RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 TMEM132EQ6IEE7 984 aa12.2□□□□□ -0.46
VIM-202ENST00000421459 USP21Q9UK80 565 aa12.2□□□□□ -0.46
VIM-202ENST00000421459 CDK12Q9NYV4 1490 aaPredicted RBP12.2□□□□□ -0.46
VIM-202ENST00000421459 SRCAPQ6ZRS2 3230 aa12.19□□□□□ -0.46
VIM-202ENST00000421459 KIF1BO60333 1816 aa12.19□□□□□ -0.46
VIM-202ENST00000421459 FOXO3O43524 673 aa12.18□□□□□ -0.46
VIM-202ENST00000421459 PLEKHH1Q9ULM0 1364 aa12.18□□□□□ -0.46
VIM-202ENST00000421459 FNBP4Q8N3X1 1017 aaPredicted RBP12.16□□□□□ -0.46
VIM-202ENST00000421459 PLEKHG5O94827 1062 aa12.15□□□□□ -0.46
VIM-202ENST00000421459 MPHOSPH9Q99550 1183 aa12.15□□□□□ -0.46
VIM-202ENST00000421459 TRPC5Q9UL62 973 aaPredicted RBP12.15□□□□□ -0.46
VIM-202ENST00000421459 LAMC1P11047 1609 aa12.15□□□□□ -0.47
VIM-202ENST00000421459 PRAG1Q86YV5 1406 aa12.14□□□□□ -0.47
VIM-202ENST00000421459 PPLO60437 1756 aa12.14□□□□□ -0.47
VIM-202ENST00000421459 PXDNQ92626 1479 aa12.14□□□□□ -0.47
VIM-202ENST00000421459 NPHP3Q7Z494 1330 aa12.13□□□□□ -0.47
VIM-202ENST00000421459 ATRNO75882 1429 aa12.13□□□□□ -0.47
VIM-202ENST00000421459 SPATA31E1Q6ZUB1 1445 aa12.13□□□□□ -0.47
VIM-202ENST00000421459 CCDC144AA2RUR9 1427 aa12.12□□□□□ -0.47
VIM-202ENST00000421459 LRPPRCP42704 1394 aaKnown RBP12.12□□□□□ -0.47
VIM-202ENST00000421459 MYOM2P54296 1465 aa12.12□□□□□ -0.47
VIM-202ENST00000421459 BCL9LQ86UU0 1499 aa12.12□□□□□ -0.47
VIM-202ENST00000421459 EP400Q96L91 3159 aa12.11□□□□□ -0.47
VIM-202ENST00000421459 SAFB2Q14151 953 aaKnown RBP eCLIP12.11□□□□□ -0.47
VIM-202ENST00000421459 ATAD2Q6PL18 1390 aa12.1□□□□□ -0.47
VIM-202ENST00000421459 ABCC11Q96J66 1382 aa12.1□□□□□ -0.47
VIM-202ENST00000421459 CFAP70Q5T0N1 1121 aa12.1□□□□□ -0.47
VIM-202ENST00000421459 KRT28Q7Z3Y7 464 aa12.1□□□□□ -0.47
VIM-202ENST00000421459 CABLES1Q8TDN4 633 aa12.1□□□□□ -0.47
VIM-202ENST00000421459 CDC42BPGQ6DT37 1551 aa12.09□□□□□ -0.47
VIM-202ENST00000421459 ANKRD30BQ9BXX2 1392 aa12.09□□□□□ -0.47
VIM-202ENST00000421459 COL22A1Q8NFW1 1626 aaPredicted RBP12.09□□□□□ -0.47
VIM-202ENST00000421459 GJD4Q96KN9 370 aaPredicted RBP12.09□□□□□ -0.47
VIM-202ENST00000421459 TECPR2O15040 1411 aa12.09□□□□□ -0.47
VIM-202ENST00000421459 YTHDC2Q9H6S0 1430 aaKnown RBP12.09□□□□□ -0.47
VIM-202ENST00000421459 SPATA31A3Q5VYP0 1347 aa12.09□□□□□ -0.47
VIM-202ENST00000421459 PIK3C2GO75747 1445 aa12.08□□□□□ -0.48
VIM-202ENST00000421459 C14orf93Q9H972 538 aaKnown RBP12.07□□□□□ -0.48
VIM-202ENST00000421459 LMOD2Q6P5Q4 547 aa12.06□□□□□ -0.48
VIM-202ENST00000421459 UNC5CLQ8IV45 518 aa12.06□□□□□ -0.48
VIM-202ENST00000421459 PRAM1Q96QH2 718 aa12.06□□□□□ -0.48
VIM-202ENST00000421459 PHF8Q9UPP1 1060 aa12.06□□□□□ -0.48
VIM-202ENST00000421459 PMFBP1Q8TBY8 1022 aa12.05□□□□□ -0.48
VIM-202ENST00000421459 RALGAPBQ86X10 1494 aa12.04□□□□□ -0.48
VIM-202ENST00000421459 IFT172Q9UG01 1749 aa12.04□□□□□ -0.48
VIM-202ENST00000421459 SLIT2O94813 1529 aa12.04□□□□□ -0.48
VIM-202ENST00000421459 HAP1P54257 671 aaPredicted RBP12.03□□□□□ -0.48
VIM-202ENST00000421459 SIRT1Q96EB6 747 aa12.03□□□□□ -0.48
VIM-202ENST00000421459 HIRIP3Q9BW71 556 aaPredicted RBP12.03□□□□□ -0.48
VIM-202ENST00000421459 ZRANB1Q9UGI0 708 aa12.03□□□□□ -0.48
VIM-202ENST00000421459 DHX57Q6P158 1386 aaKnown RBP12.03□□□□□ -0.48
VIM-202ENST00000421459 FMN2Q9NZ56 1722 aa12.03□□□□□ -0.48
VIM-202ENST00000421459 GLI3P10071 1580 aa12.02□□□□□ -0.49
VIM-202ENST00000421459 PSME1Q06323 249 aa12.02□□□□□ -0.49
VIM-202ENST00000421459 DEFB132Q7Z7B7 95 aa12.02□□□□□ -0.49
VIM-202ENST00000421459 SEPT12Q8IYM1 358 aa12.02□□□□□ -0.49
VIM-202ENST00000421459 TRAK1Q9UPV9 953 aa12.02□□□□□ -0.49
VIM-202ENST00000421459 FAM83GA6ND36 823 aa12.01□□□□□ -0.49
VIM-202ENST00000421459 POGKQ9P215 609 aa12.01□□□□□ -0.49
VIM-202ENST00000421459 KDM2AQ9Y2K7 1162 aa12.01□□□□□ -0.49
VIM-202ENST00000421459 CCDC9Q9Y3X0 531 aaKnown RBP12.01□□□□□ -0.49
VIM-202ENST00000421459 TNS3Q68CZ2 1445 aa12.01□□□□□ -0.49
VIM-202ENST00000421459 NRXN1Q9ULB1 1477 aa12.01□□□□□ -0.49
VIM-202ENST00000421459 KNDC1Q76NI1 1749 aa12□□□□□ -0.49
VIM-202ENST00000421459 MINK1Q8N4C8 1332 aaPredicted RBP12□□□□□ -0.49
VIM-202ENST00000421459 VPS72Q15906 364 aa11.99□□□□□ -0.49
VIM-202ENST00000421459 CCDC125Q86Z20 511 aa11.99□□□□□ -0.49
VIM-202ENST00000421459 PRR36Q9H6K5 1346 aa11.99□□□□□ -0.49
VIM-202ENST00000421459 RAB3GAP2Q9H2M9 1393 aa11.99□□□□□ -0.49
VIM-202ENST00000421459 MARF1Q9Y4F3 1742 aaKnown RBP11.99□□□□□ -0.49
VIM-202ENST00000421459 RGPD8O14715 1765 aaPredicted RBP11.98□□□□□ -0.49
VIM-202ENST00000421459 USP32Q8NFA0 1604 aa11.98□□□□□ -0.49
VIM-202ENST00000421459 KIF1AQ12756 1690 aa11.97□□□□□ -0.49
VIM-202ENST00000421459 SBNO1A3KN83 1393 aa11.97□□□□□ -0.49
VIM-202ENST00000421459 DCAF11Q8TEB1 546 aa11.97□□□□□ -0.49
VIM-202ENST00000421459 BLMP54132 1417 aaPredicted RBP11.96□□□□□ -0.49
VIM-202ENST00000421459 A0A0G2JS52 829 aa11.96□□□□□ -0.49
VIM-202ENST00000421459 ONECUT3O60422 494 aaPredicted RBP11.96□□□□□ -0.49
VIM-202ENST00000421459 MYT1Q01538 1121 aa11.96□□□□□ -0.49
VIM-202ENST00000421459 FAM98CQ17RN3 349 aaKnown RBP11.96□□□□□ -0.49
VIM-202ENST00000421459 FAM182BQ5T319 152 aa11.96□□□□□ -0.49
VIM-202ENST00000421459 KRT27Q7Z3Y8 459 aa11.96□□□□□ -0.49
VIM-202ENST00000421459 BTG4Q9NY30 223 aa11.96□□□□□ -0.49
VIM-202ENST00000421459 ADGRB1O14514 1584 aa11.95□□□□□ -0.5
VIM-202ENST00000421459 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.94□□□□□ -0.5
VIM-202ENST00000421459 ARHGEF10O15013 1369 aa11.94□□□□□ -0.5
VIM-202ENST00000421459 PAK3O75914 559 aaPredicted RBP11.94□□□□□ -0.5
VIM-202ENST00000421459 BRWD3Q6RI45 1802 aa11.93□□□□□ -0.5
VIM-202ENST00000421459 ACIN1Q9UKV3 1341 aaKnown RBP11.93□□□□□ -0.5
VIM-202ENST00000421459 DLC1Q96QB1 1528 aa11.93□□□□□ -0.5
VIM-202ENST00000421459 WASLO00401 505 aaPredicted RBP11.93□□□□□ -0.5
VIM-202ENST00000421459 SF3B2Q13435 895 aaKnown RBP11.93□□□□□ -0.5
VIM-202ENST00000421459 ANKARQ7Z5J8 1434 aa11.93□□□□□ -0.5
VIM-202ENST00000421459 PLCH1Q4KWH8 1693 aa11.92□□□□□ -0.5
VIM-202ENST00000421459 PSDA5PKW4 1024 aaPredicted RBP11.92□□□□□ -0.5
VIM-202ENST00000421459 NUTM2GQ5VZR2 741 aa11.92□□□□□ -0.5
VIM-202ENST00000421459 NGDNQ8NEJ9 315 aaKnown RBP11.92□□□□□ -0.5
VIM-202ENST00000421459 GPRASP1Q5JY77 1395 aa11.92□□□□□ -0.5
VIM-202ENST00000421459 CHRNA2Q15822 529 aa11.91□□□□□ -0.5
VIM-202ENST00000421459 ABCA3Q99758 1704 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms