RNA–Protein interactions for RNA: ENST00000426962.1

LINC01238-202, Transcript of long intergenic non-protein coding RNA 1238, humanhuman

TSL 2

Gene LINC01238, Length 430 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01238-202ENST00000426962 ORAI2Q96SN7 254 aa15.69■□□□□ 0.1
LINC01238-202ENST00000426962 COL16A1Q07092 1604 aaPredicted RBP15.68■□□□□ 0.1
LINC01238-202ENST00000426962 DDX17Q92841 729 aaKnown RBP15.68■□□□□ 0.1
LINC01238-202ENST00000426962 PLEKHH1Q9ULM0 1364 aa15.66■□□□□ 0.1
LINC01238-202ENST00000426962 ESCO1Q5FWF5 840 aa15.66■□□□□ 0.1
LINC01238-202ENST00000426962 PRAM1Q96QH2 718 aa15.64■□□□□ 0.09
LINC01238-202ENST00000426962 POGKQ9P215 609 aa15.64■□□□□ 0.09
LINC01238-202ENST00000426962 NUTM2FA1L443 756 aa15.63■□□□□ 0.09
LINC01238-202ENST00000426962 MEX3CQ5U5Q3 659 aaKnown RBP15.63■□□□□ 0.09
LINC01238-202ENST00000426962 TRAK1Q9UPV9 953 aa15.63■□□□□ 0.09
LINC01238-202ENST00000426962 LAMC1P11047 1609 aa15.63■□□□□ 0.09
LINC01238-202ENST00000426962 SOS2Q07890 1332 aaPredicted RBP15.63■□□□□ 0.09
LINC01238-202ENST00000426962 NUTM2BA6NNL0 878 aaPredicted RBP15.62■□□□□ 0.09
LINC01238-202ENST00000426962 NUTM2EB1AL46 878 aaPredicted RBP15.62■□□□□ 0.09
LINC01238-202ENST00000426962 NUTM2AQ8IVF1 878 aaPredicted RBP15.62■□□□□ 0.09
LINC01238-202ENST00000426962 KNDC1Q76NI1 1749 aa15.62■□□□□ 0.09
LINC01238-202ENST00000426962 NHSL1Q5SYE7 1610 aa15.61■□□□□ 0.09
LINC01238-202ENST00000426962 FOXO3O43524 673 aa15.61■□□□□ 0.09
LINC01238-202ENST00000426962 SAFB2Q14151 953 aaKnown RBP eCLIP15.61■□□□□ 0.09
LINC01238-202ENST00000426962 POTEAQ6S8J7 498 aa15.61■□□□□ 0.09
LINC01238-202ENST00000426962 NPHP3Q7Z494 1330 aa15.61■□□□□ 0.09
LINC01238-202ENST00000426962 CDC42BPGQ6DT37 1551 aa15.61■□□□□ 0.09
LINC01238-202ENST00000426962 SHPRHQ149N8 1683 aa15.59■□□□□ 0.09
LINC01238-202ENST00000426962 DLC1Q96QB1 1528 aa15.58■□□□□ 0.09
LINC01238-202ENST00000426962 ADGRB1O14514 1584 aa15.58■□□□□ 0.09
LINC01238-202ENST00000426962 LRP6O75581 1613 aa15.58■□□□□ 0.09
LINC01238-202ENST00000426962 PNPLA6Q8IY17 1366 aa15.58■□□□□ 0.08
LINC01238-202ENST00000426962 TRIM26Q12899 539 aaPredicted RBP15.57■□□□□ 0.08
LINC01238-202ENST00000426962 ZNF772Q68DY9 489 aaPredicted RBP15.57■□□□□ 0.08
LINC01238-202ENST00000426962 SIN3AQ96ST3 1273 aa15.56■□□□□ 0.08
LINC01238-202ENST00000426962 XPCQ01831 940 aaPredicted RBP15.55■□□□□ 0.08
LINC01238-202ENST00000426962 L3MBTL2Q969R5 705 aa15.55■□□□□ 0.08
LINC01238-202ENST00000426962 PHF8Q9UPP1 1060 aa15.55■□□□□ 0.08
LINC01238-202ENST00000426962 MINK1Q8N4C8 1332 aaPredicted RBP15.54■□□□□ 0.08
LINC01238-202ENST00000426962 NEUROD1Q13562 356 aa15.54■□□□□ 0.08
LINC01238-202ENST00000426962 KRT28Q7Z3Y7 464 aa15.54■□□□□ 0.08
LINC01238-202ENST00000426962 HIRIP3Q9BW71 556 aaPredicted RBP15.54■□□□□ 0.08
LINC01238-202ENST00000426962 FMN2Q9NZ56 1722 aa15.52■□□□□ 0.08
LINC01238-202ENST00000426962 WASLO00401 505 aaPredicted RBP15.52■□□□□ 0.08
LINC01238-202ENST00000426962 ADAMTS2O95450 1211 aa15.52■□□□□ 0.08
LINC01238-202ENST00000426962 PSME1Q06323 249 aa15.52■□□□□ 0.08
LINC01238-202ENST00000426962 NBPF1Q3BBV0 1214 aa15.52■□□□□ 0.08
LINC01238-202ENST00000426962 C8orf37Q96NL8 207 aa15.52■□□□□ 0.08
LINC01238-202ENST00000426962 AFF2P51816 1311 aa15.51■□□□□ 0.07
LINC01238-202ENST00000426962 PXDNQ92626 1479 aa15.51■□□□□ 0.07
LINC01238-202ENST00000426962 PMFBP1Q8TBY8 1022 aa15.5■□□□□ 0.07
LINC01238-202ENST00000426962 NGLY1Q96IV0 654 aa15.5■□□□□ 0.07
LINC01238-202ENST00000426962 ANKARQ7Z5J8 1434 aa15.5■□□□□ 0.07
LINC01238-202ENST00000426962 EIF3AQ14152 1382 aaKnown RBP15.49■□□□□ 0.07
LINC01238-202ENST00000426962 SPATA31A3Q5VYP0 1347 aa15.49■□□□□ 0.07
LINC01238-202ENST00000426962 RXRBP28702 533 aa15.48■□□□□ 0.07
LINC01238-202ENST00000426962 QTRT2Q9H974 415 aaKnown RBP15.47■□□□□ 0.07
LINC01238-202ENST00000426962 PRR36Q9H6K5 1346 aa15.46■□□□□ 0.07
LINC01238-202ENST00000426962 KIAA1210Q9ULL0 1709 aa15.46■□□□□ 0.07
LINC01238-202ENST00000426962 ADGRB2O60241 1585 aa15.46■□□□□ 0.07
LINC01238-202ENST00000426962 CDK19Q9BWU1 502 aa15.46■□□□□ 0.07
LINC01238-202ENST00000426962 KIF1AQ12756 1690 aa15.46■□□□□ 0.07
LINC01238-202ENST00000426962 FNBP4Q8N3X1 1017 aaPredicted RBP15.45■□□□□ 0.06
LINC01238-202ENST00000426962 NUDT16Q96DE0 195 aaKnown RBP15.45■□□□□ 0.06
LINC01238-202ENST00000426962 SBNO1A3KN83 1393 aa15.45■□□□□ 0.06
LINC01238-202ENST00000426962 RGPD8O14715 1765 aaPredicted RBP15.44■□□□□ 0.06
LINC01238-202ENST00000426962 USP21Q9UK80 565 aa15.44■□□□□ 0.06
LINC01238-202ENST00000426962 COL22A1Q8NFW1 1626 aaPredicted RBP15.43■□□□□ 0.06
LINC01238-202ENST00000426962 RBM6P78332 1123 aaKnown RBP15.43■□□□□ 0.06
LINC01238-202ENST00000426962 LMOD2Q6P5Q4 547 aa15.43■□□□□ 0.06
LINC01238-202ENST00000426962 NGDNQ8NEJ9 315 aaKnown RBP15.43■□□□□ 0.06
LINC01238-202ENST00000426962 GPRASP1Q5JY77 1395 aa15.43■□□□□ 0.06
LINC01238-202ENST00000426962 TULP4Q9NRJ4 1543 aa15.43■□□□□ 0.06
LINC01238-202ENST00000426962 CENPJQ9HC77 1338 aaPredicted RBP15.43■□□□□ 0.06
LINC01238-202ENST00000426962 ARHGEF28Q8N1W1 1705 aaKnown RBP15.42■□□□□ 0.06
LINC01238-202ENST00000426962 USP32Q8NFA0 1604 aa15.42■□□□□ 0.06
LINC01238-202ENST00000426962 TNS3Q68CZ2 1445 aa15.42■□□□□ 0.06
LINC01238-202ENST00000426962 HAP1P54257 671 aaPredicted RBP15.41■□□□□ 0.06
LINC01238-202ENST00000426962 TRPC5Q9UL62 973 aaPredicted RBP15.41■□□□□ 0.06
LINC01238-202ENST00000426962 CCDC61Q9Y6R9 512 aa15.41■□□□□ 0.06
LINC01238-202ENST00000426962 ARHGEF10O15013 1369 aa15.4■□□□□ 0.06
LINC01238-202ENST00000426962 NBPF8Q3BBV2 869 aa15.39■□□□□ 0.05
LINC01238-202ENST00000426962 CABLES1Q8TDN4 633 aa15.39■□□□□ 0.05
LINC01238-202ENST00000426962 ROCK2O75116 1388 aaKnown RBP15.38■□□□□ 0.05
LINC01238-202ENST00000426962 PLEKHG3A1L390 1219 aa15.38■□□□□ 0.05
LINC01238-202ENST00000426962 PAK3O75914 559 aaPredicted RBP15.38■□□□□ 0.05
LINC01238-202ENST00000426962 SRPK2P78362 688 aaKnown RBP15.38■□□□□ 0.05
LINC01238-202ENST00000426962 PLEKHG5O94827 1062 aa15.37■□□□□ 0.05
LINC01238-202ENST00000426962 ATP7BP35670 1465 aa15.37■□□□□ 0.05
LINC01238-202ENST00000426962 CDK12Q9NYV4 1490 aaPredicted RBP15.37■□□□□ 0.05
LINC01238-202ENST00000426962 TONSLQ96HA7 1378 aa15.36■□□□□ 0.05
LINC01238-202ENST00000426962 UNC5CLQ8IV45 518 aa15.36■□□□□ 0.05
LINC01238-202ENST00000426962 CABP2Q9NPB3 220 aa15.36■□□□□ 0.05
LINC01238-202ENST00000426962 ACEP12821 1306 aa15.36■□□□□ 0.05
LINC01238-202ENST00000426962 BCL9LQ86UU0 1499 aa15.35■□□□□ 0.05
LINC01238-202ENST00000426962 GJD4Q96KN9 370 aaPredicted RBP15.34■□□□□ 0.05
LINC01238-202ENST00000426962 TRPM1Q7Z4N2 1603 aa15.34■□□□□ 0.05
LINC01238-202ENST00000426962 EVC2Q86UK5 1308 aa15.34■□□□□ 0.05
LINC01238-202ENST00000426962 POLR3AO14802 1390 aaPredicted RBP15.34■□□□□ 0.05
LINC01238-202ENST00000426962 ATRNO75882 1429 aa15.34■□□□□ 0.05
LINC01238-202ENST00000426962 FAM83GA6ND36 823 aa15.33■□□□□ 0.04
LINC01238-202ENST00000426962 CARD11Q9BXL7 1154 aa15.33■□□□□ 0.04
LINC01238-202ENST00000426962 CABP1Q9NZU7 370 aa15.32■□□□□ 0.04
LINC01238-202ENST00000426962 SLIT2O94813 1529 aa15.32■□□□□ 0.04
LINC01238-202ENST00000426962 UPF1Q92900 1129 aaKnown RBP eCLIP15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms