RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 NKTRP30414 1462 aaKnown RBP18.74■□□□□ 0.59
LIMS1-204ENST00000409441 HIRIP3Q9BW71 556 aaPredicted RBP18.74■□□□□ 0.59
LIMS1-204ENST00000409441 C14orf37Q86TY3 774 aa18.73■□□□□ 0.59
LIMS1-204ENST00000409441 TMEM94Q12767 1356 aa18.73■□□□□ 0.59
LIMS1-204ENST00000409441 CPS1P31327 1500 aa18.72■□□□□ 0.59
LIMS1-204ENST00000409441 MINK1Q8N4C8 1332 aaPredicted RBP18.71■□□□□ 0.59
LIMS1-204ENST00000409441 KNDC1Q76NI1 1749 aa18.71■□□□□ 0.59
LIMS1-204ENST00000409441 LTBP4Q8N2S1 1624 aa18.7■□□□□ 0.58
LIMS1-204ENST00000409441 LRRC7Q96NW7 1537 aa18.7■□□□□ 0.58
LIMS1-204ENST00000409441 TESK2Q96S53 571 aa18.7■□□□□ 0.58
LIMS1-204ENST00000409441 ARHGEF28Q8N1W1 1705 aaKnown RBP18.69■□□□□ 0.58
LIMS1-204ENST00000409441 C19orf44Q9H6X5 657 aa18.69■□□□□ 0.58
LIMS1-204ENST00000409441 NCOA3Q9Y6Q9 1424 aa18.68■□□□□ 0.58
LIMS1-204ENST00000409441 SLC24A1O60721 1099 aa18.67■□□□□ 0.58
LIMS1-204ENST00000409441 WASLO00401 505 aaPredicted RBP18.64■□□□□ 0.57
LIMS1-204ENST00000409441 CDK19Q9BWU1 502 aa18.64■□□□□ 0.57
LIMS1-204ENST00000409441 SBNO2Q9Y2G9 1366 aa18.64■□□□□ 0.57
LIMS1-204ENST00000409441 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.64■□□□□ 0.57
LIMS1-204ENST00000409441 TMF1P82094 1093 aa18.63■□□□□ 0.57
LIMS1-204ENST00000409441 EVC2Q86UK5 1308 aa18.63■□□□□ 0.57
LIMS1-204ENST00000409441 ADGRL3Q9HAR2 1447 aa18.63■□□□□ 0.57
LIMS1-204ENST00000409441 ATF3P18847 181 aa18.63■□□□□ 0.57
LIMS1-204ENST00000409441 MSH6P52701 1360 aa18.63■□□□□ 0.57
LIMS1-204ENST00000409441 CERKQ8TCT0 537 aa18.62■□□□□ 0.57
LIMS1-204ENST00000409441 SCAF1Q9H7N4 1312 aaKnown RBP18.62■□□□□ 0.57
LIMS1-204ENST00000409441 QRICH2Q9H0J4 1663 aa18.61■□□□□ 0.57
LIMS1-204ENST00000409441 SRPK2P78362 688 aaKnown RBP18.6■□□□□ 0.57
LIMS1-204ENST00000409441 CADPS2Q86UW7 1296 aa18.6■□□□□ 0.57
LIMS1-204ENST00000409441 CABP2Q9NPB3 220 aa18.6■□□□□ 0.57
LIMS1-204ENST00000409441 NUTM2FA1L443 756 aa18.6■□□□□ 0.57
LIMS1-204ENST00000409441 C11orf95C9JLR9 678 aaPredicted RBP18.6■□□□□ 0.57
LIMS1-204ENST00000409441 XIRP1Q702N8 1843 aaKnown RBP18.58■□□□□ 0.57
LIMS1-204ENST00000409441 DISP3Q9P2K9 1392 aa18.58■□□□□ 0.57
LIMS1-204ENST00000409441 CDCA8Q53HL2 280 aa18.57■□□□□ 0.56
LIMS1-204ENST00000409441 NALCNQ8IZF0 1738 aa18.56■□□□□ 0.56
LIMS1-204ENST00000409441 NUDT16Q96DE0 195 aaKnown RBP18.56■□□□□ 0.56
LIMS1-204ENST00000409441 PUS7Q96PZ0 661 aaKnown RBP18.56■□□□□ 0.56
LIMS1-204ENST00000409441 SLAIN2Q9P270 581 aa18.56■□□□□ 0.56
LIMS1-204ENST00000409441 DCCP43146 1447 aa18.55■□□□□ 0.56
LIMS1-204ENST00000409441 TULP4Q9NRJ4 1543 aa18.55■□□□□ 0.56
LIMS1-204ENST00000409441 POLR3GLQ9BT43 218 aa18.55■□□□□ 0.56
LIMS1-204ENST00000409441 ADGRB2O60241 1585 aa18.55■□□□□ 0.56
LIMS1-204ENST00000409441 YTHDC1Q96MU7 727 aaKnown RBP18.54■□□□□ 0.56
LIMS1-204ENST00000409441 PRR36Q9H6K5 1346 aa18.54■□□□□ 0.56
LIMS1-204ENST00000409441 CDC42BPGQ6DT37 1551 aa18.53■□□□□ 0.56
LIMS1-204ENST00000409441 CCDC61Q9Y6R9 512 aa18.53■□□□□ 0.56
LIMS1-204ENST00000409441 KIF7Q2M1P5 1343 aa18.52■□□□□ 0.56
LIMS1-204ENST00000409441 TOM1O60784 492 aa18.52■□□□□ 0.55
LIMS1-204ENST00000409441 DDX10Q13206 875 aaKnown RBP18.52■□□□□ 0.55
LIMS1-204ENST00000409441 ESCO1Q5FWF5 840 aa18.51■□□□□ 0.55
LIMS1-204ENST00000409441 IQSEC2Q5JU85 1478 aa18.51■□□□□ 0.55
LIMS1-204ENST00000409441 UBAP1LF5GYI3 381 aa18.5■□□□□ 0.55
LIMS1-204ENST00000409441 TMC1Q8TDI8 760 aa18.5■□□□□ 0.55
LIMS1-204ENST00000409441 ORAI2Q96SN7 254 aa18.5■□□□□ 0.55
LIMS1-204ENST00000409441 CABP1Q9NZU7 370 aa18.5■□□□□ 0.55
LIMS1-204ENST00000409441 MST1RQ04912 1400 aa18.5■□□□□ 0.55
LIMS1-204ENST00000409441 WASHC2AQ641Q2 1341 aa18.5■□□□□ 0.55
LIMS1-204ENST00000409441 C1orf167Q5SNV9 1468 aa18.5■□□□□ 0.55
LIMS1-204ENST00000409441 ATAD2Q6PL18 1390 aa18.49■□□□□ 0.55
LIMS1-204ENST00000409441 ANKARQ7Z5J8 1434 aa18.49■□□□□ 0.55
LIMS1-204ENST00000409441 SLC12A5Q9H2X9 1139 aa18.49■□□□□ 0.55
LIMS1-204ENST00000409441 CCDC7Q96M83 1385 aa18.48■□□□□ 0.55
LIMS1-204ENST00000409441 FMN2Q9NZ56 1722 aa18.48■□□□□ 0.55
LIMS1-204ENST00000409441 PMFBP1Q8TBY8 1022 aa18.47■□□□□ 0.55
LIMS1-204ENST00000409441 PHF8Q9UPP1 1060 aa18.47■□□□□ 0.55
LIMS1-204ENST00000409441 PLEKHG3A1L390 1219 aa18.46■□□□□ 0.55
LIMS1-204ENST00000409441 ATP7BP35670 1465 aa18.46■□□□□ 0.55
LIMS1-204ENST00000409441 PPIP5K1Q6PFW1 1433 aa18.45■□□□□ 0.54
LIMS1-204ENST00000409441 PIP4K2BP78356 416 aa18.45■□□□□ 0.54
LIMS1-204ENST00000409441 BRINP3Q76B58 766 aa18.45■□□□□ 0.54
LIMS1-204ENST00000409441 USP32Q8NFA0 1604 aa18.44■□□□□ 0.54
LIMS1-204ENST00000409441 NGDNQ8NEJ9 315 aaKnown RBP18.44■□□□□ 0.54
LIMS1-204ENST00000409441 FOXO3O43524 673 aa18.42■□□□□ 0.54
LIMS1-204ENST00000409441 ACEP12821 1306 aa18.42■□□□□ 0.54
LIMS1-204ENST00000409441 CCER2I3L3R5 266 aa18.41■□□□□ 0.54
LIMS1-204ENST00000409441 GTF3C3Q9Y5Q9 886 aa18.41■□□□□ 0.54
LIMS1-204ENST00000409441 RGPD8O14715 1765 aaPredicted RBP18.41■□□□□ 0.54
LIMS1-204ENST00000409441 TERF2IPQ9NYB0 399 aa18.41■□□□□ 0.54
LIMS1-204ENST00000409441 NINLQ9Y2I6 1382 aa18.41■□□□□ 0.54
LIMS1-204ENST00000409441 ANP32CO43423 234 aa18.4■□□□□ 0.54
LIMS1-204ENST00000409441 PSME1Q06323 249 aa18.4■□□□□ 0.54
LIMS1-204ENST00000409441 ZNF692Q9BU19 519 aaPredicted RBP18.4■□□□□ 0.54
LIMS1-204ENST00000409441 HDGFL2Q7Z4V5 671 aaPredicted RBP18.39■□□□□ 0.53
LIMS1-204ENST00000409441 DDX17Q92841 729 aaKnown RBP18.39■□□□□ 0.53
LIMS1-204ENST00000409441 PANK3Q9H999 370 aa18.39■□□□□ 0.53
LIMS1-204ENST00000409441 POLR3AO14802 1390 aaPredicted RBP18.38■□□□□ 0.53
LIMS1-204ENST00000409441 NPHP3Q7Z494 1330 aa18.36■□□□□ 0.53
LIMS1-204ENST00000409441 XPCQ01831 940 aaPredicted RBP18.36■□□□□ 0.53
LIMS1-204ENST00000409441 KRT28Q7Z3Y7 464 aa18.36■□□□□ 0.53
LIMS1-204ENST00000409441 CPSF1Q10570 1443 aaKnown RBP18.36■□□□□ 0.53
LIMS1-204ENST00000409441 ANKRD36BQ8N2N9 1353 aa18.36■□□□□ 0.53
LIMS1-204ENST00000409441 TOPAZ1Q8N9V7 1692 aa18.35■□□□□ 0.53
LIMS1-204ENST00000409441 CD163L1Q9NR16 1453 aa18.35■□□□□ 0.53
LIMS1-204ENST00000409441 CARD14Q9BXL6 1004 aa18.35■□□□□ 0.53
LIMS1-204ENST00000409441 ITSN1Q15811 1721 aa18.35■□□□□ 0.53
LIMS1-204ENST00000409441 KTN1Q86UP2 1357 aaKnown RBP18.35■□□□□ 0.53
LIMS1-204ENST00000409441 A0A1W2PP64 1363 aa18.34■□□□□ 0.53
LIMS1-204ENST00000409441 ROBO1Q9Y6N7 1651 aa18.32■□□□□ 0.52
LIMS1-204ENST00000409441 KIF1AQ12756 1690 aa18.32■□□□□ 0.52
LIMS1-204ENST00000409441 PAK3O75914 559 aaPredicted RBP18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms