RNA–Protein interactions for RNA: ENST00000396548.5

TRIM39-204, Transcript of tripartite motif containing 39, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TRIM39, Length 3,198 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-204ENST00000396548 PTCH1Q13635 1447 aa17.52■□□□□ 0.4
TRIM39-204ENST00000396548 PIK3R4Q99570 1358 aa17.52■□□□□ 0.4
TRIM39-204ENST00000396548 WAPLQ7Z5K2 1190 aa17.52■□□□□ 0.39
TRIM39-204ENST00000396548 ANKLE2Q86XL3 938 aa17.51■□□□□ 0.39
TRIM39-204ENST00000396548 SLC26A8Q96RN1 970 aa17.51■□□□□ 0.39
TRIM39-204ENST00000396548 USP32Q8NFA0 1604 aa17.5■□□□□ 0.39
TRIM39-204ENST00000396548 KTN1Q86UP2 1357 aaKnown RBP17.49■□□□□ 0.39
TRIM39-204ENST00000396548 POGKQ9P215 609 aa17.49■□□□□ 0.39
TRIM39-204ENST00000396548 PARD3Q8TEW0 1356 aa17.49■□□□□ 0.39
TRIM39-204ENST00000396548 SAFB2Q14151 953 aaKnown RBP eCLIP17.48■□□□□ 0.39
TRIM39-204ENST00000396548 BCANQ96GW7 911 aa17.48■□□□□ 0.39
TRIM39-204ENST00000396548 NPHP4O75161 1426 aaPredicted RBP17.48■□□□□ 0.39
TRIM39-204ENST00000396548 MINK1Q8N4C8 1332 aaPredicted RBP17.47■□□□□ 0.39
TRIM39-204ENST00000396548 CD163L1Q9NR16 1453 aa17.47■□□□□ 0.39
TRIM39-204ENST00000396548 NPC1L1Q9UHC9 1359 aa17.46■□□□□ 0.39
TRIM39-204ENST00000396548 NWD1Q149M9 1564 aa17.46■□□□□ 0.39
TRIM39-204ENST00000396548 CARD14Q9BXL6 1004 aa17.46■□□□□ 0.39
TRIM39-204ENST00000396548 LMTK3Q96Q04 1460 aa17.46■□□□□ 0.39
TRIM39-204ENST00000396548 NINLQ9Y2I6 1382 aa17.46■□□□□ 0.39
TRIM39-204ENST00000396548 TOPAZ1Q8N9V7 1692 aa17.45■□□□□ 0.38
TRIM39-204ENST00000396548 AMER1Q5JTC6 1135 aaPredicted RBP17.45■□□□□ 0.38
TRIM39-204ENST00000396548 CABP2Q9NPB3 220 aa17.45■□□□□ 0.38
TRIM39-204ENST00000396548 AMOTL2Q9Y2J4 779 aa17.45■□□□□ 0.38
TRIM39-204ENST00000396548 CDK19Q9BWU1 502 aa17.44■□□□□ 0.38
TRIM39-204ENST00000396548 ATAD2Q6PL18 1390 aa17.44■□□□□ 0.38
TRIM39-204ENST00000396548 CCDC184Q52MB2 194 aa17.43■□□□□ 0.38
TRIM39-204ENST00000396548 SLC12A5Q9H2X9 1139 aa17.43■□□□□ 0.38
TRIM39-204ENST00000396548 STRCQ7RTU9 1775 aa17.43■□□□□ 0.38
TRIM39-204ENST00000396548 ANKRD36BQ8N2N9 1353 aa17.42■□□□□ 0.38
TRIM39-204ENST00000396548 RALBP1Q15311 655 aa17.42■□□□□ 0.38
TRIM39-204ENST00000396548 NCKAP5LQ9HCH0 1330 aa17.42■□□□□ 0.38
TRIM39-204ENST00000396548 WASLO00401 505 aaPredicted RBP17.42■□□□□ 0.38
TRIM39-204ENST00000396548 NALCNQ8IZF0 1738 aa17.4■□□□□ 0.38
TRIM39-204ENST00000396548 ATP7BP35670 1465 aa17.4■□□□□ 0.38
TRIM39-204ENST00000396548 AKAP12Q02952 1782 aa17.39■□□□□ 0.38
TRIM39-204ENST00000396548 KCNA6P17658 529 aa17.38■□□□□ 0.37
TRIM39-204ENST00000396548 SRPK2P78362 688 aaKnown RBP17.38■□□□□ 0.37
TRIM39-204ENST00000396548 KNSTRNQ9Y448 316 aa17.38■□□□□ 0.37
TRIM39-204ENST00000396548 STRCP1A6NGW2 1772 aa17.38■□□□□ 0.37
TRIM39-204ENST00000396548 A0A1W2PP64 1363 aa17.38■□□□□ 0.37
TRIM39-204ENST00000396548 MYBBP1AQ9BQG0 1328 aaKnown RBP17.38■□□□□ 0.37
TRIM39-204ENST00000396548 NSD3Q9BZ95 1437 aa17.38■□□□□ 0.37
TRIM39-204ENST00000396548 MON2Q7Z3U7 1717 aa17.38■□□□□ 0.37
TRIM39-204ENST00000396548 FMN2Q9NZ56 1722 aa17.38■□□□□ 0.37
TRIM39-204ENST00000396548 ANKRD26Q9UPS8 1709 aa17.37■□□□□ 0.37
TRIM39-204ENST00000396548 CDC42BPGQ6DT37 1551 aa17.37■□□□□ 0.37
TRIM39-204ENST00000396548 CPSF1Q10570 1443 aaKnown RBP17.36■□□□□ 0.37
TRIM39-204ENST00000396548 TMC1Q8TDI8 760 aa17.36■□□□□ 0.37
TRIM39-204ENST00000396548 PRR36Q9H6K5 1346 aa17.35■□□□□ 0.37
TRIM39-204ENST00000396548 BRD4O60885 1362 aaPredicted RBP17.35■□□□□ 0.37
TRIM39-204ENST00000396548 CC2D1BQ5T0F9 858 aaKnown RBP17.35■□□□□ 0.37
TRIM39-204ENST00000396548 RGPD8O14715 1765 aaPredicted RBP17.34■□□□□ 0.37
TRIM39-204ENST00000396548 ITSN1Q15811 1721 aa17.34■□□□□ 0.37
TRIM39-204ENST00000396548 KIF20BQ96Q89 1820 aa17.34■□□□□ 0.37
TRIM39-204ENST00000396548 NRKQ7Z2Y5 1582 aa17.33■□□□□ 0.37
TRIM39-204ENST00000396548 PPIP5K1Q6PFW1 1433 aa17.33■□□□□ 0.37
TRIM39-204ENST00000396548 CABP1Q9NZU7 370 aa17.33■□□□□ 0.36
TRIM39-204ENST00000396548 NUDT16Q96DE0 195 aaKnown RBP17.32■□□□□ 0.36
TRIM39-204ENST00000396548 NKTRP30414 1462 aaKnown RBP17.31■□□□□ 0.36
TRIM39-204ENST00000396548 YTHDC1Q96MU7 727 aaKnown RBP17.31■□□□□ 0.36
TRIM39-204ENST00000396548 HSPA2P54652 639 aa17.3■□□□□ 0.36
TRIM39-204ENST00000396548 NSD2O96028 1365 aa17.3■□□□□ 0.36
TRIM39-204ENST00000396548 MRS2Q9HD23 443 aa17.3■□□□□ 0.36
TRIM39-204ENST00000396548 CNGB1Q14028 1251 aaPredicted RBP17.3■□□□□ 0.36
TRIM39-204ENST00000396548 NLRP13Q86W25 1043 aa17.3■□□□□ 0.36
TRIM39-204ENST00000396548 ANKARQ7Z5J8 1434 aa17.29■□□□□ 0.36
TRIM39-204ENST00000396548 CCDC61Q9Y6R9 512 aa17.29■□□□□ 0.36
TRIM39-204ENST00000396548 TERF2IPQ9NYB0 399 aa17.29■□□□□ 0.36
TRIM39-204ENST00000396548 ADGRL3Q9HAR2 1447 aa17.29■□□□□ 0.36
TRIM39-204ENST00000396548 PPP2R1AP30153 589 aa17.28■□□□□ 0.36
TRIM39-204ENST00000396548 PNISRQ8TF01 805 aaKnown RBP17.28■□□□□ 0.36
TRIM39-204ENST00000396548 CGNL1Q0VF96 1302 aa17.27■□□□□ 0.36
TRIM39-204ENST00000396548 PLEKHG3A1L390 1219 aa17.27■□□□□ 0.35
TRIM39-204ENST00000396548 XIRP1Q702N8 1843 aaKnown RBP17.26■□□□□ 0.35
TRIM39-204ENST00000396548 EDC4Q6P2E9 1401 aaKnown RBP17.26■□□□□ 0.35
TRIM39-204ENST00000396548 HDGFL2Q7Z4V5 671 aaPredicted RBP17.25■□□□□ 0.35
TRIM39-204ENST00000396548 SSH2Q76I76 1423 aa17.25■□□□□ 0.35
TRIM39-204ENST00000396548 POLR3AO14802 1390 aaPredicted RBP17.24■□□□□ 0.35
TRIM39-204ENST00000396548 FYB1O15117 783 aa17.23■□□□□ 0.35
TRIM39-204ENST00000396548 NCOA3Q9Y6Q9 1424 aa17.23■□□□□ 0.35
TRIM39-204ENST00000396548 SHPRHQ149N8 1683 aa17.22■□□□□ 0.35
TRIM39-204ENST00000396548 INSRP06213 1382 aa17.21■□□□□ 0.35
TRIM39-204ENST00000396548 USP6P35125 1406 aa17.2■□□□□ 0.34
TRIM39-204ENST00000396548 USP54Q70EL1 1684 aa17.2■□□□□ 0.34
TRIM39-204ENST00000396548 ZNF692Q9BU19 519 aaPredicted RBP17.2■□□□□ 0.34
TRIM39-204ENST00000396548 ACEP12821 1306 aa17.2■□□□□ 0.34
TRIM39-204ENST00000396548 RBM33Q96EV2 1170 aaKnown RBP17.19■□□□□ 0.34
TRIM39-204ENST00000396548 MARF1Q9Y4F3 1742 aaKnown RBP17.19■□□□□ 0.34
TRIM39-204ENST00000396548 MORC1Q86VD1 984 aa17.18■□□□□ 0.34
TRIM39-204ENST00000396548 FAM9BQ8IZU0 186 aa17.18■□□□□ 0.34
TRIM39-204ENST00000396548 NUTM2FA1L443 756 aa17.17■□□□□ 0.34
TRIM39-204ENST00000396548 CENPBP07199 599 aaPredicted RBP17.16■□□□□ 0.34
TRIM39-204ENST00000396548 PIK3C2AO00443 1686 aa17.16■□□□□ 0.34
TRIM39-204ENST00000396548 DCCP43146 1447 aa17.16■□□□□ 0.34
TRIM39-204ENST00000396548 GGNBP2Q9H3C7 697 aa17.16■□□□□ 0.34
TRIM39-204ENST00000396548 BLMP54132 1417 aaPredicted RBP17.16■□□□□ 0.34
TRIM39-204ENST00000396548 PROSER2Q86WR7 435 aaPredicted RBP17.15■□□□□ 0.34
TRIM39-204ENST00000396548 COL3A1P02461 1466 aaPredicted RBP17.15■□□□□ 0.34
TRIM39-204ENST00000396548 TMEM94Q12767 1356 aa17.14■□□□□ 0.34
TRIM39-204ENST00000396548 LRRC7Q96NW7 1537 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms