMS1-209ENST00000434274 ADAMTS2O95450 1211 aa21.36■■□□□ 1.01
LIMS1-209ENST00000434274 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.35■■□□□ 1.01
LIMS1-209ENST00000434274 XPCQ01831 940 aaPredicted RBP21.35■■□□□ 1.01
LIMS1-209ENST00000434274 TRPM1Q7Z4N2 1603 aa21.35■■□□□ 1.01
LIMS1-209ENST00000434274 ATP7BP35670 1465 aa21.34■■□□□ 1.01
LIMS1-209ENST00000434274 RBM6P78332 1123 aaKnown RBP21.34■■□□□ 1.01
LIMS1-209ENST00000434274 FNBP4Q8N3X1 1017 aaPredicted RBP21.34■■□□□ 1.01
LIMS1-209ENST00000434274 HIRIP3Q9BW71 556 aaPredicted RBP21.34■■□□□ 1.01
LIMS1-209ENST00000434274 TRPM3Q9HCF6 1732 aaPredicted RBP21.33■■□□□ 1.01
LIMS1-209ENST00000434274 TOPAZ1Q8N9V7 1692 aa21.32■■□□□ 1
LIMS1-209ENST00000434274 L3MBTL2Q969R5 705 aa21.32■■□□□ 1
LIMS1-209ENST00000434274 TRPC5Q9UL62 973 aaPredicted RBP21.32■■□□□ 1
LIMS1-209ENST00000434274 ABCA3Q99758 1704 aa21.32■■□□□ 1
LIMS1-209ENST00000434274 CENPJQ9HC77 1338 aaPredicted RBP21.31■■□□□ 1
LIMS1-209ENST00000434274 QRICH2Q9H0J4 1663 aa21.31■■□□□ 1
LIMS1-209ENST00000434274 HAP1P54257 671 aaPredicted RBP21.31■■□□□ 1
LIMS1-209ENST00000434274 USP21Q9UK80 565 aa21.31■■□□□ 1
LIMS1-209ENST00000434274 QTRT2Q9H974 415 aaKnown RBP21.3■■□□□ 1
LIMS1-209ENST00000434274 ALS2Q96Q42 1657 aa21.3■■□□□ 1
LIMS1-209ENST00000434274 NGDNQ8NEJ9 315 aaKnown RBP21.29■■□□□ 1
LIMS1-209ENST00000434274 NWD2Q9ULI1 1742 aa21.29■■□□□ 1
LIMS1-209ENST00000434274 ATRNO75882 1429 aa21.29■■□□□ 1
LIMS1-209ENST00000434274 PRR36Q9H6K5 1346 aa21.29■■□□□ 1
LIMS1-209ENST00000434274 ROCK2O75116 1388 aaKnown RBP21.28■■□□□ 1
LIMS1-209ENST00000434274 NBPF1Q3BBV0 1214 aa21.27■■□□□ 1
LIMS1-209ENST00000434274 PMFBP1Q8TBY8 1022 aa21.27■■□□□ 1
LIMS1-209ENST00000434274 NUDT16Q96DE0 195 aaKnown RBP21.27■■□□□ 1
LIMS1-209ENST00000434274 TONSLQ96HA7 1378 aa21.26■□□□□ 0.99
LIMS1-209ENST00000434274 NEUROD1Q13562 356 aa21.26■□□□□ 0.99
LIMS1-209ENST00000434274 CCDC61Q9Y6R9 512 aa21.26■□□□□ 0.99
LIMS1-209ENST00000434274 POLR3AO14802 1390 aaPredicted RBP21.25■□□□□ 0.99
LIMS1-209ENST00000434274 BRD4O60885 1362 aaPredicted RBP21.25■□□□□ 0.99
LIMS1-209ENST00000434274 SLIT2O94813 1529 aa21.25■□□□□ 0.99
LIMS1-209ENST00000434274 CDK19Q9BWU1 502 aa21.25■□□□□ 0.99
LIMS1-209ENST00000434274 RGS12O14924 1447 aa21.24■□□□□ 0.99
LIMS1-209ENST00000434274 LMOD2Q6P5Q4 547 aa21.24■□□□□ 0.99
LIMS1-209ENST00000434274 SIN3AQ96ST3 1273 aa21.24■□□□□ 0.99
LIMS1-209ENST00000434274 BCL9LQ86UU0 1499 aa21.24■□□□□ 0.99
LIMS1-209ENST00000434274 PLCH1Q4KWH8 1693 aa21.22■□□□□ 0.99
LIMS1-209ENST00000434274 PLEKHG3A1L390 1219 aa21.21■□□□□ 0.99
LIMS1-209ENST00000434274 SRPK2P78362 688 aaKnown RBP21.21■□□□□ 0.99
LIMS1-209ENST00000434274 UNC5CLQ8IV45 518 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms