RNA–Protein interactions for RNA: ENST00000397099.1

SEC13-204, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 4

Gene SEC13, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-204ENST00000397099 CDC42BPGQ6DT37 1551 aa20.31■□□□□ 0.84
SEC13-204ENST00000397099 SHPRHQ149N8 1683 aa20.31■□□□□ 0.84
SEC13-204ENST00000397099 LRP6O75581 1613 aa20.31■□□□□ 0.84
SEC13-204ENST00000397099 DDX17Q92841 729 aaKnown RBP20.3■□□□□ 0.84
SEC13-204ENST00000397099 STK26Q9P289 416 aa20.3■□□□□ 0.84
SEC13-204ENST00000397099 NHSL1Q5SYE7 1610 aa20.3■□□□□ 0.84
SEC13-204ENST00000397099 DCAF11Q8TEB1 546 aa20.29■□□□□ 0.84
SEC13-204ENST00000397099 LRRC59Q96AG4 307 aaKnown RBP20.28■□□□□ 0.84
SEC13-204ENST00000397099 C1orf167Q5SNV9 1468 aa20.28■□□□□ 0.84
SEC13-204ENST00000397099 CFAP70Q5T0N1 1121 aa20.27■□□□□ 0.84
SEC13-204ENST00000397099 TMEM132EQ6IEE7 984 aa20.27■□□□□ 0.84
SEC13-204ENST00000397099 ZNF772Q68DY9 489 aaPredicted RBP20.25■□□□□ 0.83
SEC13-204ENST00000397099 DLC1Q96QB1 1528 aa20.25■□□□□ 0.83
SEC13-204ENST00000397099 ORAI2Q96SN7 254 aa20.24■□□□□ 0.83
SEC13-204ENST00000397099 KDM2AQ9Y2K7 1162 aa20.23■□□□□ 0.83
SEC13-204ENST00000397099 WAPLQ7Z5K2 1190 aa20.22■□□□□ 0.83
SEC13-204ENST00000397099 ADGRB1O14514 1584 aa20.21■□□□□ 0.83
SEC13-204ENST00000397099 KIAA1210Q9ULL0 1709 aa20.21■□□□□ 0.83
SEC13-204ENST00000397099 PNPLA6Q8IY17 1366 aa20.21■□□□□ 0.83
SEC13-204ENST00000397099 ESCO1Q5FWF5 840 aa20.2■□□□□ 0.82
SEC13-204ENST00000397099 FMN2Q9NZ56 1722 aa20.19■□□□□ 0.82
SEC13-204ENST00000397099 NUTM2FA1L443 756 aa20.18■□□□□ 0.82
SEC13-204ENST00000397099 TRIM26Q12899 539 aaPredicted RBP20.18■□□□□ 0.82
SEC13-204ENST00000397099 POGKQ9P215 609 aa20.18■□□□□ 0.82
SEC13-204ENST00000397099 NPHP3Q7Z494 1330 aa20.18■□□□□ 0.82
SEC13-204ENST00000397099 C8orf37Q96NL8 207 aa20.17■□□□□ 0.82
SEC13-204ENST00000397099 AFF2P51816 1311 aa20.17■□□□□ 0.82
SEC13-204ENST00000397099 PLEKHH1Q9ULM0 1364 aa20.17■□□□□ 0.82
SEC13-204ENST00000397099 PRAM1Q96QH2 718 aa20.16■□□□□ 0.82
SEC13-204ENST00000397099 SOS2Q07890 1332 aaPredicted RBP20.16■□□□□ 0.82
SEC13-204ENST00000397099 KIF1AQ12756 1690 aa20.16■□□□□ 0.82
SEC13-204ENST00000397099 ADAMTS2O95450 1211 aa20.15■□□□□ 0.82
SEC13-204ENST00000397099 EIF3AQ14152 1382 aaKnown RBP20.15■□□□□ 0.82
SEC13-204ENST00000397099 ADGRB2O60241 1585 aa20.15■□□□□ 0.82
SEC13-204ENST00000397099 RXRBP28702 533 aa20.14■□□□□ 0.81
SEC13-204ENST00000397099 FOXO3O43524 673 aa20.12■□□□□ 0.81
SEC13-204ENST00000397099 XPCQ01831 940 aaPredicted RBP20.12■□□□□ 0.81
SEC13-204ENST00000397099 TRAK1Q9UPV9 953 aa20.12■□□□□ 0.81
SEC13-204ENST00000397099 ANKARQ7Z5J8 1434 aa20.11■□□□□ 0.81
SEC13-204ENST00000397099 NGLY1Q96IV0 654 aa20.11■□□□□ 0.81
SEC13-204ENST00000397099 SAFB2Q14151 953 aaKnown RBP eCLIP20.1■□□□□ 0.81
SEC13-204ENST00000397099 ARHGEF28Q8N1W1 1705 aaKnown RBP20.09■□□□□ 0.81
SEC13-204ENST00000397099 PXDNQ92626 1479 aa20.07■□□□□ 0.8
SEC13-204ENST00000397099 COL22A1Q8NFW1 1626 aaPredicted RBP20.07■□□□□ 0.8
SEC13-204ENST00000397099 QTRT2Q9H974 415 aaKnown RBP20.07■□□□□ 0.8
SEC13-204ENST00000397099 RGPD8O14715 1765 aaPredicted RBP20.06■□□□□ 0.8
SEC13-204ENST00000397099 PSME1Q06323 249 aa20.05■□□□□ 0.8
SEC13-204ENST00000397099 L3MBTL2Q969R5 705 aa20.05■□□□□ 0.8
SEC13-204ENST00000397099 PHF8Q9UPP1 1060 aa20.04■□□□□ 0.8
SEC13-204ENST00000397099 TULP4Q9NRJ4 1543 aa20.03■□□□□ 0.8
SEC13-204ENST00000397099 WASLO00401 505 aaPredicted RBP20.03■□□□□ 0.8
SEC13-204ENST00000397099 USP21Q9UK80 565 aa20.03■□□□□ 0.8
SEC13-204ENST00000397099 RBM6P78332 1123 aaKnown RBP20.02■□□□□ 0.8
SEC13-204ENST00000397099 CDK12Q9NYV4 1490 aaPredicted RBP20.02■□□□□ 0.8
SEC13-204ENST00000397099 ITSN1Q15811 1721 aa20.02■□□□□ 0.79
SEC13-204ENST00000397099 MINK1Q8N4C8 1332 aaPredicted RBP20.02■□□□□ 0.79
SEC13-204ENST00000397099 NEUROD1Q13562 356 aa20.01■□□□□ 0.79
SEC13-204ENST00000397099 KRT28Q7Z3Y7 464 aa20.01■□□□□ 0.79
SEC13-204ENST00000397099 SIN3AQ96ST3 1273 aa20.01■□□□□ 0.79
SEC13-204ENST00000397099 USP32Q8NFA0 1604 aa20■□□□□ 0.79
SEC13-204ENST00000397099 HIRIP3Q9BW71 556 aaPredicted RBP19.99■□□□□ 0.79
SEC13-204ENST00000397099 SPATA31A3Q5VYP0 1347 aa19.99■□□□□ 0.79
SEC13-204ENST00000397099 TRPM1Q7Z4N2 1603 aa19.98■□□□□ 0.79
SEC13-204ENST00000397099 SBNO1A3KN83 1393 aa19.98■□□□□ 0.79
SEC13-204ENST00000397099 TRPC5Q9UL62 973 aaPredicted RBP19.98■□□□□ 0.79
SEC13-204ENST00000397099 RGS12O14924 1447 aa19.97■□□□□ 0.79
SEC13-204ENST00000397099 PLEKHG5O94827 1062 aa19.97■□□□□ 0.79
SEC13-204ENST00000397099 HAP1P54257 671 aaPredicted RBP19.97■□□□□ 0.79
SEC13-204ENST00000397099 NBPF1Q3BBV0 1214 aa19.97■□□□□ 0.79
SEC13-204ENST00000397099 FNBP4Q8N3X1 1017 aaPredicted RBP19.97■□□□□ 0.79
SEC13-204ENST00000397099 UPF1Q92900 1129 aaKnown RBP eCLIP19.97■□□□□ 0.79
SEC13-204ENST00000397099 ARHGEF10O15013 1369 aa19.96■□□□□ 0.79
SEC13-204ENST00000397099 GPRASP1Q5JY77 1395 aa19.96■□□□□ 0.79
SEC13-204ENST00000397099 TNS3Q68CZ2 1445 aa19.96■□□□□ 0.79
SEC13-204ENST00000397099 LMOD2Q6P5Q4 547 aa19.96■□□□□ 0.79
SEC13-204ENST00000397099 MARF1Q9Y4F3 1742 aaKnown RBP19.96■□□□□ 0.79
SEC13-204ENST00000397099 PMFBP1Q8TBY8 1022 aa19.95■□□□□ 0.78
SEC13-204ENST00000397099 CENPJQ9HC77 1338 aaPredicted RBP19.95■□□□□ 0.78
SEC13-204ENST00000397099 TONSLQ96HA7 1378 aa19.94■□□□□ 0.78
SEC13-204ENST00000397099 ROCK2O75116 1388 aaKnown RBP19.93■□□□□ 0.78
SEC13-204ENST00000397099 ATP7BP35670 1465 aa19.92■□□□□ 0.78
SEC13-204ENST00000397099 NUDT16Q96DE0 195 aaKnown RBP19.92■□□□□ 0.78
SEC13-204ENST00000397099 CDK19Q9BWU1 502 aa19.92■□□□□ 0.78
SEC13-204ENST00000397099 QRICH2Q9H0J4 1663 aa19.91■□□□□ 0.78
SEC13-204ENST00000397099 NGDNQ8NEJ9 315 aaKnown RBP19.91■□□□□ 0.78
SEC13-204ENST00000397099 PRR36Q9H6K5 1346 aa19.91■□□□□ 0.78
SEC13-204ENST00000397099 ATRNO75882 1429 aa19.91■□□□□ 0.78
SEC13-204ENST00000397099 CABLES1Q8TDN4 633 aa19.9■□□□□ 0.78
SEC13-204ENST00000397099 CCDC61Q9Y6R9 512 aa19.9■□□□□ 0.78
SEC13-204ENST00000397099 TRPM3Q9HCF6 1732 aaPredicted RBP19.89■□□□□ 0.77
SEC13-204ENST00000397099 TOPAZ1Q8N9V7 1692 aa19.88■□□□□ 0.77
SEC13-204ENST00000397099 BCL9LQ86UU0 1499 aa19.88■□□□□ 0.77
SEC13-204ENST00000397099 CLSPNQ9HAW4 1339 aa19.86■□□□□ 0.77
SEC13-204ENST00000397099 PLEKHG3A1L390 1219 aa19.86■□□□□ 0.77
SEC13-204ENST00000397099 UNC5CLQ8IV45 518 aa19.86■□□□□ 0.77
SEC13-204ENST00000397099 ALS2Q96Q42 1657 aa19.86■□□□□ 0.77
SEC13-204ENST00000397099 POLR3AO14802 1390 aaPredicted RBP19.85■□□□□ 0.77
SEC13-204ENST00000397099 ATAD2Q6PL18 1390 aa19.85■□□□□ 0.77
SEC13-204ENST00000397099 EVC2Q86UK5 1308 aa19.85■□□□□ 0.77
SEC13-204ENST00000397099 SRPK2P78362 688 aaKnown RBP19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms