RNA–Protein interactions for RNA: ENST00000417285.6

VEGFA-208, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,081 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-208ENST00000417285 TECPR2O15040 1411 aa37.29■■■■□ 3.56
VEGFA-208ENST00000417285 WAPLQ7Z5K2 1190 aa37.28■■■■□ 3.56
VEGFA-208ENST00000417285 SIRT1Q96EB6 747 aa37.28■■■■□ 3.56
VEGFA-208ENST00000417285 IFT172Q9UG01 1749 aa37.26■■■■□ 3.56
VEGFA-208ENST00000417285 SOS2Q07890 1332 aaPredicted RBP37.24■■■■□ 3.55
VEGFA-208ENST00000417285 ESCO1Q5FWF5 840 aa37.22■■■■□ 3.55
VEGFA-208ENST00000417285 YTHDC2Q9H6S0 1430 aaKnown RBP37.21■■■■□ 3.55
VEGFA-208ENST00000417285 PNPLA6Q8IY17 1366 aa37.21■■■■□ 3.55
VEGFA-208ENST00000417285 DHX57Q6P158 1386 aaKnown RBP37.19■■■■□ 3.54
VEGFA-208ENST00000417285 CFAP70Q5T0N1 1121 aa37.19■■■■□ 3.54
VEGFA-208ENST00000417285 NRXN1Q9ULB1 1477 aa37.19■■■■□ 3.54
VEGFA-208ENST00000417285 MYOM2P54296 1465 aa37.18■■■■□ 3.54
VEGFA-208ENST00000417285 CDC42BPGQ6DT37 1551 aa37.17■■■■□ 3.54
VEGFA-208ENST00000417285 NPHP3Q7Z494 1330 aa37.16■■■■□ 3.54
VEGFA-208ENST00000417285 STAC3Q96MF2 364 aa37.16■■■■□ 3.54
VEGFA-208ENST00000417285 LAMC1P11047 1609 aa37.15■■■■□ 3.54
VEGFA-208ENST00000417285 PLEKHH1Q9ULM0 1364 aa37.13■■■■□ 3.53
VEGFA-208ENST00000417285 AFF2P51816 1311 aa37.11■■■■□ 3.53
VEGFA-208ENST00000417285 RXRBP28702 533 aa37.11■■■■□ 3.53
VEGFA-208ENST00000417285 FOXO3O43524 673 aa37.09■■■■□ 3.53
VEGFA-208ENST00000417285 C8orf37Q96NL8 207 aa37.08■■■■□ 3.53
VEGFA-208ENST00000417285 KNDC1Q76NI1 1749 aa37.07■■■■□ 3.53
VEGFA-208ENST00000417285 NUTM2FA1L443 756 aa37.07■■■■□ 3.52
VEGFA-208ENST00000417285 DCAF11Q8TEB1 546 aa37.07■■■■□ 3.52
VEGFA-208ENST00000417285 KDM2AQ9Y2K7 1162 aa37.05■■■■□ 3.52
VEGFA-208ENST00000417285 ADAMTS2O95450 1211 aa37.04■■■■□ 3.52
VEGFA-208ENST00000417285 NGLY1Q96IV0 654 aa37.04■■■■□ 3.52
VEGFA-208ENST00000417285 PRAM1Q96QH2 718 aa37.03■■■■□ 3.52
VEGFA-208ENST00000417285 POGKQ9P215 609 aa37.02■■■■□ 3.52
VEGFA-208ENST00000417285 QTRT2Q9H974 415 aaKnown RBP37.01■■■■□ 3.52
VEGFA-208ENST00000417285 PXDNQ92626 1479 aa36.96■■■■□ 3.51
VEGFA-208ENST00000417285 XPCQ01831 940 aaPredicted RBP36.96■■■■□ 3.51
VEGFA-208ENST00000417285 SAFB2Q14151 953 aaKnown RBP eCLIP36.95■■■■□ 3.51
VEGFA-208ENST00000417285 RBM6P78332 1123 aaKnown RBP36.94■■■■□ 3.5
VEGFA-208ENST00000417285 DLC1Q96QB1 1528 aa36.93■■■■□ 3.5
VEGFA-208ENST00000417285 CDK12Q9NYV4 1490 aaPredicted RBP36.93■■■■□ 3.5
VEGFA-208ENST00000417285 PHF8Q9UPP1 1060 aa36.92■■■■□ 3.5
VEGFA-208ENST00000417285 TRAK1Q9UPV9 953 aa36.92■■■■□ 3.5
VEGFA-208ENST00000417285 KRT28Q7Z3Y7 464 aa36.91■■■■□ 3.5
VEGFA-208ENST00000417285 FNBP4Q8N3X1 1017 aaPredicted RBP36.91■■■■□ 3.5
VEGFA-208ENST00000417285 FMN2Q9NZ56 1722 aa36.9■■■■□ 3.5
VEGFA-208ENST00000417285 PSME1Q06323 249 aa36.89■■■■□ 3.5
VEGFA-208ENST00000417285 USP21Q9UK80 565 aa36.89■■■■□ 3.5
VEGFA-208ENST00000417285 ADGRB1O14514 1584 aa36.88■■■■□ 3.49
VEGFA-208ENST00000417285 COL22A1Q8NFW1 1626 aaPredicted RBP36.88■■■■□ 3.49
VEGFA-208ENST00000417285 SPATA31A3Q5VYP0 1347 aa36.87■■■■□ 3.49
VEGFA-208ENST00000417285 TRPC5Q9UL62 973 aaPredicted RBP36.84■■■■□ 3.49
VEGFA-208ENST00000417285 KIF1AQ12756 1690 aa36.83■■■■□ 3.49
VEGFA-208ENST00000417285 UPF1Q92900 1129 aaKnown RBP eCLIP36.81■■■■□ 3.48
VEGFA-208ENST00000417285 ANKARQ7Z5J8 1434 aa36.8■■■■□ 3.48
VEGFA-208ENST00000417285 HIRIP3Q9BW71 556 aaPredicted RBP36.78■■■■□ 3.48
VEGFA-208ENST00000417285 EIF3AQ14152 1382 aaKnown RBP36.78■■■■□ 3.48
VEGFA-208ENST00000417285 MINK1Q8N4C8 1332 aaPredicted RBP36.77■■■■□ 3.48
VEGFA-208ENST00000417285 WASLO00401 505 aaPredicted RBP36.75■■■■□ 3.47
VEGFA-208ENST00000417285 SBNO1A3KN83 1393 aa36.75■■■■□ 3.47
VEGFA-208ENST00000417285 PMFBP1Q8TBY8 1022 aa36.73■■■■□ 3.47
VEGFA-208ENST00000417285 ADGRB2O60241 1585 aa36.72■■■■□ 3.47
VEGFA-208ENST00000417285 TNS3Q68CZ2 1445 aa36.7■■■■□ 3.47
VEGFA-208ENST00000417285 RGS12O14924 1447 aa36.69■■■■□ 3.46
VEGFA-208ENST00000417285 ATRNO75882 1429 aa36.69■■■■□ 3.46
VEGFA-208ENST00000417285 HAP1P54257 671 aaPredicted RBP36.69■■■■□ 3.46
VEGFA-208ENST00000417285 ARHGEF10O15013 1369 aa36.68■■■■□ 3.46
VEGFA-208ENST00000417285 RGPD8O14715 1765 aaPredicted RBP36.68■■■■□ 3.46
VEGFA-208ENST00000417285 BCL9LQ86UU0 1499 aa36.68■■■■□ 3.46
VEGFA-208ENST00000417285 LMOD2Q6P5Q4 547 aa36.67■■■■□ 3.46
VEGFA-208ENST00000417285 GPRASP1Q5JY77 1395 aa36.65■■■■□ 3.46
VEGFA-208ENST00000417285 PRR36Q9H6K5 1346 aa36.63■■■■□ 3.45
VEGFA-208ENST00000417285 UNC5CLQ8IV45 518 aa36.63■■■■□ 3.45
VEGFA-208ENST00000417285 GJD4Q96KN9 370 aaPredicted RBP36.62■■■■□ 3.45
VEGFA-208ENST00000417285 CABLES1Q8TDN4 633 aa36.61■■■■□ 3.45
VEGFA-208ENST00000417285 TULP4Q9NRJ4 1543 aa36.6■■■■□ 3.45
VEGFA-208ENST00000417285 USP32Q8NFA0 1604 aa36.6■■■■□ 3.45
VEGFA-208ENST00000417285 NGDNQ8NEJ9 315 aaKnown RBP36.6■■■■□ 3.45
VEGFA-208ENST00000417285 NUDT16Q96DE0 195 aaKnown RBP36.58■■■■□ 3.45
VEGFA-208ENST00000417285 MARF1Q9Y4F3 1742 aaKnown RBP36.58■■■■□ 3.45
VEGFA-208ENST00000417285 SLIT2O94813 1529 aa36.56■■■■□ 3.44
VEGFA-208ENST00000417285 NBPF1Q3BBV0 1214 aa36.56■■■■□ 3.44
VEGFA-208ENST00000417285 CDK19Q9BWU1 502 aa36.56■■■■□ 3.44
VEGFA-208ENST00000417285 ATAD2Q6PL18 1390 aa36.54■■■■□ 3.44
VEGFA-208ENST00000417285 PLEKHG5O94827 1062 aa36.53■■■■□ 3.44
VEGFA-208ENST00000417285 KIAA1210Q9ULL0 1709 aa36.53■■■■□ 3.44
VEGFA-208ENST00000417285 L3MBTL2Q969R5 705 aa36.51■■■■□ 3.44
VEGFA-208ENST00000417285 ARHGEF28Q8N1W1 1705 aaKnown RBP36.49■■■■□ 3.43
VEGFA-208ENST00000417285 PAK3O75914 559 aaPredicted RBP36.48■■■■□ 3.43
VEGFA-208ENST00000417285 CCDC61Q9Y6R9 512 aa36.48■■■■□ 3.43
VEGFA-208ENST00000417285 FAM83GA6ND36 823 aa36.47■■■■□ 3.43
VEGFA-208ENST00000417285 VPS72Q15906 364 aa36.47■■■■□ 3.43
VEGFA-208ENST00000417285 SIN3AQ96ST3 1273 aa36.45■■■■□ 3.43
VEGFA-208ENST00000417285 ATP7BP35670 1465 aa36.43■■■■□ 3.42
VEGFA-208ENST00000417285 TNKS1BP1Q9C0C2 1729 aaKnown RBP36.43■■■■□ 3.42
VEGFA-208ENST00000417285 RALGAPBQ86X10 1494 aa36.43■■■■□ 3.42
VEGFA-208ENST00000417285 CENPJQ9HC77 1338 aaPredicted RBP36.42■■■■□ 3.42
VEGFA-208ENST00000417285 PLEKHG3A1L390 1219 aa36.42■■■■□ 3.42
VEGFA-208ENST00000417285 TRPM3Q9HCF6 1732 aaPredicted RBP36.4■■■■□ 3.42
VEGFA-208ENST00000417285 NEUROD1Q13562 356 aa36.4■■■■□ 3.42
VEGFA-208ENST00000417285 CCDC125Q86Z20 511 aa36.4■■■■□ 3.42
VEGFA-208ENST00000417285 NBPF8Q3BBV2 869 aa36.39■■■■□ 3.42
VEGFA-208ENST00000417285 ONECUT3O60422 494 aaPredicted RBP36.38■■■■□ 3.41
VEGFA-208ENST00000417285 CCDC9Q9Y3X0 531 aaKnown RBP36.38■■■■□ 3.41
VEGFA-208ENST00000417285 ACEP12821 1306 aa36.37■■■■□ 3.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms