RNA–Protein interactions for RNA: ENST00000428014.1

SMC1A-203, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 3

Gene SMC1A, Length 868 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-203ENST00000428014 ASXL1Q8IXJ9 1541 aa13.31□□□□□ -0.28
SMC1A-203ENST00000428014 HSPA1LP34931 641 aa13.31□□□□□ -0.28
SMC1A-203ENST00000428014 MST1RQ04912 1400 aa13.3□□□□□ -0.28
SMC1A-203ENST00000428014 ADGRB1O14514 1584 aa13.3□□□□□ -0.28
SMC1A-203ENST00000428014 PIP4K2BP78356 416 aa13.3□□□□□ -0.28
SMC1A-203ENST00000428014 RNF39Q9H2S5 420 aa13.3□□□□□ -0.28
SMC1A-203ENST00000428014 NALCNQ8IZF0 1738 aa13.28□□□□□ -0.28
SMC1A-203ENST00000428014 C14orf37Q86TY3 774 aa13.28□□□□□ -0.28
SMC1A-203ENST00000428014 DCAF11Q8TEB1 546 aa13.26□□□□□ -0.29
SMC1A-203ENST00000428014 ADGRB2O60241 1585 aa13.25□□□□□ -0.29
SMC1A-203ENST00000428014 C1orf167Q5SNV9 1468 aa13.25□□□□□ -0.29
SMC1A-203ENST00000428014 JCADQ9P266 1359 aa13.25□□□□□ -0.29
SMC1A-203ENST00000428014 BRINP3Q76B58 766 aa13.25□□□□□ -0.29
SMC1A-203ENST00000428014 COL16A1Q07092 1604 aaPredicted RBP13.24□□□□□ -0.29
SMC1A-203ENST00000428014 NHSL1Q5SYE7 1610 aa13.24□□□□□ -0.29
SMC1A-203ENST00000428014 EIF3AQ14152 1382 aaKnown RBP13.24□□□□□ -0.29
SMC1A-203ENST00000428014 CLSPNQ9HAW4 1339 aa13.24□□□□□ -0.29
SMC1A-203ENST00000428014 CFAP70Q5T0N1 1121 aa13.24□□□□□ -0.29
SMC1A-203ENST00000428014 SPATA31A6Q5VVP1 1343 aa13.23□□□□□ -0.29
SMC1A-203ENST00000428014 SAMD1Q6SPF0 538 aaPredicted RBP13.22□□□□□ -0.29
SMC1A-203ENST00000428014 RBM33Q96EV2 1170 aaKnown RBP13.22□□□□□ -0.29
SMC1A-203ENST00000428014 PHLPP1O60346 1717 aa13.22□□□□□ -0.29
SMC1A-203ENST00000428014 ANKARQ7Z5J8 1434 aa13.22□□□□□ -0.29
SMC1A-203ENST00000428014 SHPRHQ149N8 1683 aa13.21□□□□□ -0.3
SMC1A-203ENST00000428014 MED1Q15648 1581 aaPredicted RBP13.2□□□□□ -0.3
SMC1A-203ENST00000428014 SOS2Q07890 1332 aaPredicted RBP13.2□□□□□ -0.3
SMC1A-203ENST00000428014 TMEM132EQ6IEE7 984 aa13.2□□□□□ -0.3
SMC1A-203ENST00000428014 LRRC59Q96AG4 307 aaKnown RBP13.2□□□□□ -0.3
SMC1A-203ENST00000428014 TIMELESSQ9UNS1 1208 aa13.2□□□□□ -0.3
SMC1A-203ENST00000428014 FMN2Q9NZ56 1722 aa13.19□□□□□ -0.3
SMC1A-203ENST00000428014 KIF1AQ12756 1690 aa13.18□□□□□ -0.3
SMC1A-203ENST00000428014 NPHP3Q7Z494 1330 aa13.18□□□□□ -0.3
SMC1A-203ENST00000428014 ATXN8OSP0DMR3 200 aa13.18□□□□□ -0.3
SMC1A-203ENST00000428014 GPRASP1Q5JY77 1395 aa13.17□□□□□ -0.3
SMC1A-203ENST00000428014 WAPLQ7Z5K2 1190 aa13.16□□□□□ -0.3
SMC1A-203ENST00000428014 L3MBTL2Q969R5 705 aa13.16□□□□□ -0.3
SMC1A-203ENST00000428014 DISP3Q9P2K9 1392 aa13.16□□□□□ -0.3
SMC1A-203ENST00000428014 PLEKHH1Q9ULM0 1364 aa13.16□□□□□ -0.3
SMC1A-203ENST00000428014 PRAM1Q96QH2 718 aa13.15□□□□□ -0.3
SMC1A-203ENST00000428014 STK26Q9P289 416 aa13.15□□□□□ -0.3
SMC1A-203ENST00000428014 KDM2AQ9Y2K7 1162 aa13.15□□□□□ -0.3
SMC1A-203ENST00000428014 ARHGEF28Q8N1W1 1705 aaKnown RBP13.15□□□□□ -0.3
SMC1A-203ENST00000428014 POGKQ9P215 609 aa13.14□□□□□ -0.31
SMC1A-203ENST00000428014 SBNO2Q9Y2G9 1366 aa13.14□□□□□ -0.31
SMC1A-203ENST00000428014 TULP4Q9NRJ4 1543 aa13.13□□□□□ -0.31
SMC1A-203ENST00000428014 C1QBPQ07021 282 aaKnown RBP13.13□□□□□ -0.31
SMC1A-203ENST00000428014 COL22A1Q8NFW1 1626 aaPredicted RBP13.13□□□□□ -0.31
SMC1A-203ENST00000428014 PXDNQ92626 1479 aa13.12□□□□□ -0.31
SMC1A-203ENST00000428014 SLC24A1O60721 1099 aa13.12□□□□□ -0.31
SMC1A-203ENST00000428014 TRPM1Q7Z4N2 1603 aa13.12□□□□□ -0.31
SMC1A-203ENST00000428014 SBNO1A3KN83 1393 aa13.11□□□□□ -0.31
SMC1A-203ENST00000428014 BRD4O60885 1362 aaPredicted RBP13.11□□□□□ -0.31
SMC1A-203ENST00000428014 PNPLA6Q8IY17 1366 aa13.11□□□□□ -0.31
SMC1A-203ENST00000428014 WASLO00401 505 aaPredicted RBP13.11□□□□□ -0.31
SMC1A-203ENST00000428014 ORAI2Q96SN7 254 aa13.11□□□□□ -0.31
SMC1A-203ENST00000428014 TRAK1Q9UPV9 953 aa13.11□□□□□ -0.31
SMC1A-203ENST00000428014 ATF5Q9Y2D1 282 aaPredicted RBP13.11□□□□□ -0.31
SMC1A-203ENST00000428014 ESCO1Q5FWF5 840 aa13.1□□□□□ -0.31
SMC1A-203ENST00000428014 TONSLQ96HA7 1378 aa13.09□□□□□ -0.31
SMC1A-203ENST00000428014 SIN3AQ96ST3 1273 aa13.09□□□□□ -0.31
SMC1A-203ENST00000428014 RALGAPBQ86X10 1494 aa13.09□□□□□ -0.31
SMC1A-203ENST00000428014 ITSN1Q15811 1721 aa13.08□□□□□ -0.32
SMC1A-203ENST00000428014 PSME1Q06323 249 aa13.08□□□□□ -0.32
SMC1A-203ENST00000428014 PUS7Q96PZ0 661 aaKnown RBP13.08□□□□□ -0.32
SMC1A-203ENST00000428014 PHF8Q9UPP1 1060 aa13.08□□□□□ -0.32
SMC1A-203ENST00000428014 CENPJQ9HC77 1338 aaPredicted RBP13.08□□□□□ -0.32
SMC1A-203ENST00000428014 USP32Q8NFA0 1604 aa13.07□□□□□ -0.32
SMC1A-203ENST00000428014 NBPF1Q3BBV0 1214 aa13.07□□□□□ -0.32
SMC1A-203ENST00000428014 ATP7BP35670 1465 aa13.07□□□□□ -0.32
SMC1A-203ENST00000428014 ARHGEF10O15013 1369 aa13.07□□□□□ -0.32
SMC1A-203ENST00000428014 ZNF772Q68DY9 489 aaPredicted RBP13.06□□□□□ -0.32
SMC1A-203ENST00000428014 CCDC61Q9Y6R9 512 aa13.06□□□□□ -0.32
SMC1A-203ENST00000428014 SPATA31A3Q5VYP0 1347 aa13.06□□□□□ -0.32
SMC1A-203ENST00000428014 POLR3AO14802 1390 aaPredicted RBP13.06□□□□□ -0.32
SMC1A-203ENST00000428014 ROCK2O75116 1388 aaKnown RBP13.06□□□□□ -0.32
SMC1A-203ENST00000428014 PLEKHG3A1L390 1219 aa13.05□□□□□ -0.32
SMC1A-203ENST00000428014 FOXO3O43524 673 aa13.05□□□□□ -0.32
SMC1A-203ENST00000428014 LRP6O75581 1613 aa13.05□□□□□ -0.32
SMC1A-203ENST00000428014 TNS3Q68CZ2 1445 aa13.05□□□□□ -0.32
SMC1A-203ENST00000428014 TOPAZ1Q8N9V7 1692 aa13.03□□□□□ -0.32
SMC1A-203ENST00000428014 NEUROD1Q13562 356 aa13.03□□□□□ -0.32
SMC1A-203ENST00000428014 SPINK5Q9NQ38 1064 aaPredicted RBP13.03□□□□□ -0.32
SMC1A-203ENST00000428014 RGS17Q9UGC6 210 aaPredicted RBP13.03□□□□□ -0.32
SMC1A-203ENST00000428014 CDK12Q9NYV4 1490 aaPredicted RBP13.03□□□□□ -0.32
SMC1A-203ENST00000428014 KRT28Q7Z3Y7 464 aa13.02□□□□□ -0.33
SMC1A-203ENST00000428014 MINK1Q8N4C8 1332 aaPredicted RBP13.02□□□□□ -0.33
SMC1A-203ENST00000428014 PRR36Q9H6K5 1346 aa13.02□□□□□ -0.33
SMC1A-203ENST00000428014 RGPD8O14715 1765 aaPredicted RBP13.02□□□□□ -0.33
SMC1A-203ENST00000428014 SOCS7O14512 581 aa13.01□□□□□ -0.33
SMC1A-203ENST00000428014 NBPF8Q3BBV2 869 aa13.01□□□□□ -0.33
SMC1A-203ENST00000428014 FNBP4Q8N3X1 1017 aaPredicted RBP13.01□□□□□ -0.33
SMC1A-203ENST00000428014 NUDT16Q96DE0 195 aaKnown RBP13.01□□□□□ -0.33
SMC1A-203ENST00000428014 CDK19Q9BWU1 502 aa13.01□□□□□ -0.33
SMC1A-203ENST00000428014 EVC2Q86UK5 1308 aa13.01□□□□□ -0.33
SMC1A-203ENST00000428014 TRPM3Q9HCF6 1732 aaPredicted RBP13□□□□□ -0.33
SMC1A-203ENST00000428014 QRICH2Q9H0J4 1663 aa13□□□□□ -0.33
SMC1A-203ENST00000428014 ATAD2Q6PL18 1390 aa13□□□□□ -0.33
SMC1A-203ENST00000428014 SAFB2Q14151 953 aaKnown RBP eCLIP13□□□□□ -0.33
SMC1A-203ENST00000428014 ALS2Q96Q42 1657 aa12.99□□□□□ -0.33
SMC1A-203ENST00000428014 ILDR2Q71H61 639 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms