RNA–Protein interactions for RNA: ENST00000409225.2

CHMP3-203, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,099 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-203ENST00000409225 ESCO1Q5FWF5 840 aa25.41■■□□□ 1.66
CHMP3-203ENST00000409225 HFM1A2PYH4 1435 aa25.4■■□□□ 1.66
CHMP3-203ENST00000409225 CCDC125Q86Z20 511 aa25.4■■□□□ 1.66
CHMP3-203ENST00000409225 NPHP3Q7Z494 1330 aa25.39■■□□□ 1.66
CHMP3-203ENST00000409225 PRAG1Q86YV5 1406 aa25.39■■□□□ 1.66
CHMP3-203ENST00000409225 XPCQ01831 940 aaPredicted RBP25.39■■□□□ 1.66
CHMP3-203ENST00000409225 EP400Q96L91 3159 aa25.39■■□□□ 1.65
CHMP3-203ENST00000409225 PPARGC1BQ86YN6 1023 aaKnown RBP25.38■■□□□ 1.65
CHMP3-203ENST00000409225 PXDNQ92626 1479 aa25.37■■□□□ 1.65
CHMP3-203ENST00000409225 GJD4Q96KN9 370 aaPredicted RBP25.37■■□□□ 1.65
CHMP3-203ENST00000409225 MARF1Q9Y4F3 1742 aaKnown RBP25.35■■□□□ 1.65
CHMP3-203ENST00000409225 FOXO3O43524 673 aa25.35■■□□□ 1.65
CHMP3-203ENST00000409225 CDC42BPGQ6DT37 1551 aa25.34■■□□□ 1.65
CHMP3-203ENST00000409225 RPGRIP1LQ68CZ1 1315 aa25.33■■□□□ 1.64
CHMP3-203ENST00000409225 NUTM2FA1L443 756 aa25.31■■□□□ 1.64
CHMP3-203ENST00000409225 PPLO60437 1756 aa25.29■■□□□ 1.64
CHMP3-203ENST00000409225 LRPPRCP42704 1394 aaKnown RBP25.29■■□□□ 1.64
CHMP3-203ENST00000409225 NAIPQ13075 1403 aa25.29■■□□□ 1.64
CHMP3-203ENST00000409225 RALGAPBQ86X10 1494 aa25.28■■□□□ 1.64
CHMP3-203ENST00000409225 UNC5CLQ8IV45 518 aa25.28■■□□□ 1.64
CHMP3-203ENST00000409225 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.28■■□□□ 1.64
CHMP3-203ENST00000409225 BLMP54132 1417 aaPredicted RBP25.28■■□□□ 1.64
CHMP3-203ENST00000409225 GLI3P10071 1580 aa25.27■■□□□ 1.64
CHMP3-203ENST00000409225 WAPLQ7Z5K2 1190 aa25.25■■□□□ 1.63
CHMP3-203ENST00000409225 DEFB132Q7Z7B7 95 aa25.25■■□□□ 1.63
CHMP3-203ENST00000409225 STK26Q9P289 416 aa25.25■■□□□ 1.63
CHMP3-203ENST00000409225 SLIT2O94813 1529 aa25.25■■□□□ 1.63
CHMP3-203ENST00000409225 SPATA31A3Q5VYP0 1347 aa25.21■■□□□ 1.63
CHMP3-203ENST00000409225 SF3B2Q13435 895 aaKnown RBP25.21■■□□□ 1.63
CHMP3-203ENST00000409225 SLC4A1APQ9BWU0 796 aaKnown RBP25.21■■□□□ 1.63
CHMP3-203ENST00000409225 BRWD3Q6RI45 1802 aa25.21■■□□□ 1.63
CHMP3-203ENST00000409225 ADGRF5Q8IZF2 1346 aa25.2■■□□□ 1.62
CHMP3-203ENST00000409225 SEPT12Q8IYM1 358 aa25.19■■□□□ 1.62
CHMP3-203ENST00000409225 USP32Q8NFA0 1604 aa25.19■■□□□ 1.62
CHMP3-203ENST00000409225 PLEKHH1Q9ULM0 1364 aa25.18■■□□□ 1.62
CHMP3-203ENST00000409225 HAP1P54257 671 aaPredicted RBP25.18■■□□□ 1.62
CHMP3-203ENST00000409225 TECPR2O15040 1411 aa25.18■■□□□ 1.62
CHMP3-203ENST00000409225 PLEKHG5O94827 1062 aa25.17■■□□□ 1.62
CHMP3-203ENST00000409225 KRT28Q7Z3Y7 464 aa25.17■■□□□ 1.62
CHMP3-203ENST00000409225 CCDC144AA2RUR9 1427 aa25.17■■□□□ 1.62
CHMP3-203ENST00000409225 RRBP1Q9P2E9 1410 aaKnown RBP25.17■■□□□ 1.62
CHMP3-203ENST00000409225 FMN2Q9NZ56 1722 aa25.15■■□□□ 1.62
CHMP3-203ENST00000409225 TMEM132EQ6IEE7 984 aa25.15■■□□□ 1.62
CHMP3-203ENST00000409225 KIF1AQ12756 1690 aa25.15■■□□□ 1.62
CHMP3-203ENST00000409225 VPS72Q15906 364 aa25.14■■□□□ 1.62
CHMP3-203ENST00000409225 CCDC9Q9Y3X0 531 aaKnown RBP25.14■■□□□ 1.62
CHMP3-203ENST00000409225 RGL3Q3MIN7 710 aa25.13■■□□□ 1.61
CHMP3-203ENST00000409225 CABLES1Q8TDN4 633 aa25.13■■□□□ 1.61
CHMP3-203ENST00000409225 ABCC11Q96J66 1382 aa25.13■■□□□ 1.61
CHMP3-203ENST00000409225 KRT27Q7Z3Y8 459 aa25.11■■□□□ 1.61
CHMP3-203ENST00000409225 KNDC1Q76NI1 1749 aa25.11■■□□□ 1.61
CHMP3-203ENST00000409225 LRP5O75197 1615 aa25.11■■□□□ 1.61
CHMP3-203ENST00000409225 TNS3Q68CZ2 1445 aa25.11■■□□□ 1.61
CHMP3-203ENST00000409225 PLCH1Q4KWH8 1693 aa25.1■■□□□ 1.61
CHMP3-203ENST00000409225 PSDA5PKW4 1024 aaPredicted RBP25.08■■□□□ 1.61
CHMP3-203ENST00000409225 PSME1Q06323 249 aa25.08■■□□□ 1.61
CHMP3-203ENST00000409225 LMOD2Q6P5Q4 547 aa25.08■■□□□ 1.61
CHMP3-203ENST00000409225 PHF8Q9UPP1 1060 aa25.08■■□□□ 1.61
CHMP3-203ENST00000409225 ANKRD30BQ9BXX2 1392 aa25.07■■□□□ 1.6
CHMP3-203ENST00000409225 YTHDC2Q9H6S0 1430 aaKnown RBP25.07■■□□□ 1.6
CHMP3-203ENST00000409225 A0A0G2JS52 829 aa25.07■■□□□ 1.6
CHMP3-203ENST00000409225 MYT1Q01538 1121 aa25.07■■□□□ 1.6
CHMP3-203ENST00000409225 NWD2Q9ULI1 1742 aa25.06■■□□□ 1.6
CHMP3-203ENST00000409225 ONECUT3O60422 494 aaPredicted RBP25.06■■□□□ 1.6
CHMP3-203ENST00000409225 SPATA31E1Q6ZUB1 1445 aa25.05■■□□□ 1.6
CHMP3-203ENST00000409225 IFT172Q9UG01 1749 aa25.05■■□□□ 1.6
CHMP3-203ENST00000409225 RGPD8O14715 1765 aaPredicted RBP25.04■■□□□ 1.6
CHMP3-203ENST00000409225 BAG6P46379 1132 aa25.04■■□□□ 1.6
CHMP3-203ENST00000409225 PIK3C2GO75747 1445 aa25.03■■□□□ 1.6
CHMP3-203ENST00000409225 ABCA3Q99758 1704 aa25.03■■□□□ 1.6
CHMP3-203ENST00000409225 SBNO1A3KN83 1393 aa25.02■■□□□ 1.6
CHMP3-203ENST00000409225 FAM83GA6ND36 823 aa25.01■■□□□ 1.59
CHMP3-203ENST00000409225 HRCP23327 699 aa25.01■■□□□ 1.59
CHMP3-203ENST00000409225 ARHGEF10O15013 1369 aa25.01■■□□□ 1.59
CHMP3-203ENST00000409225 FAM98CQ17RN3 349 aaKnown RBP25■■□□□ 1.59
CHMP3-203ENST00000409225 NRXN1Q9ULB1 1477 aa25■■□□□ 1.59
CHMP3-203ENST00000409225 SAFB2Q14151 953 aaKnown RBP eCLIP24.98■■□□□ 1.59
CHMP3-203ENST00000409225 SIRT1Q96EB6 747 aa24.98■■□□□ 1.59
CHMP3-203ENST00000409225 PMFBP1Q8TBY8 1022 aa24.96■■□□□ 1.59
CHMP3-203ENST00000409225 EN1Q05925 392 aaPredicted RBP24.95■■□□□ 1.58
CHMP3-203ENST00000409225 BTG4Q9NY30 223 aa24.95■■□□□ 1.58
CHMP3-203ENST00000409225 NRAPQ86VF7 1730 aa24.95■■□□□ 1.58
CHMP3-203ENST00000409225 FAM182BQ5T319 152 aa24.94■■□□□ 1.58
CHMP3-203ENST00000409225 PRAM1Q96QH2 718 aa24.94■■□□□ 1.58
CHMP3-203ENST00000409225 C14orf93Q9H972 538 aaKnown RBP24.93■■□□□ 1.58
CHMP3-203ENST00000409225 DHX57Q6P158 1386 aaKnown RBP24.93■■□□□ 1.58
CHMP3-203ENST00000409225 CFAP70Q5T0N1 1121 aa24.92■■□□□ 1.58
CHMP3-203ENST00000409225 R3HDM1Q15032 1099 aaKnown RBP24.91■■□□□ 1.58
CHMP3-203ENST00000409225 MPHOSPH9Q99550 1183 aa24.91■■□□□ 1.58
CHMP3-203ENST00000409225 RGPD1P0DJD0 1748 aa24.91■■□□□ 1.58
CHMP3-203ENST00000409225 ANKARQ7Z5J8 1434 aa24.88■■□□□ 1.57
CHMP3-203ENST00000409225 COL14A1Q05707 1796 aaKnown RBP24.88■■□□□ 1.57
CHMP3-203ENST00000409225 POGKQ9P215 609 aa24.88■■□□□ 1.57
CHMP3-203ENST00000409225 TRPM3Q9HCF6 1732 aaPredicted RBP24.86■■□□□ 1.57
CHMP3-203ENST00000409225 SPATA31A5Q5VU36 1347 aa24.86■■□□□ 1.57
CHMP3-203ENST00000409225 SPATA31A7Q8IWB4 1347 aa24.86■■□□□ 1.57
CHMP3-203ENST00000409225 GPRASP1Q5JY77 1395 aa24.84■■□□□ 1.57
CHMP3-203ENST00000409225 ALS2Q96Q42 1657 aa24.83■■□□□ 1.57
CHMP3-203ENST00000409225 EZH2Q15910 746 aaKnown RBP24.83■■□□□ 1.57
CHMP3-203ENST00000409225 HIRIP3Q9BW71 556 aaPredicted RBP24.83■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms