RNA–Protein interactions for RNA: ENST00000428404.5

TRIM39-207, Transcript of tripartite motif containing 39, humanhuman

TSL 2

Gene TRIM39, Length 427 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-207ENST00000428404 PUS7Q96PZ0 661 aaKnown RBP17.42■□□□□ 0.38
TRIM39-207ENST00000428404 NWD1Q149M9 1564 aa17.41■□□□□ 0.38
TRIM39-207ENST00000428404 CDCA8Q53HL2 280 aa17.41■□□□□ 0.38
TRIM39-207ENST00000428404 EVC2Q86UK5 1308 aa17.4■□□□□ 0.38
TRIM39-207ENST00000428404 MINK1Q8N4C8 1332 aaPredicted RBP17.4■□□□□ 0.38
TRIM39-207ENST00000428404 TULP4Q9NRJ4 1543 aa17.38■□□□□ 0.37
TRIM39-207ENST00000428404 AEBP2Q6ZN18 517 aaPredicted RBP17.38■□□□□ 0.37
TRIM39-207ENST00000428404 DDX10Q13206 875 aaKnown RBP17.37■□□□□ 0.37
TRIM39-207ENST00000428404 NKTRP30414 1462 aaKnown RBP17.37■□□□□ 0.37
TRIM39-207ENST00000428404 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.36■□□□□ 0.37
TRIM39-207ENST00000428404 WASLO00401 505 aaPredicted RBP17.36■□□□□ 0.37
TRIM39-207ENST00000428404 CDK19Q9BWU1 502 aa17.36■□□□□ 0.37
TRIM39-207ENST00000428404 ADGRB2O60241 1585 aa17.34■□□□□ 0.37
TRIM39-207ENST00000428404 STRCP1A6NGW2 1772 aa17.33■□□□□ 0.37
TRIM39-207ENST00000428404 PROSER2Q86WR7 435 aaPredicted RBP17.33■□□□□ 0.36
TRIM39-207ENST00000428404 CABP2Q9NPB3 220 aa17.33■□□□□ 0.36
TRIM39-207ENST00000428404 NCOA3Q9Y6Q9 1424 aa17.32■□□□□ 0.36
TRIM39-207ENST00000428404 ZNF335Q9H4Z2 1342 aaPredicted RBP17.32■□□□□ 0.36
TRIM39-207ENST00000428404 POLR3GLQ9BT43 218 aa17.32■□□□□ 0.36
TRIM39-207ENST00000428404 ADGRL3Q9HAR2 1447 aa17.3■□□□□ 0.36
TRIM39-207ENST00000428404 SRPK2P78362 688 aaKnown RBP17.3■□□□□ 0.36
TRIM39-207ENST00000428404 DIEXFQ68CQ4 756 aaKnown RBP17.3■□□□□ 0.36
TRIM39-207ENST00000428404 RBM33Q96EV2 1170 aaKnown RBP17.3■□□□□ 0.36
TRIM39-207ENST00000428404 ATAD2Q6PL18 1390 aa17.29■□□□□ 0.36
TRIM39-207ENST00000428404 TMEM94Q12767 1356 aa17.28■□□□□ 0.36
TRIM39-207ENST00000428404 NUDT16Q96DE0 195 aaKnown RBP17.27■□□□□ 0.36
TRIM39-207ENST00000428404 SLC12A5Q9H2X9 1139 aa17.27■□□□□ 0.36
TRIM39-207ENST00000428404 C19orf44Q9H6X5 657 aa17.27■□□□□ 0.36
TRIM39-207ENST00000428404 NINLQ9Y2I6 1382 aa17.27■□□□□ 0.35
TRIM39-207ENST00000428404 LRRC7Q96NW7 1537 aa17.26■□□□□ 0.35
TRIM39-207ENST00000428404 PRR36Q9H6K5 1346 aa17.26■□□□□ 0.35
TRIM39-207ENST00000428404 PANK3Q9H999 370 aa17.26■□□□□ 0.35
TRIM39-207ENST00000428404 CDC42BPGQ6DT37 1551 aa17.25■□□□□ 0.35
TRIM39-207ENST00000428404 PER1O15534 1290 aaPredicted RBP17.25■□□□□ 0.35
TRIM39-207ENST00000428404 CCDC61Q9Y6R9 512 aa17.25■□□□□ 0.35
TRIM39-207ENST00000428404 ATP7BP35670 1465 aa17.24■□□□□ 0.35
TRIM39-207ENST00000428404 NALCNQ8IZF0 1738 aa17.24■□□□□ 0.35
TRIM39-207ENST00000428404 MYOM1P52179 1685 aa17.24■□□□□ 0.35
TRIM39-207ENST00000428404 ANKARQ7Z5J8 1434 aa17.23■□□□□ 0.35
TRIM39-207ENST00000428404 C14orf37Q86TY3 774 aa17.23■□□□□ 0.35
TRIM39-207ENST00000428404 TMC1Q8TDI8 760 aa17.23■□□□□ 0.35
TRIM39-207ENST00000428404 CABP1Q9NZU7 370 aa17.23■□□□□ 0.35
TRIM39-207ENST00000428404 PLEKHG3A1L390 1219 aa17.22■□□□□ 0.35
TRIM39-207ENST00000428404 DCCP43146 1447 aa17.21■□□□□ 0.35
TRIM39-207ENST00000428404 CARD14Q9BXL6 1004 aa17.21■□□□□ 0.35
TRIM39-207ENST00000428404 LTBP4Q8N2S1 1624 aa17.21■□□□□ 0.35
TRIM39-207ENST00000428404 CD163L1Q9NR16 1453 aa17.2■□□□□ 0.34
TRIM39-207ENST00000428404 ANKRD36BQ8N2N9 1353 aa17.2■□□□□ 0.34
TRIM39-207ENST00000428404 FMN2Q9NZ56 1722 aa17.2■□□□□ 0.34
TRIM39-207ENST00000428404 USP32Q8NFA0 1604 aa17.2■□□□□ 0.34
TRIM39-207ENST00000428404 PPIP5K1Q6PFW1 1433 aa17.2■□□□□ 0.34
TRIM39-207ENST00000428404 XIRP1Q702N8 1843 aaKnown RBP17.19■□□□□ 0.34
TRIM39-207ENST00000428404 NUTM2FA1L443 756 aa17.18■□□□□ 0.34
TRIM39-207ENST00000428404 TERF2IPQ9NYB0 399 aa17.18■□□□□ 0.34
TRIM39-207ENST00000428404 CPSF1Q10570 1443 aaKnown RBP17.18■□□□□ 0.34
TRIM39-207ENST00000428404 A0A1W2PP64 1363 aa17.17■□□□□ 0.34
TRIM39-207ENST00000428404 MSH6P52701 1360 aa17.17■□□□□ 0.34
TRIM39-207ENST00000428404 ATF3P18847 181 aa17.17■□□□□ 0.34
TRIM39-207ENST00000428404 CADPS2Q86UW7 1296 aa17.17■□□□□ 0.34
TRIM39-207ENST00000428404 TOPAZ1Q8N9V7 1692 aa17.16■□□□□ 0.34
TRIM39-207ENST00000428404 AMER1Q5JTC6 1135 aaPredicted RBP17.15■□□□□ 0.34
TRIM39-207ENST00000428404 HDGFL2Q7Z4V5 671 aaPredicted RBP17.15■□□□□ 0.34
TRIM39-207ENST00000428404 KNSTRNQ9Y448 316 aa17.15■□□□□ 0.34
TRIM39-207ENST00000428404 POLR3AO14802 1390 aaPredicted RBP17.15■□□□□ 0.34
TRIM39-207ENST00000428404 MST1RQ04912 1400 aa17.14■□□□□ 0.33
TRIM39-207ENST00000428404 C1orf167Q5SNV9 1468 aa17.14■□□□□ 0.33
TRIM39-207ENST00000428404 ZNF692Q9BU19 519 aaPredicted RBP17.14■□□□□ 0.33
TRIM39-207ENST00000428404 ACEP12821 1306 aa17.14■□□□□ 0.33
TRIM39-207ENST00000428404 NPC1L1Q9UHC9 1359 aa17.14■□□□□ 0.33
TRIM39-207ENST00000428404 PHF8Q9UPP1 1060 aa17.12■□□□□ 0.33
TRIM39-207ENST00000428404 NSD3Q9BZ95 1437 aa17.12■□□□□ 0.33
TRIM39-207ENST00000428404 RGPD8O14715 1765 aaPredicted RBP17.11■□□□□ 0.33
TRIM39-207ENST00000428404 ESCO1Q5FWF5 840 aa17.11■□□□□ 0.33
TRIM39-207ENST00000428404 MIER1Q8N108 512 aa17.11■□□□□ 0.33
TRIM39-207ENST00000428404 PMFBP1Q8TBY8 1022 aa17.11■□□□□ 0.33
TRIM39-207ENST00000428404 ORAI2Q96SN7 254 aa17.11■□□□□ 0.33
TRIM39-207ENST00000428404 ITSN1Q15811 1721 aa17.1■□□□□ 0.33
TRIM39-207ENST00000428404 ANP32CO43423 234 aa17.1■□□□□ 0.33
TRIM39-207ENST00000428404 PRKRIP1Q9H875 184 aaPredicted RBP17.1■□□□□ 0.33
TRIM39-207ENST00000428404 KTN1Q86UP2 1357 aaKnown RBP17.1■□□□□ 0.33
TRIM39-207ENST00000428404 NGDNQ8NEJ9 315 aaKnown RBP17.09■□□□□ 0.33
TRIM39-207ENST00000428404 SLAIN2Q9P270 581 aa17.09■□□□□ 0.33
TRIM39-207ENST00000428404 CGNL1Q0VF96 1302 aa17.09■□□□□ 0.33
TRIM39-207ENST00000428404 EDC4Q6P2E9 1401 aaKnown RBP17.09■□□□□ 0.33
TRIM39-207ENST00000428404 SSH2Q76I76 1423 aa17.09■□□□□ 0.33
TRIM39-207ENST00000428404 USP6P35125 1406 aa17.08■□□□□ 0.32
TRIM39-207ENST00000428404 AKAP12Q02952 1782 aa17.07■□□□□ 0.32
TRIM39-207ENST00000428404 PARD3Q8TEW0 1356 aa17.06■□□□□ 0.32
TRIM39-207ENST00000428404 FYB1O15117 783 aa17.06■□□□□ 0.32
TRIM39-207ENST00000428404 RALBP1Q15311 655 aa17.06■□□□□ 0.32
TRIM39-207ENST00000428404 CC2D1BQ5T0F9 858 aaKnown RBP17.06■□□□□ 0.32
TRIM39-207ENST00000428404 BRD4O60885 1362 aaPredicted RBP17.05■□□□□ 0.32
TRIM39-207ENST00000428404 NSD2O96028 1365 aa17.05■□□□□ 0.32
TRIM39-207ENST00000428404 MON2Q7Z3U7 1717 aa17.05■□□□□ 0.32
TRIM39-207ENST00000428404 TTC21BQ7Z4L5 1316 aa17.05■□□□□ 0.32
TRIM39-207ENST00000428404 BRINP3Q76B58 766 aa17.04■□□□□ 0.32
TRIM39-207ENST00000428404 FOXO3O43524 673 aa17.03■□□□□ 0.32
TRIM39-207ENST00000428404 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.03■□□□□ 0.32
TRIM39-207ENST00000428404 TTC21AQ8NDW8 1320 aa17.02■□□□□ 0.32
TRIM39-207ENST00000428404 KIF1AQ12756 1690 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms