RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 TRPM2O94759 1503 aa26.76■■□□□ 1.87
CTCF-202ENST00000401394 PTPRTO14522 1441 aa26.75■■□□□ 1.87
CTCF-202ENST00000401394 SPHKAPQ2M3C7 1700 aa26.74■■□□□ 1.87
CTCF-202ENST00000401394 CEP152O94986 1710 aa26.73■■□□□ 1.87
CTCF-202ENST00000401394 PMFBP1Q8TBY8 1022 aa26.73■■□□□ 1.87
CTCF-202ENST00000401394 KDM5AP29375 1690 aaKnown RBP26.73■■□□□ 1.87
CTCF-202ENST00000401394 POLR3AO14802 1390 aaPredicted RBP26.73■■□□□ 1.87
CTCF-202ENST00000401394 UPF2Q9HAU5 1272 aaKnown RBP26.72■■□□□ 1.87
CTCF-202ENST00000401394 U2SURPO15042 1029 aaKnown RBP26.71■■□□□ 1.87
CTCF-202ENST00000401394 FTSJ3Q8IY81 847 aaKnown RBP26.71■■□□□ 1.87
CTCF-202ENST00000401394 XRCC6P12956 609 aaKnown RBP eCLIP26.71■■□□□ 1.87
CTCF-202ENST00000401394 EXOSC9Q06265 439 aaKnown RBP26.7■■□□□ 1.87
CTCF-202ENST00000401394 CABP2Q9NPB3 220 aa26.7■■□□□ 1.87
CTCF-202ENST00000401394 NOS1P29475 1434 aa26.7■■□□□ 1.86
CTCF-202ENST00000401394 ABCC1P33527 1531 aa26.7■■□□□ 1.86
CTCF-202ENST00000401394 FAM43AQ8N2R8 423 aa26.7■■□□□ 1.86
CTCF-202ENST00000401394 FBLN1P23142 703 aa26.68■■□□□ 1.86
CTCF-202ENST00000401394 MVPQ14764 893 aaKnown RBP26.68■■□□□ 1.86
CTCF-202ENST00000401394 ITPRIPQ8IWB1 547 aa26.68■■□□□ 1.86
CTCF-202ENST00000401394 CFAP65Q6ZU64 1925 aaKnown RBP26.68■■□□□ 1.86
CTCF-202ENST00000401394 RWDD1Q9H446 243 aaPredicted RBP26.68■■□□□ 1.86
CTCF-202ENST00000401394 SMC4Q9NTJ3 1288 aa26.68■■□□□ 1.86
CTCF-202ENST00000401394 PHF23Q9BUL5 403 aaPredicted RBP26.67■■□□□ 1.86
CTCF-202ENST00000401394 FOXD4L1Q9NU39 408 aa26.67■■□□□ 1.86
CTCF-202ENST00000401394 ABCA6Q8N139 1617 aa26.67■■□□□ 1.86
CTCF-202ENST00000401394 TRIM27P14373 513 aa26.67■■□□□ 1.86
CTCF-202ENST00000401394 GGT6Q6P531 493 aa26.66■■□□□ 1.86
CTCF-202ENST00000401394 C22orf23Q9BZE7 217 aa26.66■■□□□ 1.86
CTCF-202ENST00000401394 SSH1Q8WYL5 1049 aa26.66■■□□□ 1.86
CTCF-202ENST00000401394 DZIP1LQ8IYY4 767 aaKnown RBP26.65■■□□□ 1.86
CTCF-202ENST00000401394 GGNBP2Q9H3C7 697 aa26.65■■□□□ 1.86
CTCF-202ENST00000401394 MCM4P33991 863 aa26.64■■□□□ 1.85
CTCF-202ENST00000401394 KANK1Q14678 1352 aa26.63■■□□□ 1.85
CTCF-202ENST00000401394 STK26Q9P289 416 aa26.63■■□□□ 1.85
CTCF-202ENST00000401394 ZFYVE16Q7Z3T8 1539 aa26.63■■□□□ 1.85
CTCF-202ENST00000401394 ZKSCAN2Q63HK3 967 aa26.62■■□□□ 1.85
CTCF-202ENST00000401394 NOB1Q9ULX3 412 aaKnown RBP26.62■■□□□ 1.85
CTCF-202ENST00000401394 WDR63Q8IWG1 891 aa26.61■■□□□ 1.85
CTCF-202ENST00000401394 SHPRHQ149N8 1683 aa26.61■■□□□ 1.85
CTCF-202ENST00000401394 LNPKQ9C0E8 428 aa26.6■■□□□ 1.85
CTCF-202ENST00000401394 TMEM57Q8N5G2 664 aa26.59■■□□□ 1.85
CTCF-202ENST00000401394 VIRMAQ69YN4 1812 aaKnown RBP26.59■■□□□ 1.85
CTCF-202ENST00000401394 IQSEC2Q5JU85 1478 aa26.58■■□□□ 1.85
CTCF-202ENST00000401394 C1orf115Q9H7X2 142 aa26.58■■□□□ 1.84
CTCF-202ENST00000401394 MAP3K4Q9Y6R4 1608 aa26.57■■□□□ 1.84
CTCF-202ENST00000401394 TRAK2O60296 914 aa26.57■■□□□ 1.84
CTCF-202ENST00000401394 MYH16Q9H6N6 1097 aa26.56■■□□□ 1.84
CTCF-202ENST00000401394 TRIM35Q9UPQ4 493 aa26.56■■□□□ 1.84
CTCF-202ENST00000401394 GOLGA6L3A6NEY3 463 aa26.56■■□□□ 1.84
CTCF-202ENST00000401394 CFAP53Q96M91 514 aa26.55■■□□□ 1.84
CTCF-202ENST00000401394 RTEL1-TNFRSF6BF6WH68 1400 aa26.55■■□□□ 1.84
CTCF-202ENST00000401394 NINLQ9Y2I6 1382 aa26.55■■□□□ 1.84
CTCF-202ENST00000401394 STAC3Q96MF2 364 aa26.55■■□□□ 1.84
CTCF-202ENST00000401394 NGEFQ8N5V2 710 aa26.53■■□□□ 1.84
CTCF-202ENST00000401394 MROH2AA6NES4 1674 aa26.53■■□□□ 1.84
CTCF-202ENST00000401394 ZNF518AQ6AHZ1 1483 aa26.53■■□□□ 1.84
CTCF-202ENST00000401394 THUMPD2Q9BTF0 503 aaKnown RBP26.52■■□□□ 1.84
CTCF-202ENST00000401394 ELL2O00472 640 aaPredicted RBP26.52■■□□□ 1.84
CTCF-202ENST00000401394 CD2BP2O95400 341 aaKnown RBP26.52■■□□□ 1.84
CTCF-202ENST00000401394 TMPOP42166 694 aaKnown RBP26.52■■□□□ 1.84
CTCF-202ENST00000401394 RBM42Q9BTD8 480 aaKnown RBP26.52■■□□□ 1.84
CTCF-202ENST00000401394 C14orf93Q9H972 538 aaKnown RBP26.52■■□□□ 1.84
CTCF-202ENST00000401394 CD109Q6YHK3 1445 aa26.51■■□□□ 1.83
CTCF-202ENST00000401394 FANCAO15360 1455 aa26.5■■□□□ 1.83
CTCF-202ENST00000401394 ATF7IPQ6VMQ6 1270 aa26.49■■□□□ 1.83
CTCF-202ENST00000401394 ARAP3Q8WWN8 1544 aa26.49■■□□□ 1.83
CTCF-202ENST00000401394 L1TD1Q5T7N2 865 aaKnown RBP26.49■■□□□ 1.83
CTCF-202ENST00000401394 TET3O43151 1660 aa26.49■■□□□ 1.83
CTCF-202ENST00000401394 ATP7AQ04656 1500 aa26.49■■□□□ 1.83
CTCF-202ENST00000401394 FSD2A1L4K1 749 aa26.49■■□□□ 1.83
CTCF-202ENST00000401394 RIPK4P57078 832 aa26.48■■□□□ 1.83
CTCF-202ENST00000401394 ZNF692Q9BU19 519 aaPredicted RBP26.48■■□□□ 1.83
CTCF-202ENST00000401394 RSPH6AQ9H0K4 717 aa26.48■■□□□ 1.83
CTCF-202ENST00000401394 PLEKHF1Q96S99 279 aa26.48■■□□□ 1.83
CTCF-202ENST00000401394 CHMP5Q9NZZ3 219 aa26.48■■□□□ 1.83
CTCF-202ENST00000401394 SRPK2P78362 688 aaKnown RBP26.47■■□□□ 1.83
CTCF-202ENST00000401394 OSCARQ8IYS5 282 aa26.47■■□□□ 1.83
CTCF-202ENST00000401394 CCDC27Q2M243 656 aa26.46■■□□□ 1.83
CTCF-202ENST00000401394 GAS2L3Q86XJ1 694 aa26.46■■□□□ 1.83
CTCF-202ENST00000401394 NAP1L5Q96NT1 182 aaPredicted RBP26.46■■□□□ 1.83
CTCF-202ENST00000401394 MYOM2P54296 1465 aa26.44■■□□□ 1.82
CTCF-202ENST00000401394 HSCBQ8IWL3 235 aa26.44■■□□□ 1.82
CTCF-202ENST00000401394 MINK1Q8N4C8 1332 aaPredicted RBP26.43■■□□□ 1.82
CTCF-202ENST00000401394 ZBTB40Q9NUA8 1239 aa26.43■■□□□ 1.82
CTCF-202ENST00000401394 ADGRL1O94910 1474 aa26.43■■□□□ 1.82
CTCF-202ENST00000401394 MROH1Q8NDA8 1641 aa26.43■■□□□ 1.82
CTCF-202ENST00000401394 ERBB4Q15303 1308 aa26.43■■□□□ 1.82
CTCF-202ENST00000401394 TNPO1Q92973 898 aaKnown RBP26.41■■□□□ 1.82
CTCF-202ENST00000401394 DDX19BQ9UMR2 479 aa26.41■■□□□ 1.82
CTCF-202ENST00000401394 DEPDC5O75140 1603 aa26.41■■□□□ 1.82
CTCF-202ENST00000401394 HDAC1Q13547 482 aaPredicted RBP26.4■■□□□ 1.82
CTCF-202ENST00000401394 SMC5Q8IY18 1101 aa26.4■■□□□ 1.82
CTCF-202ENST00000401394 ANKRD45Q5TZF3 282 aa26.4■■□□□ 1.82
CTCF-202ENST00000401394 UBE2Q2Q8WVN8 375 aa26.4■■□□□ 1.82
CTCF-202ENST00000401394 VWDEQ8N2E2 1590 aa26.39■■□□□ 1.82
CTCF-202ENST00000401394 A0A1W2PP64 1363 aa26.39■■□□□ 1.81
CTCF-202ENST00000401394 SBNO2Q9Y2G9 1366 aa26.39■■□□□ 1.81
CTCF-202ENST00000401394 HMOX1P09601 288 aa26.39■■□□□ 1.81
CTCF-202ENST00000401394 TSPYL6Q8N831 410 aa26.39■■□□□ 1.81
CTCF-202ENST00000401394 ABCA9Q8IUA7 1624 aa26.39■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms