RNA–Protein interactions for RNA: ENST00000407422.7

SMARCB1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-204ENST00000407422 YTHDC2Q9H6S0 1430 aaKnown RBP28.38■■■□□ 2.13
SMARCB1-204ENST00000407422 CFAP70Q5T0N1 1121 aa28.37■■■□□ 2.13
SMARCB1-204ENST00000407422 PLEKHH1Q9ULM0 1364 aa28.37■■■□□ 2.13
SMARCB1-204ENST00000407422 CDC42BPGQ6DT37 1551 aa28.35■■■□□ 2.13
SMARCB1-204ENST00000407422 LRRC59Q96AG4 307 aaKnown RBP28.34■■■□□ 2.13
SMARCB1-204ENST00000407422 LAMC1P11047 1609 aa28.34■■■□□ 2.13
SMARCB1-204ENST00000407422 NUTM2BA6NNL0 878 aaPredicted RBP28.32■■■□□ 2.12
SMARCB1-204ENST00000407422 NUTM2EB1AL46 878 aaPredicted RBP28.32■■■□□ 2.12
SMARCB1-204ENST00000407422 MEX3CQ5U5Q3 659 aaKnown RBP28.32■■■□□ 2.12
SMARCB1-204ENST00000407422 NUTM2AQ8IVF1 878 aaPredicted RBP28.32■■■□□ 2.12
SMARCB1-204ENST00000407422 DHX57Q6P158 1386 aaKnown RBP28.28■■■□□ 2.12
SMARCB1-204ENST00000407422 PNPLA6Q8IY17 1366 aa28.28■■■□□ 2.12
SMARCB1-204ENST00000407422 NUTM2FA1L443 756 aa28.28■■■□□ 2.12
SMARCB1-204ENST00000407422 KDM2AQ9Y2K7 1162 aa28.28■■■□□ 2.12
SMARCB1-204ENST00000407422 ESCO1Q5FWF5 840 aa28.27■■■□□ 2.12
SMARCB1-204ENST00000407422 DCAF11Q8TEB1 546 aa28.27■■■□□ 2.12
SMARCB1-204ENST00000407422 SOS2Q07890 1332 aaPredicted RBP28.27■■■□□ 2.12
SMARCB1-204ENST00000407422 SIRT1Q96EB6 747 aa28.25■■■□□ 2.11
SMARCB1-204ENST00000407422 FMN2Q9NZ56 1722 aa28.24■■■□□ 2.11
SMARCB1-204ENST00000407422 ADGRB1O14514 1584 aa28.22■■■□□ 2.11
SMARCB1-204ENST00000407422 SAFB2Q14151 953 aaKnown RBP eCLIP28.21■■■□□ 2.11
SMARCB1-204ENST00000407422 PRAM1Q96QH2 718 aa28.21■■■□□ 2.11
SMARCB1-204ENST00000407422 FOXO3O43524 673 aa28.19■■■□□ 2.1
SMARCB1-204ENST00000407422 ZNF772Q68DY9 489 aaPredicted RBP28.19■■■□□ 2.1
SMARCB1-204ENST00000407422 RGPD8O14715 1765 aaPredicted RBP28.18■■■□□ 2.1
SMARCB1-204ENST00000407422 NPHP3Q7Z494 1330 aa28.18■■■□□ 2.1
SMARCB1-204ENST00000407422 XPCQ01831 940 aaPredicted RBP28.18■■■□□ 2.1
SMARCB1-204ENST00000407422 DLC1Q96QB1 1528 aa28.17■■■□□ 2.1
SMARCB1-204ENST00000407422 PXDNQ92626 1479 aa28.17■■■□□ 2.1
SMARCB1-204ENST00000407422 TRAK1Q9UPV9 953 aa28.15■■■□□ 2.1
SMARCB1-204ENST00000407422 AFF2P51816 1311 aa28.15■■■□□ 2.1
SMARCB1-204ENST00000407422 STAC3Q96MF2 364 aa28.14■■■□□ 2.1
SMARCB1-204ENST00000407422 C8orf37Q96NL8 207 aa28.14■■■□□ 2.1
SMARCB1-204ENST00000407422 POGKQ9P215 609 aa28.14■■■□□ 2.1
SMARCB1-204ENST00000407422 ADAMTS2O95450 1211 aa28.14■■■□□ 2.09
SMARCB1-204ENST00000407422 COL22A1Q8NFW1 1626 aaPredicted RBP28.12■■■□□ 2.09
SMARCB1-204ENST00000407422 KIF1AQ12756 1690 aa28.11■■■□□ 2.09
SMARCB1-204ENST00000407422 HIRIP3Q9BW71 556 aaPredicted RBP28.07■■■□□ 2.08
SMARCB1-204ENST00000407422 ADGRB2O60241 1585 aa28.06■■■□□ 2.08
SMARCB1-204ENST00000407422 NGLY1Q96IV0 654 aa28.06■■■□□ 2.08
SMARCB1-204ENST00000407422 USP32Q8NFA0 1604 aa28.05■■■□□ 2.08
SMARCB1-204ENST00000407422 RXRBP28702 533 aa28.05■■■□□ 2.08
SMARCB1-204ENST00000407422 PHF8Q9UPP1 1060 aa28.05■■■□□ 2.08
SMARCB1-204ENST00000407422 MINK1Q8N4C8 1332 aaPredicted RBP28.05■■■□□ 2.08
SMARCB1-204ENST00000407422 ARHGEF28Q8N1W1 1705 aaKnown RBP28.03■■■□□ 2.08
SMARCB1-204ENST00000407422 KRT28Q7Z3Y7 464 aa28.03■■■□□ 2.08
SMARCB1-204ENST00000407422 SPATA31A3Q5VYP0 1347 aa28.01■■■□□ 2.07
SMARCB1-204ENST00000407422 QTRT2Q9H974 415 aaKnown RBP28.01■■■□□ 2.07
SMARCB1-204ENST00000407422 ANKARQ7Z5J8 1434 aa28■■■□□ 2.07
SMARCB1-204ENST00000407422 PMFBP1Q8TBY8 1022 aa27.99■■■□□ 2.07
SMARCB1-204ENST00000407422 KIAA1210Q9ULL0 1709 aa27.98■■■□□ 2.07
SMARCB1-204ENST00000407422 MARF1Q9Y4F3 1742 aaKnown RBP27.98■■■□□ 2.07
SMARCB1-204ENST00000407422 PRR36Q9H6K5 1346 aa27.96■■■□□ 2.07
SMARCB1-204ENST00000407422 WASLO00401 505 aaPredicted RBP27.96■■■□□ 2.07
SMARCB1-204ENST00000407422 FNBP4Q8N3X1 1017 aaPredicted RBP27.96■■■□□ 2.07
SMARCB1-204ENST00000407422 USP21Q9UK80 565 aa27.96■■■□□ 2.07
SMARCB1-204ENST00000407422 CDK12Q9NYV4 1490 aaPredicted RBP27.95■■■□□ 2.06
SMARCB1-204ENST00000407422 NBPF1Q3BBV0 1214 aa27.95■■■□□ 2.06
SMARCB1-204ENST00000407422 PSME1Q06323 249 aa27.94■■■□□ 2.06
SMARCB1-204ENST00000407422 SIN3AQ96ST3 1273 aa27.94■■■□□ 2.06
SMARCB1-204ENST00000407422 TULP4Q9NRJ4 1543 aa27.94■■■□□ 2.06
SMARCB1-204ENST00000407422 TNS3Q68CZ2 1445 aa27.93■■■□□ 2.06
SMARCB1-204ENST00000407422 RBM6P78332 1123 aaKnown RBP27.93■■■□□ 2.06
SMARCB1-204ENST00000407422 EIF3AQ14152 1382 aaKnown RBP27.91■■■□□ 2.06
SMARCB1-204ENST00000407422 L3MBTL2Q969R5 705 aa27.91■■■□□ 2.06
SMARCB1-204ENST00000407422 SBNO1A3KN83 1393 aa27.9■■■□□ 2.06
SMARCB1-204ENST00000407422 RGS12O14924 1447 aa27.9■■■□□ 2.06
SMARCB1-204ENST00000407422 PLEKHG5O94827 1062 aa27.89■■■□□ 2.05
SMARCB1-204ENST00000407422 LMOD2Q6P5Q4 547 aa27.89■■■□□ 2.05
SMARCB1-204ENST00000407422 CABLES1Q8TDN4 633 aa27.89■■■□□ 2.05
SMARCB1-204ENST00000407422 TRPC5Q9UL62 973 aaPredicted RBP27.88■■■□□ 2.05
SMARCB1-204ENST00000407422 BCL9LQ86UU0 1499 aa27.88■■■□□ 2.05
SMARCB1-204ENST00000407422 TRPM3Q9HCF6 1732 aaPredicted RBP27.87■■■□□ 2.05
SMARCB1-204ENST00000407422 NEUROD1Q13562 356 aa27.86■■■□□ 2.05
SMARCB1-204ENST00000407422 ATRNO75882 1429 aa27.86■■■□□ 2.05
SMARCB1-204ENST00000407422 ABCA3Q99758 1704 aa27.84■■■□□ 2.05
SMARCB1-204ENST00000407422 ATP7BP35670 1465 aa27.84■■■□□ 2.05
SMARCB1-204ENST00000407422 UPF1Q92900 1129 aaKnown RBP eCLIP27.84■■■□□ 2.058e-14■■■■□ 25.9
SMARCB1-204ENST00000407422 ARHGEF10O15013 1369 aa27.84■■■□□ 2.05
SMARCB1-204ENST00000407422 ITSN1Q15811 1721 aa27.83■■■□□ 2.05
SMARCB1-204ENST00000407422 NUDT16Q96DE0 195 aaKnown RBP27.83■■■□□ 2.05
SMARCB1-204ENST00000407422 CDK19Q9BWU1 502 aa27.83■■■□□ 2.05
SMARCB1-204ENST00000407422 HAP1P54257 671 aaPredicted RBP27.82■■■□□ 2.04
SMARCB1-204ENST00000407422 GPRASP1Q5JY77 1395 aa27.82■■■□□ 2.04
SMARCB1-204ENST00000407422 NGDNQ8NEJ9 315 aaKnown RBP27.81■■■□□ 2.04
SMARCB1-204ENST00000407422 ALS2Q96Q42 1657 aa27.81■■■□□ 2.04
SMARCB1-204ENST00000407422 SLIT2O94813 1529 aa27.8■■■□□ 2.04
SMARCB1-204ENST00000407422 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.78■■■□□ 2.04
SMARCB1-204ENST00000407422 TRPM1Q7Z4N2 1603 aa27.77■■■□□ 2.04
SMARCB1-204ENST00000407422 TOPAZ1Q8N9V7 1692 aa27.76■■■□□ 2.03
SMARCB1-204ENST00000407422 UNC5CLQ8IV45 518 aa27.76■■■□□ 2.03
SMARCB1-204ENST00000407422 EP400Q96L91 3159 aa27.76■■■□□ 2.03
SMARCB1-204ENST00000407422 CENPJQ9HC77 1338 aaPredicted RBP27.75■■■□□ 2.03
SMARCB1-204ENST00000407422 PAK3O75914 559 aaPredicted RBP27.74■■■□□ 2.03
SMARCB1-204ENST00000407422 GJD4Q96KN9 370 aaPredicted RBP27.74■■■□□ 2.03
SMARCB1-204ENST00000407422 PLCH1Q4KWH8 1693 aa27.74■■■□□ 2.03
SMARCB1-204ENST00000407422 QRICH2Q9H0J4 1663 aa27.74■■■□□ 2.03
SMARCB1-204ENST00000407422 CCDC61Q9Y6R9 512 aa27.72■■■□□ 2.03
SMARCB1-204ENST00000407422 FAM83GA6ND36 823 aa27.71■■■□□ 2.03
SMARCB1-204ENST00000407422 NWD2Q9ULI1 1742 aa27.7■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms