RNA–Protein interactions for RNA: ENST00000403997.2

SDF4-203, Transcript of stromal cell derived factor 4, humanhuman

TSL 3

Gene SDF4, Length 728 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-203ENST00000403997 NRXN1Q9ULB1 1477 aa19.44■□□□□ 0.7
SDF4-203ENST00000403997 MEX3CQ5U5Q3 659 aaKnown RBP19.44■□□□□ 0.7
SDF4-203ENST00000403997 NUTM2BA6NNL0 878 aaPredicted RBP19.43■□□□□ 0.7
SDF4-203ENST00000403997 NUTM2EB1AL46 878 aaPredicted RBP19.43■□□□□ 0.7
SDF4-203ENST00000403997 NUTM2AQ8IVF1 878 aaPredicted RBP19.43■□□□□ 0.7
SDF4-203ENST00000403997 SIRT1Q96EB6 747 aa19.43■□□□□ 0.7
SDF4-203ENST00000403997 PLEKHH1Q9ULM0 1364 aa19.43■□□□□ 0.7
SDF4-203ENST00000403997 ESCO1Q5FWF5 840 aa19.42■□□□□ 0.7
SDF4-203ENST00000403997 NUTM2FA1L443 756 aa19.41■□□□□ 0.7
SDF4-203ENST00000403997 POTEAQ6S8J7 498 aa19.41■□□□□ 0.7
SDF4-203ENST00000403997 STAC3Q96MF2 364 aa19.41■□□□□ 0.7
SDF4-203ENST00000403997 SAFB2Q14151 953 aaKnown RBP eCLIP19.38■□□□□ 0.69
SDF4-203ENST00000403997 PRAM1Q96QH2 718 aa19.38■□□□□ 0.69
SDF4-203ENST00000403997 NHSL1Q5SYE7 1610 aa19.37■□□□□ 0.69
SDF4-203ENST00000403997 POGKQ9P215 609 aa19.37■□□□□ 0.69
SDF4-203ENST00000403997 SHPRHQ149N8 1683 aa19.36■□□□□ 0.69
SDF4-203ENST00000403997 LRP6O75581 1613 aa19.36■□□□□ 0.69
SDF4-203ENST00000403997 CDC42BPGQ6DT37 1551 aa19.36■□□□□ 0.69
SDF4-203ENST00000403997 SOS2Q07890 1332 aaPredicted RBP19.36■□□□□ 0.69
SDF4-203ENST00000403997 TRAK1Q9UPV9 953 aa19.36■□□□□ 0.69
SDF4-203ENST00000403997 KNDC1Q76NI1 1749 aa19.36■□□□□ 0.69
SDF4-203ENST00000403997 LAMC1P11047 1609 aa19.36■□□□□ 0.69
SDF4-203ENST00000403997 FOXO3O43524 673 aa19.35■□□□□ 0.69
SDF4-203ENST00000403997 PNPLA6Q8IY17 1366 aa19.34■□□□□ 0.69
SDF4-203ENST00000403997 NPHP3Q7Z494 1330 aa19.33■□□□□ 0.69
SDF4-203ENST00000403997 XPCQ01831 940 aaPredicted RBP19.32■□□□□ 0.68
SDF4-203ENST00000403997 ZNF772Q68DY9 489 aaPredicted RBP19.32■□□□□ 0.68
SDF4-203ENST00000403997 ADGRB1O14514 1584 aa19.29■□□□□ 0.68
SDF4-203ENST00000403997 ADAMTS2O95450 1211 aa19.28■□□□□ 0.68
SDF4-203ENST00000403997 C8orf37Q96NL8 207 aa19.28■□□□□ 0.68
SDF4-203ENST00000403997 DLC1Q96QB1 1528 aa19.28■□□□□ 0.68
SDF4-203ENST00000403997 MINK1Q8N4C8 1332 aaPredicted RBP19.27■□□□□ 0.68
SDF4-203ENST00000403997 HIRIP3Q9BW71 556 aaPredicted RBP19.27■□□□□ 0.68
SDF4-203ENST00000403997 AFF2P51816 1311 aa19.26■□□□□ 0.67
SDF4-203ENST00000403997 PHF8Q9UPP1 1060 aa19.26■□□□□ 0.67
SDF4-203ENST00000403997 FMN2Q9NZ56 1722 aa19.25■□□□□ 0.67
SDF4-203ENST00000403997 KRT28Q7Z3Y7 464 aa19.25■□□□□ 0.67
SDF4-203ENST00000403997 NGLY1Q96IV0 654 aa19.25■□□□□ 0.67
SDF4-203ENST00000403997 PXDNQ92626 1479 aa19.24■□□□□ 0.67
SDF4-203ENST00000403997 SIN3AQ96ST3 1273 aa19.24■□□□□ 0.67
SDF4-203ENST00000403997 NEUROD1Q13562 356 aa19.23■□□□□ 0.67
SDF4-203ENST00000403997 RXRBP28702 533 aa19.22■□□□□ 0.67
SDF4-203ENST00000403997 PSME1Q06323 249 aa19.22■□□□□ 0.67
SDF4-203ENST00000403997 WASLO00401 505 aaPredicted RBP19.21■□□□□ 0.67
SDF4-203ENST00000403997 NBPF1Q3BBV0 1214 aa19.21■□□□□ 0.67
SDF4-203ENST00000403997 PMFBP1Q8TBY8 1022 aa19.21■□□□□ 0.67
SDF4-203ENST00000403997 L3MBTL2Q969R5 705 aa19.21■□□□□ 0.67
SDF4-203ENST00000403997 QTRT2Q9H974 415 aaKnown RBP19.2■□□□□ 0.66
SDF4-203ENST00000403997 SPATA31A3Q5VYP0 1347 aa19.2■□□□□ 0.66
SDF4-203ENST00000403997 ANKARQ7Z5J8 1434 aa19.19■□□□□ 0.66
SDF4-203ENST00000403997 RGPD8O14715 1765 aaPredicted RBP19.19■□□□□ 0.66
SDF4-203ENST00000403997 KIF1AQ12756 1690 aa19.18■□□□□ 0.66
SDF4-203ENST00000403997 EIF3AQ14152 1382 aaKnown RBP19.18■□□□□ 0.66
SDF4-203ENST00000403997 TRIM26Q12899 539 aaPredicted RBP19.17■□□□□ 0.66
SDF4-203ENST00000403997 ADGRB2O60241 1585 aa19.16■□□□□ 0.66
SDF4-203ENST00000403997 LMOD2Q6P5Q4 547 aa19.16■□□□□ 0.66
SDF4-203ENST00000403997 USP21Q9UK80 565 aa19.16■□□□□ 0.66
SDF4-203ENST00000403997 PRR36Q9H6K5 1346 aa19.16■□□□□ 0.66
SDF4-203ENST00000403997 COL22A1Q8NFW1 1626 aaPredicted RBP19.15■□□□□ 0.66
SDF4-203ENST00000403997 PLEKHG5O94827 1062 aa19.15■□□□□ 0.66
SDF4-203ENST00000403997 HAP1P54257 671 aaPredicted RBP19.14■□□□□ 0.65
SDF4-203ENST00000403997 RBM6P78332 1123 aaKnown RBP19.14■□□□□ 0.65
SDF4-203ENST00000403997 FNBP4Q8N3X1 1017 aaPredicted RBP19.14■□□□□ 0.65
SDF4-203ENST00000403997 CDK19Q9BWU1 502 aa19.14■□□□□ 0.65
SDF4-203ENST00000403997 NGDNQ8NEJ9 315 aaKnown RBP19.13■□□□□ 0.65
SDF4-203ENST00000403997 NUDT16Q96DE0 195 aaKnown RBP19.13■□□□□ 0.65
SDF4-203ENST00000403997 SBNO1A3KN83 1393 aa19.13■□□□□ 0.65
SDF4-203ENST00000403997 KIAA1210Q9ULL0 1709 aa19.13■□□□□ 0.65
SDF4-203ENST00000403997 ARHGEF28Q8N1W1 1705 aaKnown RBP19.12■□□□□ 0.65
SDF4-203ENST00000403997 TULP4Q9NRJ4 1543 aa19.12■□□□□ 0.65
SDF4-203ENST00000403997 TNS3Q68CZ2 1445 aa19.12■□□□□ 0.65
SDF4-203ENST00000403997 GPRASP1Q5JY77 1395 aa19.12■□□□□ 0.65
SDF4-203ENST00000403997 CABLES1Q8TDN4 633 aa19.12■□□□□ 0.65
SDF4-203ENST00000403997 TRPC5Q9UL62 973 aaPredicted RBP19.12■□□□□ 0.65
SDF4-203ENST00000403997 USP32Q8NFA0 1604 aa19.11■□□□□ 0.65
SDF4-203ENST00000403997 ARHGEF10O15013 1369 aa19.09■□□□□ 0.65
SDF4-203ENST00000403997 CENPJQ9HC77 1338 aaPredicted RBP19.08■□□□□ 0.65
SDF4-203ENST00000403997 PAK3O75914 559 aaPredicted RBP19.08■□□□□ 0.64
SDF4-203ENST00000403997 CDK12Q9NYV4 1490 aaPredicted RBP19.08■□□□□ 0.64
SDF4-203ENST00000403997 CCDC61Q9Y6R9 512 aa19.06■□□□□ 0.64
SDF4-203ENST00000403997 SRPK2P78362 688 aaKnown RBP19.05■□□□□ 0.64
SDF4-203ENST00000403997 ATP7BP35670 1465 aa19.04■□□□□ 0.64
SDF4-203ENST00000403997 BCL9LQ86UU0 1499 aa19.04■□□□□ 0.64
SDF4-203ENST00000403997 UNC5CLQ8IV45 518 aa19.04■□□□□ 0.64
SDF4-203ENST00000403997 ROCK2O75116 1388 aaKnown RBP19.04■□□□□ 0.64
SDF4-203ENST00000403997 ATRNO75882 1429 aa19.03■□□□□ 0.64
SDF4-203ENST00000403997 RGS12O14924 1447 aa19.02■□□□□ 0.64
SDF4-203ENST00000403997 PLEKHG3A1L390 1219 aa19.02■□□□□ 0.64
SDF4-203ENST00000403997 NBPF8Q3BBV2 869 aa19.02■□□□□ 0.64
SDF4-203ENST00000403997 UPF1Q92900 1129 aaKnown RBP eCLIP19.02■□□□□ 0.64
SDF4-203ENST00000403997 GJD4Q96KN9 370 aaPredicted RBP19.02■□□□□ 0.64
SDF4-203ENST00000403997 CABP2Q9NPB3 220 aa19.02■□□□□ 0.64
SDF4-203ENST00000403997 MARF1Q9Y4F3 1742 aaKnown RBP19.02■□□□□ 0.63
SDF4-203ENST00000403997 ACEP12821 1306 aa19.01■□□□□ 0.63
SDF4-203ENST00000403997 FAM83GA6ND36 823 aa19.01■□□□□ 0.63
SDF4-203ENST00000403997 TONSLQ96HA7 1378 aa19■□□□□ 0.63
SDF4-203ENST00000403997 TRPM3Q9HCF6 1732 aaPredicted RBP19■□□□□ 0.63
SDF4-203ENST00000403997 SLIT2O94813 1529 aa18.99■□□□□ 0.63
SDF4-203ENST00000403997 POLR3AO14802 1390 aaPredicted RBP18.98■□□□□ 0.63
SDF4-203ENST00000403997 ITSN1Q15811 1721 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms