RNA–Protein interactions for RNA: ENST00000414700.7

SHMT2-202, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 2,006 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-202ENST00000414700 XRN1Q8IZH2 1706 aaKnown RBP21.57■■□□□ 1.04
SHMT2-202ENST00000414700 MINK1Q8N4C8 1332 aaPredicted RBP21.55■■□□□ 1.04
SHMT2-202ENST00000414700 KCNA6P17658 529 aa21.54■■□□□ 1.04
SHMT2-202ENST00000414700 PIK3R4Q99570 1358 aa21.54■■□□□ 1.04
SHMT2-202ENST00000414700 TULP4Q9NRJ4 1543 aa21.54■■□□□ 1.04
SHMT2-202ENST00000414700 FAM135BQ49AJ0 1406 aa21.53■■□□□ 1.04
SHMT2-202ENST00000414700 SIRT1Q96EB6 747 aa21.5■■□□□ 1.03
SHMT2-202ENST00000414700 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.5■■□□□ 1.03
SHMT2-202ENST00000414700 PTCH1Q13635 1447 aa21.5■■□□□ 1.03
SHMT2-202ENST00000414700 RBM33Q96EV2 1170 aaKnown RBP21.47■■□□□ 1.03
SHMT2-202ENST00000414700 MYOM1P52179 1685 aa21.47■■□□□ 1.03
SHMT2-202ENST00000414700 EVC2Q86UK5 1308 aa21.47■■□□□ 1.03
SHMT2-202ENST00000414700 STRCP1A6NGW2 1772 aa21.46■■□□□ 1.03
SHMT2-202ENST00000414700 SLC24A1O60721 1099 aa21.46■■□□□ 1.03
SHMT2-202ENST00000414700 CABP2Q9NPB3 220 aa21.46■■□□□ 1.03
SHMT2-202ENST00000414700 NWD1Q149M9 1564 aa21.45■■□□□ 1.02
SHMT2-202ENST00000414700 CDCA8Q53HL2 280 aa21.45■■□□□ 1.02
SHMT2-202ENST00000414700 CDK19Q9BWU1 502 aa21.43■■□□□ 1.02
SHMT2-202ENST00000414700 SRPK2P78362 688 aaKnown RBP21.42■■□□□ 1.02
SHMT2-202ENST00000414700 ADGRB2O60241 1585 aa21.4■■□□□ 1.02
SHMT2-202ENST00000414700 WASLO00401 505 aaPredicted RBP21.39■■□□□ 1.02
SHMT2-202ENST00000414700 NALCNQ8IZF0 1738 aa21.39■■□□□ 1.02
SHMT2-202ENST00000414700 SLC12A5Q9H2X9 1139 aa21.38■■□□□ 1.01
SHMT2-202ENST00000414700 PANK3Q9H999 370 aa21.38■■□□□ 1.01
SHMT2-202ENST00000414700 TMC1Q8TDI8 760 aa21.36■■□□□ 1.01
SHMT2-202ENST00000414700 ZNF335Q9H4Z2 1342 aaPredicted RBP21.36■■□□□ 1.01
SHMT2-202ENST00000414700 NUTM2FA1L443 756 aa21.36■■□□□ 1.01
SHMT2-202ENST00000414700 MIER1Q8N108 512 aa21.36■■□□□ 1.01
SHMT2-202ENST00000414700 NKTRP30414 1462 aaKnown RBP21.35■■□□□ 1.01
SHMT2-202ENST00000414700 PUS7Q96PZ0 661 aaKnown RBP21.35■■□□□ 1.01
SHMT2-202ENST00000414700 PROSER2Q86WR7 435 aaPredicted RBP21.34■■□□□ 1.01
SHMT2-202ENST00000414700 YTHDC1Q96MU7 727 aaKnown RBP21.34■■□□□ 1.01
SHMT2-202ENST00000414700 PRR36Q9H6K5 1346 aa21.33■■□□□ 1.01
SHMT2-202ENST00000414700 ATAD2Q6PL18 1390 aa21.33■■□□□ 1
SHMT2-202ENST00000414700 PER1O15534 1290 aaPredicted RBP21.33■■□□□ 1
SHMT2-202ENST00000414700 RGPD8O14715 1765 aaPredicted RBP21.32■■□□□ 1
SHMT2-202ENST00000414700 CNGB1Q14028 1251 aaPredicted RBP21.32■■□□□ 1
SHMT2-202ENST00000414700 ATP7BP35670 1465 aa21.32■■□□□ 1
SHMT2-202ENST00000414700 ADGRL3Q9HAR2 1447 aa21.31■■□□□ 1
SHMT2-202ENST00000414700 USP32Q8NFA0 1604 aa21.31■■□□□ 1
SHMT2-202ENST00000414700 NUDT16Q96DE0 195 aaKnown RBP21.31■■□□□ 1
SHMT2-202ENST00000414700 DMRT2Q9Y5R5 561 aa21.31■■□□□ 1
SHMT2-202ENST00000414700 AEBP2Q6ZN18 517 aaPredicted RBP21.3■■□□□ 1
SHMT2-202ENST00000414700 CABP1Q9NZU7 370 aa21.3■■□□□ 1
SHMT2-202ENST00000414700 TMEM94Q12767 1356 aa21.3■■□□□ 1
SHMT2-202ENST00000414700 C14orf37Q86TY3 774 aa21.29■■□□□ 1
SHMT2-202ENST00000414700 XIRP1Q702N8 1843 aaKnown RBP21.29■■□□□ 1
SHMT2-202ENST00000414700 CARD14Q9BXL6 1004 aa21.29■■□□□ 1
SHMT2-202ENST00000414700 FMN2Q9NZ56 1722 aa21.28■■□□□ 1
SHMT2-202ENST00000414700 CD163L1Q9NR16 1453 aa21.28■■□□□ 1
SHMT2-202ENST00000414700 CDC42BPGQ6DT37 1551 aa21.28■■□□□ 1
SHMT2-202ENST00000414700 PPIP5K1Q6PFW1 1433 aa21.27■■□□□ 1
SHMT2-202ENST00000414700 TOPAZ1Q8N9V7 1692 aa21.26■□□□□ 0.99
SHMT2-202ENST00000414700 A0A1W2PP64 1363 aa21.26■□□□□ 0.99
SHMT2-202ENST00000414700 CCDC61Q9Y6R9 512 aa21.26■□□□□ 0.99
SHMT2-202ENST00000414700 LRRC7Q96NW7 1537 aa21.25■□□□□ 0.99
SHMT2-202ENST00000414700 ANKRD36BQ8N2N9 1353 aa21.25■□□□□ 0.99
SHMT2-202ENST00000414700 NINLQ9Y2I6 1382 aa21.25■□□□□ 0.99
SHMT2-202ENST00000414700 ANP32CO43423 234 aa21.24■□□□□ 0.99
SHMT2-202ENST00000414700 NSD3Q9BZ95 1437 aa21.22■□□□□ 0.99
SHMT2-202ENST00000414700 PRKRIP1Q9H875 184 aaPredicted RBP21.22■□□□□ 0.99
SHMT2-202ENST00000414700 KNSTRNQ9Y448 316 aa21.22■□□□□ 0.99
SHMT2-202ENST00000414700 C19orf44Q9H6X5 657 aa21.21■□□□□ 0.99
SHMT2-202ENST00000414700 CC2D1BQ5T0F9 858 aaKnown RBP21.21■□□□□ 0.99
SHMT2-202ENST00000414700 ITSN1Q15811 1721 aa21.2■□□□□ 0.98
SHMT2-202ENST00000414700 AMER1Q5JTC6 1135 aaPredicted RBP21.2■□□□□ 0.98
SHMT2-202ENST00000414700 PMFBP1Q8TBY8 1022 aa21.19■□□□□ 0.98
SHMT2-202ENST00000414700 ANKARQ7Z5J8 1434 aa21.19■□□□□ 0.98
SHMT2-202ENST00000414700 TERF2IPQ9NYB0 399 aa21.19■□□□□ 0.98
SHMT2-202ENST00000414700 CPSF1Q10570 1443 aaKnown RBP21.18■□□□□ 0.98
SHMT2-202ENST00000414700 NCOA3Q9Y6Q9 1424 aa21.18■□□□□ 0.98
SHMT2-202ENST00000414700 AKAP12Q02952 1782 aa21.18■□□□□ 0.98
SHMT2-202ENST00000414700 ACEP12821 1306 aa21.16■□□□□ 0.98
SHMT2-202ENST00000414700 PLEKHG3A1L390 1219 aa21.16■□□□□ 0.98
SHMT2-202ENST00000414700 HDGFL2Q7Z4V5 671 aaPredicted RBP21.16■□□□□ 0.98
SHMT2-202ENST00000414700 MON2Q7Z3U7 1717 aa21.15■□□□□ 0.98
SHMT2-202ENST00000414700 KTN1Q86UP2 1357 aaKnown RBP21.15■□□□□ 0.98
SHMT2-202ENST00000414700 LTBP4Q8N2S1 1624 aa21.14■□□□□ 0.98
SHMT2-202ENST00000414700 MSH6P52701 1360 aa21.14■□□□□ 0.97
SHMT2-202ENST00000414700 DCCP43146 1447 aa21.14■□□□□ 0.97
SHMT2-202ENST00000414700 ATF3P18847 181 aa21.14■□□□□ 0.97
SHMT2-202ENST00000414700 ORAI2Q96SN7 254 aa21.13■□□□□ 0.97
SHMT2-202ENST00000414700 MST1RQ04912 1400 aa21.13■□□□□ 0.97
SHMT2-202ENST00000414700 ESCO1Q5FWF5 840 aa21.12■□□□□ 0.97
SHMT2-202ENST00000414700 PARD3Q8TEW0 1356 aa21.12■□□□□ 0.97
SHMT2-202ENST00000414700 C1orf167Q5SNV9 1468 aa21.12■□□□□ 0.97
SHMT2-202ENST00000414700 POLR3AO14802 1390 aaPredicted RBP21.11■□□□□ 0.97
SHMT2-202ENST00000414700 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.11■□□□□ 0.97
SHMT2-202ENST00000414700 NGDNQ8NEJ9 315 aaKnown RBP21.11■□□□□ 0.97
SHMT2-202ENST00000414700 CGNL1Q0VF96 1302 aa21.1■□□□□ 0.97
SHMT2-202ENST00000414700 NPC1L1Q9UHC9 1359 aa21.1■□□□□ 0.97
SHMT2-202ENST00000414700 CADPS2Q86UW7 1296 aa21.1■□□□□ 0.97
SHMT2-202ENST00000414700 PHF8Q9UPP1 1060 aa21.1■□□□□ 0.97
SHMT2-202ENST00000414700 NRKQ7Z2Y5 1582 aa21.1■□□□□ 0.97
SHMT2-202ENST00000414700 CCDC184Q52MB2 194 aa21.09■□□□□ 0.97
SHMT2-202ENST00000414700 USP6P35125 1406 aa21.09■□□□□ 0.97
SHMT2-202ENST00000414700 EDC4Q6P2E9 1401 aaKnown RBP21.09■□□□□ 0.97
SHMT2-202ENST00000414700 FYB1O15117 783 aa21.08■□□□□ 0.97
SHMT2-202ENST00000414700 ZNF692Q9BU19 519 aaPredicted RBP21.08■□□□□ 0.97
SHMT2-202ENST00000414700 GGNBP2Q9H3C7 697 aa21.08■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 109.4 ms