RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 SBNO2Q9Y2G9 1366 aa25.18■■□□□ 1.62
SDC1-203ENST00000403076 C11orf95C9JLR9 678 aaPredicted RBP25.16■■□□□ 1.62
SDC1-203ENST00000403076 NKTRP30414 1462 aaKnown RBP25.16■■□□□ 1.62
SDC1-203ENST00000403076 C14orf37Q86TY3 774 aa25.16■■□□□ 1.62
SDC1-203ENST00000403076 EVC2Q86UK5 1308 aa25.16■■□□□ 1.62
SDC1-203ENST00000403076 RBM33Q96EV2 1170 aaKnown RBP25.16■■□□□ 1.62
SDC1-203ENST00000403076 CDCA8Q53HL2 280 aa25.15■■□□□ 1.62
SDC1-203ENST00000403076 DISP3Q9P2K9 1392 aa25.14■■□□□ 1.62
SDC1-203ENST00000403076 STRCP1A6NGW2 1772 aa25.11■■□□□ 1.61
SDC1-203ENST00000403076 KIF7Q2M1P5 1343 aa25.11■■□□□ 1.61
SDC1-203ENST00000403076 SRPK2P78362 688 aaKnown RBP25.11■■□□□ 1.61
SDC1-203ENST00000403076 CCDC7Q96M83 1385 aa25.1■■□□□ 1.61
SDC1-203ENST00000403076 WASHC2AQ641Q2 1341 aa25.1■■□□□ 1.61
SDC1-203ENST00000403076 CDK19Q9BWU1 502 aa25.1■■□□□ 1.61
SDC1-203ENST00000403076 WASLO00401 505 aaPredicted RBP25.09■■□□□ 1.61
SDC1-203ENST00000403076 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.08■■□□□ 1.61
SDC1-203ENST00000403076 TMEM94Q12767 1356 aa25.08■■□□□ 1.61
SDC1-203ENST00000403076 CABP2Q9NPB3 220 aa25.07■■□□□ 1.6
SDC1-203ENST00000403076 TULP4Q9NRJ4 1543 aa25.06■■□□□ 1.6
SDC1-203ENST00000403076 ADGRL3Q9HAR2 1447 aa25.04■■□□□ 1.6
SDC1-203ENST00000403076 PUS7Q96PZ0 661 aaKnown RBP25.02■■□□□ 1.6
SDC1-203ENST00000403076 NCOA3Q9Y6Q9 1424 aa25.02■■□□□ 1.6
SDC1-203ENST00000403076 LRRC7Q96NW7 1537 aa25.02■■□□□ 1.6
SDC1-203ENST00000403076 ADGRB2O60241 1585 aa25.02■■□□□ 1.6
SDC1-203ENST00000403076 DDX10Q13206 875 aaKnown RBP25.02■■□□□ 1.6
SDC1-203ENST00000403076 C19orf44Q9H6X5 657 aa25.02■■□□□ 1.6
SDC1-203ENST00000403076 NUTM2FA1L443 756 aa25.01■■□□□ 1.59
SDC1-203ENST00000403076 TMC1Q8TDI8 760 aa25■■□□□ 1.59
SDC1-203ENST00000403076 NALCNQ8IZF0 1738 aa24.99■■□□□ 1.59
SDC1-203ENST00000403076 ATAD2Q6PL18 1390 aa24.99■■□□□ 1.59
SDC1-203ENST00000403076 MSH6P52701 1360 aa24.98■■□□□ 1.59
SDC1-203ENST00000403076 ATF3P18847 181 aa24.97■■□□□ 1.59
SDC1-203ENST00000403076 NUDT16Q96DE0 195 aaKnown RBP24.97■■□□□ 1.59
SDC1-203ENST00000403076 CDC42BPGQ6DT37 1551 aa24.95■■□□□ 1.58
SDC1-203ENST00000403076 LTBP4Q8N2S1 1624 aa24.93■■□□□ 1.58
SDC1-203ENST00000403076 CCDC61Q9Y6R9 512 aa24.93■■□□□ 1.58
SDC1-203ENST00000403076 PRR36Q9H6K5 1346 aa24.92■■□□□ 1.58
SDC1-203ENST00000403076 SLC12A5Q9H2X9 1139 aa24.92■■□□□ 1.58
SDC1-203ENST00000403076 CADPS2Q86UW7 1296 aa24.91■■□□□ 1.58
SDC1-203ENST00000403076 CABP1Q9NZU7 370 aa24.91■■□□□ 1.58
SDC1-203ENST00000403076 XIRP1Q702N8 1843 aaKnown RBP24.91■■□□□ 1.58
SDC1-203ENST00000403076 FMN2Q9NZ56 1722 aa24.9■■□□□ 1.58
SDC1-203ENST00000403076 DCCP43146 1447 aa24.9■■□□□ 1.58
SDC1-203ENST00000403076 ATP7BP35670 1465 aa24.89■■□□□ 1.57
SDC1-203ENST00000403076 PANK3Q9H999 370 aa24.89■■□□□ 1.57
SDC1-203ENST00000403076 ANKARQ7Z5J8 1434 aa24.89■■□□□ 1.57
SDC1-203ENST00000403076 NINLQ9Y2I6 1382 aa24.89■■□□□ 1.57
SDC1-203ENST00000403076 PPIP5K1Q6PFW1 1433 aa24.88■■□□□ 1.57
SDC1-203ENST00000403076 TERF2IPQ9NYB0 399 aa24.86■■□□□ 1.57
SDC1-203ENST00000403076 ESCO1Q5FWF5 840 aa24.86■■□□□ 1.57
SDC1-203ENST00000403076 HDGFL2Q7Z4V5 671 aaPredicted RBP24.85■■□□□ 1.57
SDC1-203ENST00000403076 MYOM1P52179 1685 aa24.85■■□□□ 1.57
SDC1-203ENST00000403076 PMFBP1Q8TBY8 1022 aa24.84■■□□□ 1.57
SDC1-203ENST00000403076 DIEXFQ68CQ4 756 aaKnown RBP24.83■■□□□ 1.57
SDC1-203ENST00000403076 USP32Q8NFA0 1604 aa24.83■■□□□ 1.57
SDC1-203ENST00000403076 PLEKHG3A1L390 1219 aa24.82■■□□□ 1.56
SDC1-203ENST00000403076 NGDNQ8NEJ9 315 aaKnown RBP24.82■■□□□ 1.56
SDC1-203ENST00000403076 PHF8Q9UPP1 1060 aa24.82■■□□□ 1.56
SDC1-203ENST00000403076 MST1RQ04912 1400 aa24.81■■□□□ 1.56
SDC1-203ENST00000403076 C1orf167Q5SNV9 1468 aa24.81■■□□□ 1.56
SDC1-203ENST00000403076 ANKRD36BQ8N2N9 1353 aa24.81■■□□□ 1.56
SDC1-203ENST00000403076 RGPD8O14715 1765 aaPredicted RBP24.8■■□□□ 1.56
SDC1-203ENST00000403076 ITSN1Q15811 1721 aa24.8■■□□□ 1.56
SDC1-203ENST00000403076 ORAI2Q96SN7 254 aa24.8■■□□□ 1.56
SDC1-203ENST00000403076 SLAIN2Q9P270 581 aa24.8■■□□□ 1.56
SDC1-203ENST00000403076 ACEP12821 1306 aa24.8■■□□□ 1.56
SDC1-203ENST00000403076 KNSTRNQ9Y448 316 aa24.79■■□□□ 1.56
SDC1-203ENST00000403076 TOPAZ1Q8N9V7 1692 aa24.78■■□□□ 1.56
SDC1-203ENST00000403076 A0A1W2PP64 1363 aa24.78■■□□□ 1.56
SDC1-203ENST00000403076 ZNF692Q9BU19 519 aaPredicted RBP24.77■■□□□ 1.56
SDC1-203ENST00000403076 CARD14Q9BXL6 1004 aa24.76■■□□□ 1.55
SDC1-203ENST00000403076 KTN1Q86UP2 1357 aaKnown RBP24.75■■□□□ 1.55
SDC1-203ENST00000403076 CERKQ8TCT0 537 aa24.75■■□□□ 1.55
SDC1-203ENST00000403076 CNGB1Q14028 1251 aaPredicted RBP24.74■■□□□ 1.55
SDC1-203ENST00000403076 CD163L1Q9NR16 1453 aa24.74■■□□□ 1.55
SDC1-203ENST00000403076 CPSF1Q10570 1443 aaKnown RBP24.73■■□□□ 1.55
SDC1-203ENST00000403076 PER1O15534 1290 aaPredicted RBP24.73■■□□□ 1.55
SDC1-203ENST00000403076 NSD3Q9BZ95 1437 aa24.72■■□□□ 1.55
SDC1-203ENST00000403076 POLR3AO14802 1390 aaPredicted RBP24.72■■□□□ 1.55
SDC1-203ENST00000403076 FOXO3O43524 673 aa24.71■■□□□ 1.55
SDC1-203ENST00000403076 TOM1O60784 492 aa24.71■■□□□ 1.55
SDC1-203ENST00000403076 PSME1Q06323 249 aa24.71■■□□□ 1.55
SDC1-203ENST00000403076 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.7■■□□□ 1.54
SDC1-203ENST00000403076 BRINP3Q76B58 766 aa24.69■■□□□ 1.54
SDC1-203ENST00000403076 CGNL1Q0VF96 1302 aa24.68■■□□□ 1.54
SDC1-203ENST00000403076 UBAP1LF5GYI3 381 aa24.68■■□□□ 1.54
SDC1-203ENST00000403076 IQSEC2Q5JU85 1478 aa24.68■■□□□ 1.54
SDC1-203ENST00000403076 KIF1AQ12756 1690 aa24.67■■□□□ 1.54
SDC1-203ENST00000403076 AKAP12Q02952 1782 aa24.66■■□□□ 1.54
SDC1-203ENST00000403076 ANP32CO43423 234 aa24.66■■□□□ 1.54
SDC1-203ENST00000403076 USP6P35125 1406 aa24.66■■□□□ 1.54
SDC1-203ENST00000403076 EDC4Q6P2E9 1401 aaKnown RBP24.66■■□□□ 1.54
SDC1-203ENST00000403076 CC2D1BQ5T0F9 858 aaKnown RBP24.66■■□□□ 1.54
SDC1-203ENST00000403076 PAK3O75914 559 aaPredicted RBP24.65■■□□□ 1.54
SDC1-203ENST00000403076 XPCQ01831 940 aaPredicted RBP24.65■■□□□ 1.54
SDC1-203ENST00000403076 KRT28Q7Z3Y7 464 aa24.65■■□□□ 1.54
SDC1-203ENST00000403076 NPHP3Q7Z494 1330 aa24.64■■□□□ 1.54
SDC1-203ENST00000403076 TTC21BQ7Z4L5 1316 aa24.64■■□□□ 1.54
SDC1-203ENST00000403076 SCAF1Q9H7N4 1312 aaKnown RBP24.64■■□□□ 1.54
SDC1-203ENST00000403076 PIP4K2BP78356 416 aa24.63■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms