RNA–Protein interactions for RNA: ENST00000427506.5

GPC1-205, Transcript of glypican 1, humanhuman

TSL 3

Gene GPC1, Length 573 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-205ENST00000427506 MEX3CQ5U5Q3 659 aaKnown RBP26.9■■□□□ 1.9
GPC1-205ENST00000427506 LRRC59Q96AG4 307 aaKnown RBP26.9■■□□□ 1.9
GPC1-205ENST00000427506 LAMC1P11047 1609 aa26.9■■□□□ 1.9
GPC1-205ENST00000427506 PLEKHH1Q9ULM0 1364 aa26.89■■□□□ 1.9
GPC1-205ENST00000427506 KNDC1Q76NI1 1749 aa26.89■■□□□ 1.9
GPC1-205ENST00000427506 NHSL1Q5SYE7 1610 aa26.89■■□□□ 1.9
GPC1-205ENST00000427506 SHPRHQ149N8 1683 aa26.87■■□□□ 1.89
GPC1-205ENST00000427506 CDC42BPGQ6DT37 1551 aa26.87■■□□□ 1.89
GPC1-205ENST00000427506 NUTM2BA6NNL0 878 aaPredicted RBP26.86■■□□□ 1.89
GPC1-205ENST00000427506 NUTM2EB1AL46 878 aaPredicted RBP26.86■■□□□ 1.89
GPC1-205ENST00000427506 ESCO1Q5FWF5 840 aa26.86■■□□□ 1.89
GPC1-205ENST00000427506 NUTM2AQ8IVF1 878 aaPredicted RBP26.86■■□□□ 1.89
GPC1-205ENST00000427506 SIRT1Q96EB6 747 aa26.86■■□□□ 1.89
GPC1-205ENST00000427506 NUTM2FA1L443 756 aa26.85■■□□□ 1.89
GPC1-205ENST00000427506 STAC3Q96MF2 364 aa26.85■■□□□ 1.89
GPC1-205ENST00000427506 LRP6O75581 1613 aa26.83■■□□□ 1.89
GPC1-205ENST00000427506 SAFB2Q14151 953 aaKnown RBP eCLIP26.81■■□□□ 1.88
GPC1-205ENST00000427506 POTEAQ6S8J7 498 aa26.81■■□□□ 1.88
GPC1-205ENST00000427506 PRAM1Q96QH2 718 aa26.81■■□□□ 1.88
GPC1-205ENST00000427506 POGKQ9P215 609 aa26.81■■□□□ 1.88
GPC1-205ENST00000427506 TRAK1Q9UPV9 953 aa26.78■■□□□ 1.88
GPC1-205ENST00000427506 SOS2Q07890 1332 aaPredicted RBP26.78■■□□□ 1.88
GPC1-205ENST00000427506 PNPLA6Q8IY17 1366 aa26.77■■□□□ 1.88
GPC1-205ENST00000427506 NPHP3Q7Z494 1330 aa26.76■■□□□ 1.87
GPC1-205ENST00000427506 FOXO3O43524 673 aa26.75■■□□□ 1.87
GPC1-205ENST00000427506 ADGRB1O14514 1584 aa26.75■■□□□ 1.87
GPC1-205ENST00000427506 DLC1Q96QB1 1528 aa26.75■■□□□ 1.87
GPC1-205ENST00000427506 ZNF772Q68DY9 489 aaPredicted RBP26.73■■□□□ 1.87
GPC1-205ENST00000427506 FMN2Q9NZ56 1722 aa26.72■■□□□ 1.87
GPC1-205ENST00000427506 XPCQ01831 940 aaPredicted RBP26.71■■□□□ 1.87
GPC1-205ENST00000427506 C8orf37Q96NL8 207 aa26.68■■□□□ 1.86
GPC1-205ENST00000427506 HIRIP3Q9BW71 556 aaPredicted RBP26.67■■□□□ 1.86
GPC1-205ENST00000427506 MINK1Q8N4C8 1332 aaPredicted RBP26.66■■□□□ 1.86
GPC1-205ENST00000427506 ADAMTS2O95450 1211 aa26.66■■□□□ 1.86
GPC1-205ENST00000427506 PXDNQ92626 1479 aa26.66■■□□□ 1.86
GPC1-205ENST00000427506 AFF2P51816 1311 aa26.65■■□□□ 1.86
GPC1-205ENST00000427506 PHF8Q9UPP1 1060 aa26.65■■□□□ 1.86
GPC1-205ENST00000427506 KIF1AQ12756 1690 aa26.63■■□□□ 1.85
GPC1-205ENST00000427506 KRT28Q7Z3Y7 464 aa26.62■■□□□ 1.85
GPC1-205ENST00000427506 NGLY1Q96IV0 654 aa26.62■■□□□ 1.85
GPC1-205ENST00000427506 SIN3AQ96ST3 1273 aa26.61■■□□□ 1.85
GPC1-205ENST00000427506 NEUROD1Q13562 356 aa26.6■■□□□ 1.85
GPC1-205ENST00000427506 ADGRB2O60241 1585 aa26.59■■□□□ 1.85
GPC1-205ENST00000427506 ANKARQ7Z5J8 1434 aa26.59■■□□□ 1.85
GPC1-205ENST00000427506 PSME1Q06323 249 aa26.59■■□□□ 1.85
GPC1-205ENST00000427506 RGPD8O14715 1765 aaPredicted RBP26.58■■□□□ 1.85
GPC1-205ENST00000427506 WASLO00401 505 aaPredicted RBP26.58■■□□□ 1.85
GPC1-205ENST00000427506 RXRBP28702 533 aa26.58■■□□□ 1.85
GPC1-205ENST00000427506 PMFBP1Q8TBY8 1022 aa26.58■■□□□ 1.85
GPC1-205ENST00000427506 L3MBTL2Q969R5 705 aa26.58■■□□□ 1.85
GPC1-205ENST00000427506 EIF3AQ14152 1382 aaKnown RBP26.58■■□□□ 1.84
GPC1-205ENST00000427506 COL22A1Q8NFW1 1626 aaPredicted RBP26.57■■□□□ 1.84
GPC1-205ENST00000427506 NBPF1Q3BBV0 1214 aa26.56■■□□□ 1.84
GPC1-205ENST00000427506 SPATA31A3Q5VYP0 1347 aa26.56■■□□□ 1.84
GPC1-205ENST00000427506 KIAA1210Q9ULL0 1709 aa26.56■■□□□ 1.84
GPC1-205ENST00000427506 TRIM26Q12899 539 aaPredicted RBP26.55■■□□□ 1.84
GPC1-205ENST00000427506 ARHGEF28Q8N1W1 1705 aaKnown RBP26.55■■□□□ 1.84
GPC1-205ENST00000427506 QTRT2Q9H974 415 aaKnown RBP26.54■■□□□ 1.84
GPC1-205ENST00000427506 USP32Q8NFA0 1604 aa26.53■■□□□ 1.84
GPC1-205ENST00000427506 LMOD2Q6P5Q4 547 aa26.52■■□□□ 1.84
GPC1-205ENST00000427506 TULP4Q9NRJ4 1543 aa26.51■■□□□ 1.83
GPC1-205ENST00000427506 PRR36Q9H6K5 1346 aa26.51■■□□□ 1.83
GPC1-205ENST00000427506 USP21Q9UK80 565 aa26.51■■□□□ 1.83
GPC1-205ENST00000427506 TNS3Q68CZ2 1445 aa26.49■■□□□ 1.83
GPC1-205ENST00000427506 PLEKHG5O94827 1062 aa26.49■■□□□ 1.83
GPC1-205ENST00000427506 HAP1P54257 671 aaPredicted RBP26.49■■□□□ 1.83
GPC1-205ENST00000427506 SBNO1A3KN83 1393 aa26.47■■□□□ 1.83
GPC1-205ENST00000427506 GPRASP1Q5JY77 1395 aa26.47■■□□□ 1.83
GPC1-205ENST00000427506 RBM6P78332 1123 aaKnown RBP26.47■■□□□ 1.83
GPC1-205ENST00000427506 NGDNQ8NEJ9 315 aaKnown RBP26.47■■□□□ 1.83
GPC1-205ENST00000427506 CDK19Q9BWU1 502 aa26.47■■□□□ 1.83
GPC1-205ENST00000427506 FNBP4Q8N3X1 1017 aaPredicted RBP26.46■■□□□ 1.83
GPC1-205ENST00000427506 NUDT16Q96DE0 195 aaKnown RBP26.46■■□□□ 1.83
GPC1-205ENST00000427506 TRPC5Q9UL62 973 aaPredicted RBP26.44■■□□□ 1.82
GPC1-205ENST00000427506 ARHGEF10O15013 1369 aa26.44■■□□□ 1.82
GPC1-205ENST00000427506 CENPJQ9HC77 1338 aaPredicted RBP26.43■■□□□ 1.82
GPC1-205ENST00000427506 CABLES1Q8TDN4 633 aa26.43■■□□□ 1.82
GPC1-205ENST00000427506 CDK12Q9NYV4 1490 aaPredicted RBP26.42■■□□□ 1.82
GPC1-205ENST00000427506 ATP7BP35670 1465 aa26.41■■□□□ 1.82
GPC1-205ENST00000427506 MARF1Q9Y4F3 1742 aaKnown RBP26.39■■□□□ 1.82
GPC1-205ENST00000427506 PAK3O75914 559 aaPredicted RBP26.39■■□□□ 1.82
GPC1-205ENST00000427506 ROCK2O75116 1388 aaKnown RBP26.38■■□□□ 1.81
GPC1-205ENST00000427506 SRPK2P78362 688 aaKnown RBP26.38■■□□□ 1.81
GPC1-205ENST00000427506 ITSN1Q15811 1721 aa26.37■■□□□ 1.81
GPC1-205ENST00000427506 CCDC61Q9Y6R9 512 aa26.37■■□□□ 1.81
GPC1-205ENST00000427506 TRPM1Q7Z4N2 1603 aa26.36■■□□□ 1.81
GPC1-205ENST00000427506 RGS12O14924 1447 aa26.35■■□□□ 1.81
GPC1-205ENST00000427506 ATRNO75882 1429 aa26.35■■□□□ 1.81
GPC1-205ENST00000427506 BCL9LQ86UU0 1499 aa26.35■■□□□ 1.81
GPC1-205ENST00000427506 TONSLQ96HA7 1378 aa26.34■■□□□ 1.81
GPC1-205ENST00000427506 TRPM3Q9HCF6 1732 aaPredicted RBP26.34■■□□□ 1.81
GPC1-205ENST00000427506 UNC5CLQ8IV45 518 aa26.32■■□□□ 1.8
GPC1-205ENST00000427506 CABP2Q9NPB3 220 aa26.32■■□□□ 1.8
GPC1-205ENST00000427506 ACEP12821 1306 aa26.32■■□□□ 1.8
GPC1-205ENST00000427506 QRICH2Q9H0J4 1663 aa26.31■■□□□ 1.8
GPC1-205ENST00000427506 NBPF8Q3BBV2 869 aa26.31■■□□□ 1.8
GPC1-205ENST00000427506 SLIT2O94813 1529 aa26.29■■□□□ 1.8
GPC1-205ENST00000427506 ALS2Q96Q42 1657 aa26.29■■□□□ 1.8
GPC1-205ENST00000427506 PLEKHG3A1L390 1219 aa26.29■■□□□ 1.8
GPC1-205ENST00000427506 UPF1Q92900 1129 aaKnown RBP eCLIP26.29■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms