RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 ZNF692Q9BU19 519 aaPredicted RBP11.11□□□□□ -0.63
USP54-203ENST00000418501 ANKRD36BQ8N2N9 1353 aa11.1□□□□□ -0.63
USP54-203ENST00000418501 TBX22Q9Y458 520 aa11.1□□□□□ -0.63
USP54-203ENST00000418501 DLC1Q96QB1 1528 aa11.1□□□□□ -0.63
USP54-203ENST00000418501 PER1O15534 1290 aaPredicted RBP11.1□□□□□ -0.63
USP54-203ENST00000418501 PNISRQ8TF01 805 aaKnown RBP11.09□□□□□ -0.63
USP54-203ENST00000418501 CDK19Q9BWU1 502 aa11.09□□□□□ -0.63
USP54-203ENST00000418501 FAM135BQ49AJ0 1406 aa11.09□□□□□ -0.63
USP54-203ENST00000418501 PPP2R1AP30153 589 aa11.09□□□□□ -0.63
USP54-203ENST00000418501 MYO3AQ8NEV4 1616 aa11.09□□□□□ -0.63
USP54-203ENST00000418501 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.08□□□□□ -0.64
USP54-203ENST00000418501 CABP2Q9NPB3 220 aa11.07□□□□□ -0.64
USP54-203ENST00000418501 NSD3Q9BZ95 1437 aa11.07□□□□□ -0.64
USP54-203ENST00000418501 ALKQ9UM73 1620 aa11.07□□□□□ -0.64
USP54-203ENST00000418501 PIK3R4Q99570 1358 aa11.07□□□□□ -0.64
USP54-203ENST00000418501 ADGRB1O14514 1584 aa11.07□□□□□ -0.64
USP54-203ENST00000418501 WASLO00401 505 aaPredicted RBP11.06□□□□□ -0.64
USP54-203ENST00000418501 AMER1Q5JTC6 1135 aaPredicted RBP11.06□□□□□ -0.64
USP54-203ENST00000418501 SLC12A5Q9H2X9 1139 aa11.06□□□□□ -0.64
USP54-203ENST00000418501 CEBPAP49715 358 aaPredicted RBP11.05□□□□□ -0.64
USP54-203ENST00000418501 CCDC61Q9Y6R9 512 aa11.05□□□□□ -0.64
USP54-203ENST00000418501 SENP3Q9H4L4 574 aaPredicted RBP11.05□□□□□ -0.64
USP54-203ENST00000418501 SIGLEC1Q9BZZ2 1709 aa11.05□□□□□ -0.64
USP54-203ENST00000418501 C14orf37Q86TY3 774 aa11.05□□□□□ -0.64
USP54-203ENST00000418501 MAPK8IP3Q9UPT6 1336 aa11.04□□□□□ -0.64
USP54-203ENST00000418501 QRICH2Q9H0J4 1663 aa11.03□□□□□ -0.64
USP54-203ENST00000418501 COG3Q96JB2 828 aa11.03□□□□□ -0.64
USP54-203ENST00000418501 FKBP8Q14318 412 aa11.03□□□□□ -0.64
USP54-203ENST00000418501 DIP2AQ14689 1571 aa11.02□□□□□ -0.64
USP54-203ENST00000418501 FER1L4A9Z1Z3 1794 aa11.02□□□□□ -0.65
USP54-203ENST00000418501 NUDT16Q96DE0 195 aaKnown RBP11.01□□□□□ -0.65
USP54-203ENST00000418501 AMOTL2Q9Y2J4 779 aa11.01□□□□□ -0.65
USP54-203ENST00000418501 POLR3AO14802 1390 aaPredicted RBP11.01□□□□□ -0.65
USP54-203ENST00000418501 CALD1Q05682 793 aaKnown RBP11.01□□□□□ -0.65
USP54-203ENST00000418501 CABP1Q9NZU7 370 aa11.01□□□□□ -0.65
USP54-203ENST00000418501 ATP7BP35670 1465 aa11.01□□□□□ -0.65
USP54-203ENST00000418501 NGDNQ8NEJ9 315 aaKnown RBP11□□□□□ -0.65
USP54-203ENST00000418501 TECPR2O15040 1411 aa11□□□□□ -0.65
USP54-203ENST00000418501 SMG6Q86US8 1419 aaKnown RBP11□□□□□ -0.65
USP54-203ENST00000418501 WAPLQ7Z5K2 1190 aa10.99□□□□□ -0.65
USP54-203ENST00000418501 SLIT1O75093 1534 aa10.99□□□□□ -0.65
USP54-203ENST00000418501 SLC26A8Q96RN1 970 aa10.99□□□□□ -0.65
USP54-203ENST00000418501 TNNT2P45379 298 aaPredicted RBP10.99□□□□□ -0.65
USP54-203ENST00000418501 GOLGA2Q08379 1002 aa10.99□□□□□ -0.65
USP54-203ENST00000418501 RUNDC1Q96C34 613 aa10.99□□□□□ -0.65
USP54-203ENST00000418501 PTPRMP28827 1452 aa10.99□□□□□ -0.65
USP54-203ENST00000418501 CCDC184Q52MB2 194 aa10.98□□□□□ -0.65
USP54-203ENST00000418501 NCBP3Q53F19 620 aaKnown RBP10.98□□□□□ -0.65
USP54-203ENST00000418501 ARHGAP23Q9P227 1491 aa10.97□□□□□ -0.65
USP54-203ENST00000418501 DIAPH1O60610 1272 aaKnown RBP10.97□□□□□ -0.65
USP54-203ENST00000418501 U2AF1L5P0DN76 240 aaPredicted RBP10.97□□□□□ -0.65
USP54-203ENST00000418501 U2AF1Q01081 240 aaKnown RBP eCLIP10.97□□□□□ -0.65
USP54-203ENST00000418501 SUPT16HQ9Y5B9 1047 aaKnown RBP10.97□□□□□ -0.65
USP54-203ENST00000418501 EDC4Q6P2E9 1401 aaKnown RBP10.97□□□□□ -0.65
USP54-203ENST00000418501 LMOD3Q0VAK6 560 aa10.97□□□□□ -0.65
USP54-203ENST00000418501 TTC21AQ8NDW8 1320 aa10.97□□□□□ -0.65
USP54-203ENST00000418501 PPIP5K1Q6PFW1 1433 aa10.97□□□□□ -0.65
USP54-203ENST00000418501 METP08581 1390 aa10.97□□□□□ -0.65
USP54-203ENST00000418501 ARHGEF28Q8N1W1 1705 aaKnown RBP10.96□□□□□ -0.65
USP54-203ENST00000418501 U2SURPO15042 1029 aaKnown RBP10.96□□□□□ -0.65
USP54-203ENST00000418501 MYH16Q9H6N6 1097 aa10.96□□□□□ -0.65
USP54-203ENST00000418501 MED14O60244 1454 aa10.96□□□□□ -0.65
USP54-203ENST00000418501 E9PSI1 815 aa10.96□□□□□ -0.65
USP54-203ENST00000418501 LTKP29376 864 aa10.96□□□□□ -0.65
USP54-203ENST00000418501 MTHFSP49914 203 aa10.96□□□□□ -0.65
USP54-203ENST00000418501 CARD14Q9BXL6 1004 aa10.96□□□□□ -0.65
USP54-203ENST00000418501 PTCH1Q13635 1447 aa10.96□□□□□ -0.66
USP54-203ENST00000418501 A0A1W2PP64 1363 aa10.96□□□□□ -0.66
USP54-203ENST00000418501 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.96□□□□□ -0.66
USP54-203ENST00000418501 ADAMTS8Q9UP79 889 aa10.96□□□□□ -0.66
USP54-203ENST00000418501 HAP1P54257 671 aaPredicted RBP10.95□□□□□ -0.66
USP54-203ENST00000418501 MS4A1P11836 297 aa10.95□□□□□ -0.66
USP54-203ENST00000418501 PPP4R2Q9NY27 417 aa10.95□□□□□ -0.66
USP54-203ENST00000418501 SALL2Q9Y467 1007 aaPredicted RBP10.95□□□□□ -0.66
USP54-203ENST00000418501 UBR1Q8IWV7 1749 aa10.95□□□□□ -0.66
USP54-203ENST00000418501 CEP170BQ9Y4F5 1589 aaPredicted RBP10.95□□□□□ -0.66
USP54-203ENST00000418501 TULP4Q9NRJ4 1543 aa10.94□□□□□ -0.66
USP54-203ENST00000418501 USP32Q8NFA0 1604 aa10.94□□□□□ -0.66
USP54-203ENST00000418501 CANXP27824 592 aaKnown RBP10.94□□□□□ -0.66
USP54-203ENST00000418501 GGNBP2Q9H3C7 697 aa10.94□□□□□ -0.66
USP54-203ENST00000418501 RCAN3Q9UKA8 241 aa10.94□□□□□ -0.66
USP54-203ENST00000418501 CPS1P31327 1500 aa10.94□□□□□ -0.66
USP54-203ENST00000418501 C3P01024 1663 aa10.94□□□□□ -0.66
USP54-203ENST00000418501 BLMP54132 1417 aaPredicted RBP10.94□□□□□ -0.66
USP54-203ENST00000418501 PLEKHG3A1L390 1219 aa10.93□□□□□ -0.66
USP54-203ENST00000418501 PPM1GO15355 546 aaPredicted RBP10.93□□□□□ -0.66
USP54-203ENST00000418501 ADAMTS13Q76LX8 1427 aa10.93□□□□□ -0.66
USP54-203ENST00000418501 ANKARQ7Z5J8 1434 aa10.93□□□□□ -0.66
USP54-203ENST00000418501 RIMS1Q86UR5 1692 aaKnown RBP10.93□□□□□ -0.66
USP54-203ENST00000418501 NPHP4O75161 1426 aaPredicted RBP10.92□□□□□ -0.66
USP54-203ENST00000418501 KCNA6P17658 529 aa10.92□□□□□ -0.66
USP54-203ENST00000418501 MYO5BQ9ULV0 1848 aa10.92□□□□□ -0.66
USP54-203ENST00000418501 KNDC1Q76NI1 1749 aa10.91□□□□□ -0.66
USP54-203ENST00000418501 FYB1O15117 783 aa10.91□□□□□ -0.66
USP54-203ENST00000418501 PROSER2Q86WR7 435 aaPredicted RBP10.91□□□□□ -0.66
USP54-203ENST00000418501 WDR63Q8IWG1 891 aa10.91□□□□□ -0.66
USP54-203ENST00000418501 SETD1BQ9UPS6 1966 aaKnown RBP10.91□□□□□ -0.66
USP54-203ENST00000418501 FCHSD2O94868 740 aa10.9□□□□□ -0.66
USP54-203ENST00000418501 ATF3P18847 181 aa10.9□□□□□ -0.66
USP54-203ENST00000418501 PSME1Q06323 249 aa10.9□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms