RNA–Protein interactions for RNA: ENST00000417448.1

VCP-202, Transcript of valosin containing protein, humanhuman

TSL 3

Gene VCP, Length 722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-202ENST00000417448 KIF1BO60333 1816 aa27.31■■□□□ 1.96
VCP-202ENST00000417448 CCDC125Q86Z20 511 aa27.3■■□□□ 1.96
VCP-202ENST00000417448 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.29■■□□□ 1.96
VCP-202ENST00000417448 PXDNQ92626 1479 aa27.28■■□□□ 1.96
VCP-202ENST00000417448 PRAG1Q86YV5 1406 aa27.28■■□□□ 1.96
VCP-202ENST00000417448 GLI3P10071 1580 aa27.26■■□□□ 1.96
VCP-202ENST00000417448 BRWD3Q6RI45 1802 aa27.26■■□□□ 1.95
VCP-202ENST00000417448 GJD4Q96KN9 370 aaPredicted RBP27.25■■□□□ 1.95
VCP-202ENST00000417448 BLMP54132 1417 aaPredicted RBP27.22■■□□□ 1.95
VCP-202ENST00000417448 CDC42BPGQ6DT37 1551 aa27.22■■□□□ 1.95
VCP-202ENST00000417448 NPHP3Q7Z494 1330 aa27.2■■□□□ 1.95
VCP-202ENST00000417448 RALGAPBQ86X10 1494 aa27.2■■□□□ 1.95
VCP-202ENST00000417448 LRP5O75197 1615 aa27.2■■□□□ 1.95
VCP-202ENST00000417448 HFM1A2PYH4 1435 aa27.2■■□□□ 1.94
VCP-202ENST00000417448 ITGAEP38570 1179 aa27.2■■□□□ 1.94
VCP-202ENST00000417448 XPCQ01831 940 aaPredicted RBP27.19■■□□□ 1.94
VCP-202ENST00000417448 DEFB132Q7Z7B7 95 aa27.18■■□□□ 1.94
VCP-202ENST00000417448 SLIT2O94813 1529 aa27.17■■□□□ 1.94
VCP-202ENST00000417448 ESCO1Q5FWF5 840 aa27.17■■□□□ 1.94
VCP-202ENST00000417448 PPLO60437 1756 aa27.16■■□□□ 1.94
VCP-202ENST00000417448 FOXO3O43524 673 aa27.15■■□□□ 1.94
VCP-202ENST00000417448 VGFO15240 615 aaPredicted RBP27.12■■□□□ 1.93
VCP-202ENST00000417448 UNC5CLQ8IV45 518 aa27.12■■□□□ 1.93
VCP-202ENST00000417448 USP32Q8NFA0 1604 aa27.12■■□□□ 1.93
VCP-202ENST00000417448 NAIPQ13075 1403 aa27.08■■□□□ 1.93
VCP-202ENST00000417448 RRBP1Q9P2E9 1410 aaKnown RBP27.08■■□□□ 1.93
VCP-202ENST00000417448 PLCH1Q4KWH8 1693 aa27.06■■□□□ 1.92
VCP-202ENST00000417448 NUTM2FA1L443 756 aa27.06■■□□□ 1.92
VCP-202ENST00000417448 LRPPRCP42704 1394 aaKnown RBP27.05■■□□□ 1.92
VCP-202ENST00000417448 FMN2Q9NZ56 1722 aa27.04■■□□□ 1.92
VCP-202ENST00000417448 SEPT12Q8IYM1 358 aa27.04■■□□□ 1.92
VCP-202ENST00000417448 SPATA31A3Q5VYP0 1347 aa27.04■■□□□ 1.92
VCP-202ENST00000417448 KIF1AQ12756 1690 aa27.02■■□□□ 1.92
VCP-202ENST00000417448 RPGRIP1LQ68CZ1 1315 aa27.02■■□□□ 1.92
VCP-202ENST00000417448 ABCA3Q99758 1704 aa27.02■■□□□ 1.92
VCP-202ENST00000417448 NWD2Q9ULI1 1742 aa27.02■■□□□ 1.92
VCP-202ENST00000417448 SF3B2Q13435 895 aaKnown RBP27.01■■□□□ 1.91
VCP-202ENST00000417448 TECPR2O15040 1411 aa27■■□□□ 1.91
VCP-202ENST00000417448 WAPLQ7Z5K2 1190 aa27■■□□□ 1.91
VCP-202ENST00000417448 RGPD8O14715 1765 aaPredicted RBP26.99■■□□□ 1.91
VCP-202ENST00000417448 KNDC1Q76NI1 1749 aa26.99■■□□□ 1.91
VCP-202ENST00000417448 PLEKHH1Q9ULM0 1364 aa26.98■■□□□ 1.91
VCP-202ENST00000417448 PSDA5PKW4 1024 aaPredicted RBP26.98■■□□□ 1.91
VCP-202ENST00000417448 VPS72Q15906 364 aa26.97■■□□□ 1.91
VCP-202ENST00000417448 CCDC144AA2RUR9 1427 aa26.97■■□□□ 1.91
VCP-202ENST00000417448 ONECUT3O60422 494 aaPredicted RBP26.96■■□□□ 1.91
VCP-202ENST00000417448 HRCP23327 699 aa26.95■■□□□ 1.9
VCP-202ENST00000417448 KRT27Q7Z3Y8 459 aa26.94■■□□□ 1.9
VCP-202ENST00000417448 STK26Q9P289 416 aa26.94■■□□□ 1.9
VCP-202ENST00000417448 IFT172Q9UG01 1749 aa26.93■■□□□ 1.9
VCP-202ENST00000417448 TNS3Q68CZ2 1445 aa26.93■■□□□ 1.9
VCP-202ENST00000417448 CABLES1Q8TDN4 633 aa26.93■■□□□ 1.9
VCP-202ENST00000417448 ADGRF5Q8IZF2 1346 aa26.92■■□□□ 1.9
VCP-202ENST00000417448 KRT28Q7Z3Y7 464 aa26.92■■□□□ 1.9
VCP-202ENST00000417448 NRAPQ86VF7 1730 aa26.92■■□□□ 1.9
VCP-202ENST00000417448 ABCC11Q96J66 1382 aa26.88■■□□□ 1.89
VCP-202ENST00000417448 PLEKHG5O94827 1062 aa26.88■■□□□ 1.89
VCP-202ENST00000417448 CCDC9Q9Y3X0 531 aaKnown RBP26.88■■□□□ 1.89
VCP-202ENST00000417448 RGPD1P0DJD0 1748 aa26.87■■□□□ 1.89
VCP-202ENST00000417448 BAG6P46379 1132 aa26.87■■□□□ 1.89
VCP-202ENST00000417448 HAP1P54257 671 aaPredicted RBP26.86■■□□□ 1.89
VCP-202ENST00000417448 TMEM132EQ6IEE7 984 aa26.86■■□□□ 1.89
VCP-202ENST00000417448 TNS1Q9HBL0 1735 aaKnown RBP26.84■■□□□ 1.89
VCP-202ENST00000417448 NRXN1Q9ULB1 1477 aa26.82■■□□□ 1.88
VCP-202ENST00000417448 EN1Q05925 392 aaPredicted RBP26.82■■□□□ 1.88
VCP-202ENST00000417448 PHF8Q9UPP1 1060 aa26.82■■□□□ 1.88
VCP-202ENST00000417448 YTHDC2Q9H6S0 1430 aaKnown RBP26.82■■□□□ 1.88
VCP-202ENST00000417448 FAM83GA6ND36 823 aa26.81■■□□□ 1.88
VCP-202ENST00000417448 SLC4A1APQ9BWU0 796 aaKnown RBP26.81■■□□□ 1.88
VCP-202ENST00000417448 SBNO1A3KN83 1393 aa26.81■■□□□ 1.88
VCP-202ENST00000417448 PIK3C2GO75747 1445 aa26.81■■□□□ 1.88
VCP-202ENST00000417448 SPATA31E1Q6ZUB1 1445 aa26.81■■□□□ 1.88
VCP-202ENST00000417448 A0A0G2JS52 829 aa26.8■■□□□ 1.88
VCP-202ENST00000417448 MYT1Q01538 1121 aa26.8■■□□□ 1.88
VCP-202ENST00000417448 FAM98CQ17RN3 349 aaKnown RBP26.8■■□□□ 1.88
VCP-202ENST00000417448 PSME1Q06323 249 aa26.78■■□□□ 1.88
VCP-202ENST00000417448 R3HDM1Q15032 1099 aaKnown RBP26.78■■□□□ 1.88
VCP-202ENST00000417448 FAM182BQ5T319 152 aa26.78■■□□□ 1.88
VCP-202ENST00000417448 TRPM3Q9HCF6 1732 aaPredicted RBP26.77■■□□□ 1.88
VCP-202ENST00000417448 ARHGEF10O15013 1369 aa26.77■■□□□ 1.88
VCP-202ENST00000417448 LMOD2Q6P5Q4 547 aa26.77■■□□□ 1.88
VCP-202ENST00000417448 THSD7AQ9UPZ6 1657 aa26.76■■□□□ 1.87
VCP-202ENST00000417448 ANKRD30BQ9BXX2 1392 aa26.76■■□□□ 1.87
VCP-202ENST00000417448 RGL3Q3MIN7 710 aa26.76■■□□□ 1.87
VCP-202ENST00000417448 COL14A1Q05707 1796 aaKnown RBP26.76■■□□□ 1.87
VCP-202ENST00000417448 DISP2A7MBM2 1401 aa26.75■■□□□ 1.87
VCP-202ENST00000417448 ALS2Q96Q42 1657 aa26.73■■□□□ 1.87
VCP-202ENST00000417448 BTG4Q9NY30 223 aa26.73■■□□□ 1.87
VCP-202ENST00000417448 CRYBG1Q9Y4K1 1723 aa26.71■■□□□ 1.87
VCP-202ENST00000417448 SIRT1Q96EB6 747 aa26.7■■□□□ 1.86
VCP-202ENST00000417448 EZH2Q15910 746 aaKnown RBP26.69■■□□□ 1.86
VCP-202ENST00000417448 ADGRB2O60241 1585 aa26.68■■□□□ 1.86
VCP-202ENST00000417448 PMFBP1Q8TBY8 1022 aa26.68■■□□□ 1.86
VCP-202ENST00000417448 SPATA31A5Q5VU36 1347 aa26.66■■□□□ 1.86
VCP-202ENST00000417448 SPATA31A7Q8IWB4 1347 aa26.66■■□□□ 1.86
VCP-202ENST00000417448 SAFB2Q14151 953 aaKnown RBP eCLIP26.64■■□□□ 1.86
VCP-202ENST00000417448 ANKARQ7Z5J8 1434 aa26.64■■□□□ 1.85
VCP-202ENST00000417448 RREB1Q92766 1687 aa26.63■■□□□ 1.85
VCP-202ENST00000417448 CAMKK2Q96RR4 588 aa26.63■■□□□ 1.85
VCP-202ENST00000417448 PRAM1Q96QH2 718 aa26.62■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms