RNA–Protein interactions for RNA: ENST00000428678.1

UPK3BP1-201, Transcript of uroplakin 3B pseudogene 1, humanhuman

BASIC

Gene UPK3BP1, Length 509 nt, Biotype transcribed unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3BP1-201ENST00000428678 COL22A1Q8NFW1 1626 aaPredicted RBP27.56■■■□□ 2
UPK3BP1-201ENST00000428678 ESCO1Q5FWF5 840 aa27.55■■■□□ 2
UPK3BP1-201ENST00000428678 ATAD2Q6PL18 1390 aa27.55■■■□□ 2
UPK3BP1-201ENST00000428678 CDC42BPGQ6DT37 1551 aa27.55■■■□□ 2
UPK3BP1-201ENST00000428678 NPHP3Q7Z494 1330 aa27.54■■■□□ 2
UPK3BP1-201ENST00000428678 FNBP4Q8N3X1 1017 aaPredicted RBP27.53■■■□□ 2
UPK3BP1-201ENST00000428678 FOXD1Q16676 465 aa27.52■■■□□ 2
UPK3BP1-201ENST00000428678 MYOM2P54296 1465 aa27.51■■□□□ 1.99
UPK3BP1-201ENST00000428678 ATRNO75882 1429 aa27.5■■□□□ 1.99
UPK3BP1-201ENST00000428678 EP400Q96L91 3159 aa27.5■■□□□ 1.99
UPK3BP1-201ENST00000428678 ADGRF5Q8IZF2 1346 aa27.49■■□□□ 1.99
UPK3BP1-201ENST00000428678 XPCQ01831 940 aaPredicted RBP27.49■■□□□ 1.99
UPK3BP1-201ENST00000428678 STK26Q9P289 416 aa27.49■■□□□ 1.99
UPK3BP1-201ENST00000428678 PXDNQ92626 1479 aa27.49■■□□□ 1.99
UPK3BP1-201ENST00000428678 FOXO3O43524 673 aa27.48■■□□□ 1.99
UPK3BP1-201ENST00000428678 NUTM2FA1L443 756 aa27.47■■□□□ 1.99
UPK3BP1-201ENST00000428678 CCDC144AA2RUR9 1427 aa27.47■■□□□ 1.99
UPK3BP1-201ENST00000428678 RGL3Q3MIN7 710 aa27.46■■□□□ 1.99
UPK3BP1-201ENST00000428678 MARF1Q9Y4F3 1742 aaKnown RBP27.45■■□□□ 1.99
UPK3BP1-201ENST00000428678 WAPLQ7Z5K2 1190 aa27.45■■□□□ 1.98
UPK3BP1-201ENST00000428678 LRPPRCP42704 1394 aaKnown RBP27.44■■□□□ 1.98
UPK3BP1-201ENST00000428678 TECPR2O15040 1411 aa27.43■■□□□ 1.98
UPK3BP1-201ENST00000428678 BCL9LQ86UU0 1499 aa27.42■■□□□ 1.98
UPK3BP1-201ENST00000428678 ANKRD30BQ9BXX2 1392 aa27.41■■□□□ 1.98
UPK3BP1-201ENST00000428678 SPATA31E1Q6ZUB1 1445 aa27.41■■□□□ 1.98
UPK3BP1-201ENST00000428678 TMEM132EQ6IEE7 984 aa27.4■■□□□ 1.98
UPK3BP1-201ENST00000428678 IFT172Q9UG01 1749 aa27.4■■□□□ 1.98
UPK3BP1-201ENST00000428678 PLEKHH1Q9ULM0 1364 aa27.39■■□□□ 1.98
UPK3BP1-201ENST00000428678 KNDC1Q76NI1 1749 aa27.38■■□□□ 1.97
UPK3BP1-201ENST00000428678 ABCC11Q96J66 1382 aa27.38■■□□□ 1.97
UPK3BP1-201ENST00000428678 FMN2Q9NZ56 1722 aa27.36■■□□□ 1.97
UPK3BP1-201ENST00000428678 GJD4Q96KN9 370 aaPredicted RBP27.36■■□□□ 1.97
UPK3BP1-201ENST00000428678 PIK3C2GO75747 1445 aa27.34■■□□□ 1.97
UPK3BP1-201ENST00000428678 KIF1AQ12756 1690 aa27.34■■□□□ 1.97
UPK3BP1-201ENST00000428678 MPHOSPH9Q99550 1183 aa27.34■■□□□ 1.97
UPK3BP1-201ENST00000428678 ZRANB1Q9UGI0 708 aa27.34■■□□□ 1.97
UPK3BP1-201ENST00000428678 YTHDC2Q9H6S0 1430 aaKnown RBP27.33■■□□□ 1.97
UPK3BP1-201ENST00000428678 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.33■■□□□ 1.97
UPK3BP1-201ENST00000428678 SPATA31A3Q5VYP0 1347 aa27.33■■□□□ 1.97
UPK3BP1-201ENST00000428678 CCDC125Q86Z20 511 aa27.31■■□□□ 1.96
UPK3BP1-201ENST00000428678 KRT28Q7Z3Y7 464 aa27.3■■□□□ 1.96
UPK3BP1-201ENST00000428678 UNC5CLQ8IV45 518 aa27.3■■□□□ 1.96
UPK3BP1-201ENST00000428678 SLIT2O94813 1529 aa27.28■■□□□ 1.96
UPK3BP1-201ENST00000428678 RALGAPBQ86X10 1494 aa27.28■■□□□ 1.96
UPK3BP1-201ENST00000428678 USP32Q8NFA0 1604 aa27.27■■□□□ 1.96
UPK3BP1-201ENST00000428678 GLI3P10071 1580 aa27.27■■□□□ 1.96
UPK3BP1-201ENST00000428678 HAP1P54257 671 aaPredicted RBP27.27■■□□□ 1.96
UPK3BP1-201ENST00000428678 RGPD8O14715 1765 aaPredicted RBP27.26■■□□□ 1.95
UPK3BP1-201ENST00000428678 PLEKHG5O94827 1062 aa27.24■■□□□ 1.95
UPK3BP1-201ENST00000428678 PHF8Q9UPP1 1060 aa27.24■■□□□ 1.95
UPK3BP1-201ENST00000428678 TNS3Q68CZ2 1445 aa27.24■■□□□ 1.95
UPK3BP1-201ENST00000428678 SIRT1Q96EB6 747 aa27.23■■□□□ 1.95
UPK3BP1-201ENST00000428678 PSME1Q06323 249 aa27.22■■□□□ 1.95
UPK3BP1-201ENST00000428678 C14orf93Q9H972 538 aaKnown RBP27.22■■□□□ 1.95
UPK3BP1-201ENST00000428678 DHX57Q6P158 1386 aaKnown RBP27.22■■□□□ 1.95
UPK3BP1-201ENST00000428678 CABLES1Q8TDN4 633 aa27.21■■□□□ 1.95
UPK3BP1-201ENST00000428678 BRWD3Q6RI45 1802 aa27.2■■□□□ 1.95
UPK3BP1-201ENST00000428678 BLMP54132 1417 aaPredicted RBP27.2■■□□□ 1.94
UPK3BP1-201ENST00000428678 SAFB2Q14151 953 aaKnown RBP eCLIP27.2■■□□□ 1.94
UPK3BP1-201ENST00000428678 CFAP70Q5T0N1 1121 aa27.2■■□□□ 1.94
UPK3BP1-201ENST00000428678 LMOD2Q6P5Q4 547 aa27.2■■□□□ 1.94
UPK3BP1-201ENST00000428678 PRAM1Q96QH2 718 aa27.18■■□□□ 1.94
UPK3BP1-201ENST00000428678 NRXN1Q9ULB1 1477 aa27.18■■□□□ 1.94
UPK3BP1-201ENST00000428678 PLCH1Q4KWH8 1693 aa27.17■■□□□ 1.94
UPK3BP1-201ENST00000428678 CCDC9Q9Y3X0 531 aaKnown RBP27.17■■□□□ 1.94
UPK3BP1-201ENST00000428678 VPS72Q15906 364 aa27.16■■□□□ 1.94
UPK3BP1-201ENST00000428678 SEPT12Q8IYM1 358 aa27.16■■□□□ 1.94
UPK3BP1-201ENST00000428678 SBNO1A3KN83 1393 aa27.16■■□□□ 1.94
UPK3BP1-201ENST00000428678 ARHGEF10O15013 1369 aa27.15■■□□□ 1.94
UPK3BP1-201ENST00000428678 ABCA3Q99758 1704 aa27.15■■□□□ 1.94
UPK3BP1-201ENST00000428678 NWD2Q9ULI1 1742 aa27.15■■□□□ 1.94
UPK3BP1-201ENST00000428678 SF3B2Q13435 895 aaKnown RBP27.13■■□□□ 1.93
UPK3BP1-201ENST00000428678 DEFB132Q7Z7B7 95 aa27.13■■□□□ 1.93
UPK3BP1-201ENST00000428678 POGKQ9P215 609 aa27.13■■□□□ 1.93
UPK3BP1-201ENST00000428678 PMFBP1Q8TBY8 1022 aa27.12■■□□□ 1.93
UPK3BP1-201ENST00000428678 ACIN1Q9UKV3 1341 aaKnown RBP27.1■■□□□ 1.93
UPK3BP1-201ENST00000428678 ANKARQ7Z5J8 1434 aa27.09■■□□□ 1.93
UPK3BP1-201ENST00000428678 DLC1Q96QB1 1528 aa27.09■■□□□ 1.93
UPK3BP1-201ENST00000428678 KRT27Q7Z3Y8 459 aa27.08■■□□□ 1.93
UPK3BP1-201ENST00000428678 A0A0G2JS52 829 aa27.07■■□□□ 1.92
UPK3BP1-201ENST00000428678 FAM83GA6ND36 823 aa27.07■■□□□ 1.92
UPK3BP1-201ENST00000428678 MYT1Q01538 1121 aa27.07■■□□□ 1.92
UPK3BP1-201ENST00000428678 ONECUT3O60422 494 aaPredicted RBP27.06■■□□□ 1.92
UPK3BP1-201ENST00000428678 ADGRB2O60241 1585 aa27.05■■□□□ 1.92
UPK3BP1-201ENST00000428678 HIRIP3Q9BW71 556 aaPredicted RBP27.05■■□□□ 1.92
UPK3BP1-201ENST00000428678 TRPM3Q9HCF6 1732 aaPredicted RBP27.03■■□□□ 1.92
UPK3BP1-201ENST00000428678 TRAK1Q9UPV9 953 aa27.03■■□□□ 1.92
UPK3BP1-201ENST00000428678 ADGRB1O14514 1584 aa27.02■■□□□ 1.92
UPK3BP1-201ENST00000428678 GPRASP1Q5JY77 1395 aa27.02■■□□□ 1.92
UPK3BP1-201ENST00000428678 MINK1Q8N4C8 1332 aaPredicted RBP27.02■■□□□ 1.92
UPK3BP1-201ENST00000428678 BTG4Q9NY30 223 aa27.01■■□□□ 1.91
UPK3BP1-201ENST00000428678 NRAPQ86VF7 1730 aa27.01■■□□□ 1.91
UPK3BP1-201ENST00000428678 FAM98CQ17RN3 349 aaKnown RBP27■■□□□ 1.91
UPK3BP1-201ENST00000428678 EIF3AQ14152 1382 aaKnown RBP26.99■■□□□ 1.91
UPK3BP1-201ENST00000428678 ALS2Q96Q42 1657 aa26.99■■□□□ 1.91
UPK3BP1-201ENST00000428678 COL14A1Q05707 1796 aaKnown RBP26.97■■□□□ 1.91
UPK3BP1-201ENST00000428678 PRR36Q9H6K5 1346 aa26.97■■□□□ 1.91
UPK3BP1-201ENST00000428678 TULP4Q9NRJ4 1543 aa26.97■■□□□ 1.91
UPK3BP1-201ENST00000428678 KDM2AQ9Y2K7 1162 aa26.97■■□□□ 1.91
UPK3BP1-201ENST00000428678 RAB3GAP2Q9H2M9 1393 aa26.97■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms