RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 SMG6Q86US8 1419 aaKnown RBP14.02□□□□□ -0.16
PTPRF-204ENST00000412568 TARBP1Q13395 1621 aaKnown RBP14.02□□□□□ -0.16
PTPRF-204ENST00000412568 USP35Q9P2H5 1018 aa14.02□□□□□ -0.17
PTPRF-204ENST00000412568 C1orf141Q5JVX7 400 aa14.02□□□□□ -0.17
PTPRF-204ENST00000412568 FGD1P98174 961 aa14.01□□□□□ -0.17
PTPRF-204ENST00000412568 FAM161AQ3B820 660 aa14.01□□□□□ -0.17
PTPRF-204ENST00000412568 NME9Q86XW9 330 aa14.01□□□□□ -0.17
PTPRF-204ENST00000412568 LNPKQ9C0E8 428 aa14.01□□□□□ -0.17
PTPRF-204ENST00000412568 NLRP2Q9NX02 1062 aa14.01□□□□□ -0.17
PTPRF-204ENST00000412568 CCDC61Q9Y6R9 512 aa14.01□□□□□ -0.17
PTPRF-204ENST00000412568 NOL8Q76FK4 1167 aaKnown RBP14.01□□□□□ -0.17
PTPRF-204ENST00000412568 FKBP5Q13451 457 aaPredicted RBP14.01□□□□□ -0.17
PTPRF-204ENST00000412568 KDM5BQ9UGL1 1544 aa14□□□□□ -0.17
PTPRF-204ENST00000412568 CEP170Q5SW79 1584 aa14□□□□□ -0.17
PTPRF-204ENST00000412568 ATF3P18847 181 aa14□□□□□ -0.17
PTPRF-204ENST00000412568 GOLGA6L22H0YM25 854 aa14□□□□□ -0.17
PTPRF-204ENST00000412568 C20orf194Q5TEA3 1177 aa14□□□□□ -0.17
PTPRF-204ENST00000412568 PBRM1Q86U86 1689 aa14□□□□□ -0.17
PTPRF-204ENST00000412568 C14orf93Q9H972 538 aaKnown RBP14□□□□□ -0.17
PTPRF-204ENST00000412568 C1orf115Q9H7X2 142 aa13.99□□□□□ -0.17
PTPRF-204ENST00000412568 EVA1CP58658 441 aa13.99□□□□□ -0.17
PTPRF-204ENST00000412568 GNAI1P63096 354 aa13.99□□□□□ -0.17
PTPRF-204ENST00000412568 DCTN1Q14203 1278 aa13.98□□□□□ -0.17
PTPRF-204ENST00000412568 EMILIN1Q9Y6C2 1016 aa13.98□□□□□ -0.17
PTPRF-204ENST00000412568 WDR7Q9Y4E6 1490 aa13.98□□□□□ -0.17
PTPRF-204ENST00000412568 TESK2Q96S53 571 aa13.98□□□□□ -0.17
PTPRF-204ENST00000412568 GZF1Q9H116 711 aaPredicted RBP13.98□□□□□ -0.17
PTPRF-204ENST00000412568 WWC1Q8IX03 1113 aa13.98□□□□□ -0.17
PTPRF-204ENST00000412568 DDX19BQ9UMR2 479 aa13.98□□□□□ -0.17
PTPRF-204ENST00000412568 HMMRO75330 724 aa13.97□□□□□ -0.17
PTPRF-204ENST00000412568 PZPP20742 1482 aa13.97□□□□□ -0.17
PTPRF-204ENST00000412568 FAM135AQ9P2D6 1515 aa13.97□□□□□ -0.17
PTPRF-204ENST00000412568 SYTL4Q96C24 671 aaPredicted RBP13.96□□□□□ -0.17
PTPRF-204ENST00000412568 SAMD9Q5K651 1589 aa13.96□□□□□ -0.17
PTPRF-204ENST00000412568 ANKLE2Q86XL3 938 aa13.96□□□□□ -0.17
PTPRF-204ENST00000412568 MIS18AQ9NYP9 233 aa13.96□□□□□ -0.17
PTPRF-204ENST00000412568 AIMP1Q12904 312 aaKnown RBP13.96□□□□□ -0.18
PTPRF-204ENST00000412568 RILPL2Q969X0 211 aa13.95□□□□□ -0.18
PTPRF-204ENST00000412568 AMOTL2Q9Y2J4 779 aa13.95□□□□□ -0.18
PTPRF-204ENST00000412568 NOB1Q9ULX3 412 aaKnown RBP13.95□□□□□ -0.18
PTPRF-204ENST00000412568 A2MP01023 1474 aa13.94□□□□□ -0.18
PTPRF-204ENST00000412568 ATAD2Q6PL18 1390 aa13.94□□□□□ -0.18
PTPRF-204ENST00000412568 TWISTNBQ3B726 338 aaPredicted RBP13.94□□□□□ -0.18
PTPRF-204ENST00000412568 PRAG1Q86YV5 1406 aa13.94□□□□□ -0.18
PTPRF-204ENST00000412568 TMPOP42166 694 aaKnown RBP13.93□□□□□ -0.18
PTPRF-204ENST00000412568 ZNF692Q9BU19 519 aaPredicted RBP13.93□□□□□ -0.18
PTPRF-204ENST00000412568 ZC3H6P61129 1189 aaKnown RBP13.93□□□□□ -0.18
PTPRF-204ENST00000412568 SLFN5Q08AF3 891 aa13.93□□□□□ -0.18
PTPRF-204ENST00000412568 KIAA1211Q6ZU35 1233 aa13.93□□□□□ -0.18
PTPRF-204ENST00000412568 RAPGEF4Q8WZA2 1011 aa13.93□□□□□ -0.18
PTPRF-204ENST00000412568 SCAF11Q99590 1463 aaKnown RBP13.93□□□□□ -0.18
PTPRF-204ENST00000412568 FOXO3O43524 673 aa13.93□□□□□ -0.18
PTPRF-204ENST00000412568 AMER1Q5JTC6 1135 aaPredicted RBP13.93□□□□□ -0.18
PTPRF-204ENST00000412568 API5Q9BZZ5 524 aaKnown RBP13.93□□□□□ -0.18
PTPRF-204ENST00000412568 NCKAP5LQ9HCH0 1330 aa13.92□□□□□ -0.18
PTPRF-204ENST00000412568 KIF16BQ96L93 1317 aa13.92□□□□□ -0.18
PTPRF-204ENST00000412568 C9orf78Q9NZ63 289 aaPredicted RBP13.92□□□□□ -0.18
PTPRF-204ENST00000412568 WASLO00401 505 aaPredicted RBP13.91□□□□□ -0.18
PTPRF-204ENST00000412568 PLCB2Q00722 1185 aa13.91□□□□□ -0.18
PTPRF-204ENST00000412568 FOXD4L5Q5VV16 416 aaPredicted RBP13.91□□□□□ -0.18
PTPRF-204ENST00000412568 FOXD4L4Q8WXT5 416 aaPredicted RBP13.91□□□□□ -0.18
PTPRF-204ENST00000412568 ABCC2Q92887 1545 aa13.91□□□□□ -0.18
PTPRF-204ENST00000412568 DUOX2Q9NRD8 1548 aa13.91□□□□□ -0.18
PTPRF-204ENST00000412568 MCM10Q7L590 875 aa13.91□□□□□ -0.18
PTPRF-204ENST00000412568 TTC5Q8N0Z6 440 aa13.91□□□□□ -0.18
PTPRF-204ENST00000412568 ZRANB1Q9UGI0 708 aa13.91□□□□□ -0.18
PTPRF-204ENST00000412568 ITSN2Q9NZM3 1697 aa13.91□□□□□ -0.18
PTPRF-204ENST00000412568 USHBP1Q8N6Y0 703 aa13.9□□□□□ -0.18
PTPRF-204ENST00000412568 MCCP23508 829 aa13.9□□□□□ -0.18
PTPRF-204ENST00000412568 CARD14Q9BXL6 1004 aa13.9□□□□□ -0.18
PTPRF-204ENST00000412568 GPRASP1Q5JY77 1395 aa13.9□□□□□ -0.18
PTPRF-204ENST00000412568 TAF7LQ5H9L4 462 aa13.9□□□□□ -0.19
PTPRF-204ENST00000412568 GORABQ5T7V8 394 aa13.9□□□□□ -0.19
PTPRF-204ENST00000412568 STRN4Q9NRL3 753 aa13.89□□□□□ -0.19
PTPRF-204ENST00000412568 SLC4A2P04920 1241 aa13.89□□□□□ -0.19
PTPRF-204ENST00000412568 ZNF518AQ6AHZ1 1483 aa13.88□□□□□ -0.19
PTPRF-204ENST00000412568 PDZRN3Q9UPQ7 1066 aa13.88□□□□□ -0.19
PTPRF-204ENST00000412568 RALGAPBQ86X10 1494 aa13.87□□□□□ -0.19
PTPRF-204ENST00000412568 CFAP65Q6ZU64 1925 aaKnown RBP13.87□□□□□ -0.19
PTPRF-204ENST00000412568 DNMT1P26358 1616 aaKnown RBP13.87□□□□□ -0.19
PTPRF-204ENST00000412568 MSH5O43196 834 aa13.87□□□□□ -0.19
PTPRF-204ENST00000412568 PER1O15534 1290 aaPredicted RBP13.87□□□□□ -0.19
PTPRF-204ENST00000412568 PTMAP06454 111 aaKnown RBP13.87□□□□□ -0.19
PTPRF-204ENST00000412568 FOXD4L6Q3SYB3 417 aaPredicted RBP13.87□□□□□ -0.19
PTPRF-204ENST00000412568 FOXD4L3Q6VB84 417 aaPredicted RBP13.87□□□□□ -0.19
PTPRF-204ENST00000412568 CHMP4AQ9BY43 222 aa13.87□□□□□ -0.19
PTPRF-204ENST00000412568 FYB1O15117 783 aa13.86□□□□□ -0.19
PTPRF-204ENST00000412568 FCHSD2O94868 740 aa13.86□□□□□ -0.19
PTPRF-204ENST00000412568 WDR63Q8IWG1 891 aa13.86□□□□□ -0.19
PTPRF-204ENST00000412568 BACH2Q9BYV9 841 aa13.86□□□□□ -0.19
PTPRF-204ENST00000412568 KDM6BO15054 1643 aa13.86□□□□□ -0.19
PTPRF-204ENST00000412568 DUSP27Q5VZP5 1158 aa13.86□□□□□ -0.19
PTPRF-204ENST00000412568 DNTTIP2Q5QJE6 756 aaKnown RBP13.86□□□□□ -0.19
PTPRF-204ENST00000412568 FAM83GA6ND36 823 aa13.86□□□□□ -0.19
PTPRF-204ENST00000412568 POGZQ7Z3K3 1410 aa13.85□□□□□ -0.19
PTPRF-204ENST00000412568 ATF7IPQ6VMQ6 1270 aa13.85□□□□□ -0.19
PTPRF-204ENST00000412568 PDE3AQ14432 1141 aa13.85□□□□□ -0.19
PTPRF-204ENST00000412568 SSH1Q8WYL5 1049 aa13.85□□□□□ -0.19
PTPRF-204ENST00000412568 ZNF530Q6P9A1 599 aaPredicted RBP13.85□□□□□ -0.19
PTPRF-204ENST00000412568 GAS2L2Q8NHY3 880 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms