RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 CAGE1Q8TC20 777 aa8.25□□□□□ -1.09
SCN1A-204ENST00000423058 SMARCE1Q969G3 411 aa8.25□□□□□ -1.09
SCN1A-204ENST00000423058 API5Q9BZZ5 524 aaKnown RBP8.24□□□□□ -1.09
SCN1A-204ENST00000423058 GPRASP1Q5JY77 1395 aa8.24□□□□□ -1.09
SCN1A-204ENST00000423058 PIP4K2AP48426 406 aaPredicted RBP8.24□□□□□ -1.09
SCN1A-204ENST00000423058 WASHC4Q2M389 1173 aa8.24□□□□□ -1.09
SCN1A-204ENST00000423058 SMC3Q9UQE7 1217 aa8.24□□□□□ -1.09
SCN1A-204ENST00000423058 HIP1O00291 1037 aa8.23□□□□□ -1.09
SCN1A-204ENST00000423058 INTS3Q68E01 1043 aaKnown RBP8.23□□□□□ -1.09
SCN1A-204ENST00000423058 MYBBP1AQ9BQG0 1328 aaKnown RBP8.23□□□□□ -1.09
SCN1A-204ENST00000423058 CECR2Q9BXF3 1484 aa8.23□□□□□ -1.09
SCN1A-204ENST00000423058 KRT18P05783 430 aaKnown RBP8.23□□□□□ -1.09
SCN1A-204ENST00000423058 KIF7Q2M1P5 1343 aa8.23□□□□□ -1.09
SCN1A-204ENST00000423058 FKBP5Q13451 457 aaPredicted RBP8.23□□□□□ -1.09
SCN1A-204ENST00000423058 NEFHP12036 1026 aa8.23□□□□□ -1.09
SCN1A-204ENST00000423058 FILIP1LQ4L180 1135 aa8.23□□□□□ -1.09
SCN1A-204ENST00000423058 CCDC97Q96F63 343 aaPredicted RBP8.23□□□□□ -1.09
SCN1A-204ENST00000423058 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.23□□□□□ -1.09
SCN1A-204ENST00000423058 MPHOSPH10O00566 681 aaKnown RBP8.23□□□□□ -1.09
SCN1A-204ENST00000423058 VPS8Q8N3P4 1428 aa8.22□□□□□ -1.09
SCN1A-204ENST00000423058 CCP110O43303 1012 aa8.22□□□□□ -1.09
SCN1A-204ENST00000423058 DIAPH1O60610 1272 aaKnown RBP8.22□□□□□ -1.09
SCN1A-204ENST00000423058 ZNF771Q7L3S4 317 aaPredicted RBP8.22□□□□□ -1.09
SCN1A-204ENST00000423058 NEUROD6Q96NK8 337 aa8.22□□□□□ -1.09
SCN1A-204ENST00000423058 ERC1Q8IUD2 1116 aa8.22□□□□□ -1.09
SCN1A-204ENST00000423058 NEBLO76041 1014 aa8.22□□□□□ -1.09
SCN1A-204ENST00000423058 EZRP15311 586 aaKnown RBP8.22□□□□□ -1.09
SCN1A-204ENST00000423058 CNTROBQ8N137 903 aa8.22□□□□□ -1.09
SCN1A-204ENST00000423058 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.22□□□□□ -1.09
SCN1A-204ENST00000423058 TSPYL4Q9UJ04 414 aa8.22□□□□□ -1.09
SCN1A-204ENST00000423058 STIM1Q13586 685 aa8.21□□□□□ -1.09
SCN1A-204ENST00000423058 GBP2P32456 591 aaPredicted RBP8.21□□□□□ -1.09
SCN1A-204ENST00000423058 OSCARQ8IYS5 282 aa8.21□□□□□ -1.09
SCN1A-204ENST00000423058 MNS1Q8NEH6 495 aa8.21□□□□□ -1.09
SCN1A-204ENST00000423058 IPO9Q96P70 1041 aaKnown RBP8.21□□□□□ -1.09
SCN1A-204ENST00000423058 MYO15BQ96JP2 1530 aa8.21□□□□□ -1.09
SCN1A-204ENST00000423058 DHX8Q14562 1220 aaKnown RBP8.21□□□□□ -1.1
SCN1A-204ENST00000423058 FOXD4L6Q3SYB3 417 aaPredicted RBP8.21□□□□□ -1.1
SCN1A-204ENST00000423058 FOXD4L3Q6VB84 417 aaPredicted RBP8.21□□□□□ -1.1
SCN1A-204ENST00000423058 DHX57Q6P158 1386 aaKnown RBP8.21□□□□□ -1.1
SCN1A-204ENST00000423058 TMEM87AQ8NBN3 555 aa8.21□□□□□ -1.1
SCN1A-204ENST00000423058 PLIN1O60240 522 aa8.21□□□□□ -1.1
SCN1A-204ENST00000423058 LETM1O95202 739 aaPredicted RBP8.2□□□□□ -1.1
SCN1A-204ENST00000423058 PDCL3Q9H2J4 239 aa8.2□□□□□ -1.1
SCN1A-204ENST00000423058 ZNHIT6Q9NWK9 470 aaKnown RBP8.2□□□□□ -1.1
SCN1A-204ENST00000423058 FAM161AQ3B820 660 aa8.2□□□□□ -1.1
SCN1A-204ENST00000423058 CWC15Q9P013 229 aaKnown RBP8.2□□□□□ -1.1
SCN1A-204ENST00000423058 GOLGA6L10A6NI86 522 aa8.2□□□□□ -1.1
SCN1A-204ENST00000423058 NUCB2P80303 420 aa8.2□□□□□ -1.1
SCN1A-204ENST00000423058 MINK1Q8N4C8 1332 aaPredicted RBP8.2□□□□□ -1.1
SCN1A-204ENST00000423058 SLC4A3P48751 1232 aa8.2□□□□□ -1.1
SCN1A-204ENST00000423058 CYB5RLQ6IPT4 315 aa8.2□□□□□ -1.1
SCN1A-204ENST00000423058 NECTIN2Q92692 538 aa8.2□□□□□ -1.1
SCN1A-204ENST00000423058 PPM1FP49593 454 aaPredicted RBP8.19□□□□□ -1.1
SCN1A-204ENST00000423058 GNAI1P63096 354 aa8.19□□□□□ -1.1
SCN1A-204ENST00000423058 VPS37CA5D8V6 355 aaPredicted RBP8.19□□□□□ -1.1
SCN1A-204ENST00000423058 NLRP2Q9NX02 1062 aa8.19□□□□□ -1.1
SCN1A-204ENST00000423058 RRP7AQ9Y3A4 280 aaKnown RBP8.19□□□□□ -1.1
SCN1A-204ENST00000423058 SPDYE4A6NLX3 237 aa8.19□□□□□ -1.1
SCN1A-204ENST00000423058 MATR3P43243 847 aaKnown RBP eCLIP8.19□□□□□ -1.11e-10■■■■■ 37.8
SCN1A-204ENST00000423058 RBM5P52756 815 aaKnown RBP eCLIP8.19□□□□□ -1.1
SCN1A-204ENST00000423058 ATP2B2Q01814 1243 aa8.19□□□□□ -1.1
SCN1A-204ENST00000423058 HSP90AA2PQ14568 343 aaPredicted RBP8.19□□□□□ -1.1
SCN1A-204ENST00000423058 ELL2O00472 640 aaPredicted RBP8.19□□□□□ -1.1
SCN1A-204ENST00000423058 RAB3GAP2Q9H2M9 1393 aa8.19□□□□□ -1.1
SCN1A-204ENST00000423058 AAMPQ13685 434 aa8.19□□□□□ -1.1
SCN1A-204ENST00000423058 RABEP1Q15276 862 aa8.18□□□□□ -1.1
SCN1A-204ENST00000423058 PDILTQ8N807 584 aa8.18□□□□□ -1.1
SCN1A-204ENST00000423058 UBTFL1P0CB47 393 aaPredicted RBP8.18□□□□□ -1.1
SCN1A-204ENST00000423058 RIPK4P57078 832 aa8.18□□□□□ -1.1
SCN1A-204ENST00000423058 RAPGEF2Q9Y4G8 1499 aa8.18□□□□□ -1.1
SCN1A-204ENST00000423058 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.18□□□□□ -1.1
SCN1A-204ENST00000423058 PDCP20941 246 aa8.18□□□□□ -1.1
SCN1A-204ENST00000423058 NACAP1Q9BZK3 213 aa8.18□□□□□ -1.1
SCN1A-204ENST00000423058 CCDC158Q5M9N0 1113 aa8.18□□□□□ -1.1
SCN1A-204ENST00000423058 VSIG10Q8N0Z9 540 aa8.18□□□□□ -1.1
SCN1A-204ENST00000423058 PANK3Q9H999 370 aa8.18□□□□□ -1.1
SCN1A-204ENST00000423058 CNNM1Q9NRU3 951 aa8.18□□□□□ -1.1
SCN1A-204ENST00000423058 POTEJP0CG39 1038 aa8.18□□□□□ -1.1
SCN1A-204ENST00000423058 JMYQ8N9B5 988 aa8.18□□□□□ -1.1
SCN1A-204ENST00000423058 JPH4Q96JJ6 628 aa8.18□□□□□ -1.1
SCN1A-204ENST00000423058 MTMR7Q9Y216 660 aa8.18□□□□□ -1.1
SCN1A-204ENST00000423058 STAC3Q96MF2 364 aa8.18□□□□□ -1.1
SCN1A-204ENST00000423058 SDF4Q9BRK5 362 aa8.18□□□□□ -1.1
SCN1A-204ENST00000423058 RBM19Q9Y4C8 960 aaKnown RBP8.18□□□□□ -1.1
SCN1A-204ENST00000423058 TTC39AQ5SRH9 613 aa8.17□□□□□ -1.1
SCN1A-204ENST00000423058 CCDC30Q5VVM6 783 aa8.17□□□□□ -1.1
SCN1A-204ENST00000423058 GOLGA6L7A0A1B0GV03 622 aa8.17□□□□□ -1.1
SCN1A-204ENST00000423058 AIMP1Q12904 312 aaKnown RBP8.17□□□□□ -1.1
SCN1A-204ENST00000423058 ZSCAN25Q6NSZ9 544 aa8.17□□□□□ -1.1
SCN1A-204ENST00000423058 ZNF396Q96N95 335 aaPredicted RBP8.17□□□□□ -1.1
SCN1A-204ENST00000423058 DACH1Q9UI36 760 aa8.17□□□□□ -1.1
SCN1A-204ENST00000423058 CUX1P39880 1505 aa8.17□□□□□ -1.1
SCN1A-204ENST00000423058 ANKRD62A6NC57 917 aa8.17□□□□□ -1.1
SCN1A-204ENST00000423058 TNIP1Q15025 636 aa8.17□□□□□ -1.1
SCN1A-204ENST00000423058 H0YHG0 523 aa8.17□□□□□ -1.1
SCN1A-204ENST00000423058 PLEKHO1Q53GL0 409 aaPredicted RBP8.17□□□□□ -1.1
SCN1A-204ENST00000423058 MTERF4Q7Z6M4 381 aaKnown RBP8.17□□□□□ -1.1
SCN1A-204ENST00000423058 KINO60870 393 aaKnown RBP8.17□□□□□ -1.1
SCN1A-204ENST00000423058 IFT57Q9NWB7 429 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms