RNA–Protein interactions for RNA: ENST00000396342.6

DDR1-229, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

TSL 3

Gene DDR1, Length 675 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-229ENST00000396342 TMEM132EQ6IEE7 984 aa24.06■■□□□ 1.44
DDR1-229ENST00000396342 ABCC11Q96J66 1382 aa24.05■■□□□ 1.44
DDR1-229ENST00000396342 SPATA31E1Q6ZUB1 1445 aa24.05■■□□□ 1.44
DDR1-229ENST00000396342 WAPLQ7Z5K2 1190 aa24.05■■□□□ 1.44
DDR1-229ENST00000396342 DHX57Q6P158 1386 aaKnown RBP24.04■■□□□ 1.44
DDR1-229ENST00000396342 NALCNQ8IZF0 1738 aa24.04■■□□□ 1.44
DDR1-229ENST00000396342 NHSL1Q5SYE7 1610 aa24.03■■□□□ 1.44
DDR1-229ENST00000396342 NUTM2FA1L443 756 aa24.03■■□□□ 1.44
DDR1-229ENST00000396342 PPLO60437 1756 aa24.03■■□□□ 1.44
DDR1-229ENST00000396342 FOXO3O43524 673 aa24.02■■□□□ 1.44
DDR1-229ENST00000396342 USP21Q9UK80 565 aa24.01■■□□□ 1.43
DDR1-229ENST00000396342 SIRT1Q96EB6 747 aa24■■□□□ 1.43
DDR1-229ENST00000396342 C14orf93Q9H972 538 aaKnown RBP24■■□□□ 1.43
DDR1-229ENST00000396342 POGKQ9P215 609 aa24■■□□□ 1.43
DDR1-229ENST00000396342 CDK12Q9NYV4 1490 aaPredicted RBP24■■□□□ 1.43
DDR1-229ENST00000396342 HAP1P54257 671 aaPredicted RBP23.99■■□□□ 1.43
DDR1-229ENST00000396342 TRPC5Q9UL62 973 aaPredicted RBP23.99■■□□□ 1.43
DDR1-229ENST00000396342 TECPR2O15040 1411 aa23.99■■□□□ 1.43
DDR1-229ENST00000396342 PIK3C2GO75747 1445 aa23.99■■□□□ 1.43
DDR1-229ENST00000396342 PSME1Q06323 249 aa23.98■■□□□ 1.43
DDR1-229ENST00000396342 RAB3GAP2Q9H2M9 1393 aa23.98■■□□□ 1.43
DDR1-229ENST00000396342 YTHDC2Q9H6S0 1430 aaKnown RBP23.98■■□□□ 1.43
DDR1-229ENST00000396342 CDC42BPGQ6DT37 1551 aa23.98■■□□□ 1.43
DDR1-229ENST00000396342 UPF1Q92900 1129 aaKnown RBP eCLIP23.96■■□□□ 1.43
DDR1-229ENST00000396342 XPCQ01831 940 aaPredicted RBP23.95■■□□□ 1.42
DDR1-229ENST00000396342 CFAP70Q5T0N1 1121 aa23.95■■□□□ 1.42
DDR1-229ENST00000396342 STAC3Q96MF2 364 aa23.95■■□□□ 1.42
DDR1-229ENST00000396342 SETD1AO15047 1707 aaKnown RBP23.95■■□□□ 1.42
DDR1-229ENST00000396342 SAFB2Q14151 953 aaKnown RBP eCLIP23.92■■□□□ 1.42
DDR1-229ENST00000396342 KRT28Q7Z3Y7 464 aa23.91■■□□□ 1.42
DDR1-229ENST00000396342 PRAM1Q96QH2 718 aa23.91■■□□□ 1.42
DDR1-229ENST00000396342 KDM2AQ9Y2K7 1162 aa23.91■■□□□ 1.42
DDR1-229ENST00000396342 FNBP4Q8N3X1 1017 aaPredicted RBP23.9■■□□□ 1.42
DDR1-229ENST00000396342 PHF8Q9UPP1 1060 aa23.9■■□□□ 1.42
DDR1-229ENST00000396342 PLEKHH1Q9ULM0 1364 aa23.9■■□□□ 1.42
DDR1-229ENST00000396342 MYOM2P54296 1465 aa23.89■■□□□ 1.42
DDR1-229ENST00000396342 HRCP23327 699 aa23.89■■□□□ 1.41
DDR1-229ENST00000396342 LMOD2Q6P5Q4 547 aa23.89■■□□□ 1.41
DDR1-229ENST00000396342 DCAF11Q8TEB1 546 aa23.89■■□□□ 1.41
DDR1-229ENST00000396342 LAMC1P11047 1609 aa23.88■■□□□ 1.41
DDR1-229ENST00000396342 EIF3AQ14152 1382 aaKnown RBP23.86■■□□□ 1.41
DDR1-229ENST00000396342 ATAD2Q6PL18 1390 aa23.86■■□□□ 1.41
DDR1-229ENST00000396342 SPATA31A3Q5VYP0 1347 aa23.84■■□□□ 1.41
DDR1-229ENST00000396342 TRAK1Q9UPV9 953 aa23.84■■□□□ 1.41
DDR1-229ENST00000396342 PXDNQ92626 1479 aa23.83■■□□□ 1.41
DDR1-229ENST00000396342 RGS12O14924 1447 aa23.83■■□□□ 1.4
DDR1-229ENST00000396342 NRXN1Q9ULB1 1477 aa23.82■■□□□ 1.4
DDR1-229ENST00000396342 KNDC1Q76NI1 1749 aa23.81■■□□□ 1.4
DDR1-229ENST00000396342 IFT172Q9UG01 1749 aa23.81■■□□□ 1.4
DDR1-229ENST00000396342 ARHGEF10O15013 1369 aa23.8■■□□□ 1.4
DDR1-229ENST00000396342 GPRASP1Q5JY77 1395 aa23.8■■□□□ 1.4
DDR1-229ENST00000396342 PLEKHG5O94827 1062 aa23.8■■□□□ 1.4
DDR1-229ENST00000396342 UNC5CLQ8IV45 518 aa23.78■■□□□ 1.4
DDR1-229ENST00000396342 GJD4Q96KN9 370 aaPredicted RBP23.78■■□□□ 1.4
DDR1-229ENST00000396342 CCDC9Q9Y3X0 531 aaKnown RBP23.78■■□□□ 1.4
DDR1-229ENST00000396342 KIF1AQ12756 1690 aa23.78■■□□□ 1.4
DDR1-229ENST00000396342 PMFBP1Q8TBY8 1022 aa23.77■■□□□ 1.4
DDR1-229ENST00000396342 MINK1Q8N4C8 1332 aaPredicted RBP23.77■■□□□ 1.4
DDR1-229ENST00000396342 COL22A1Q8NFW1 1626 aaPredicted RBP23.77■■□□□ 1.4
DDR1-229ENST00000396342 ATRNO75882 1429 aa23.76■■□□□ 1.39
DDR1-229ENST00000396342 ANKARQ7Z5J8 1434 aa23.76■■□□□ 1.39
DDR1-229ENST00000396342 HIRIP3Q9BW71 556 aaPredicted RBP23.76■■□□□ 1.39
DDR1-229ENST00000396342 SBNO1A3KN83 1393 aa23.76■■□□□ 1.39
DDR1-229ENST00000396342 TNS3Q68CZ2 1445 aa23.76■■□□□ 1.39
DDR1-229ENST00000396342 NGDNQ8NEJ9 315 aaKnown RBP23.75■■□□□ 1.39
DDR1-229ENST00000396342 DLC1Q96QB1 1528 aa23.74■■□□□ 1.39
DDR1-229ENST00000396342 CCDC125Q86Z20 511 aa23.74■■□□□ 1.39
DDR1-229ENST00000396342 FMN2Q9NZ56 1722 aa23.73■■□□□ 1.39
DDR1-229ENST00000396342 WASLO00401 505 aaPredicted RBP23.72■■□□□ 1.39
DDR1-229ENST00000396342 PAK3O75914 559 aaPredicted RBP23.7■■□□□ 1.38
DDR1-229ENST00000396342 SF3B2Q13435 895 aaKnown RBP23.7■■□□□ 1.38
DDR1-229ENST00000396342 BCL9LQ86UU0 1499 aa23.69■■□□□ 1.38
DDR1-229ENST00000396342 A0A0G2JS52 829 aa23.69■■□□□ 1.38
DDR1-229ENST00000396342 MYT1Q01538 1121 aa23.69■■□□□ 1.38
DDR1-229ENST00000396342 CABLES1Q8TDN4 633 aa23.69■■□□□ 1.38
DDR1-229ENST00000396342 VPS72Q15906 364 aa23.66■■□□□ 1.38
DDR1-229ENST00000396342 ZRANB1Q9UGI0 708 aa23.66■■□□□ 1.38
DDR1-229ENST00000396342 ADGRB1O14514 1584 aa23.62■■□□□ 1.37
DDR1-229ENST00000396342 SLIT2O94813 1529 aa23.62■■□□□ 1.37
DDR1-229ENST00000396342 SEPT12Q8IYM1 358 aa23.61■■□□□ 1.37
DDR1-229ENST00000396342 NUDT16Q96DE0 195 aaKnown RBP23.61■■□□□ 1.37
DDR1-229ENST00000396342 RALGAPBQ86X10 1494 aa23.61■■□□□ 1.37
DDR1-229ENST00000396342 ADGRB2O60241 1585 aa23.61■■□□□ 1.37
DDR1-229ENST00000396342 TULP4Q9NRJ4 1543 aa23.6■■□□□ 1.37
DDR1-229ENST00000396342 USP32Q8NFA0 1604 aa23.59■■□□□ 1.37
DDR1-229ENST00000396342 FAM83GA6ND36 823 aa23.58■■□□□ 1.37
DDR1-229ENST00000396342 CDK19Q9BWU1 502 aa23.58■■□□□ 1.37
DDR1-229ENST00000396342 PRDM11Q9NQV5 511 aa23.58■■□□□ 1.37
DDR1-229ENST00000396342 BTG4Q9NY30 223 aa23.58■■□□□ 1.37
DDR1-229ENST00000396342 PRR36Q9H6K5 1346 aa23.57■■□□□ 1.36
DDR1-229ENST00000396342 CCDC61Q9Y6R9 512 aa23.56■■□□□ 1.36
DDR1-229ENST00000396342 SRPK2P78362 688 aaKnown RBP23.55■■□□□ 1.36
DDR1-229ENST00000396342 KRT27Q7Z3Y8 459 aa23.55■■□□□ 1.36
DDR1-229ENST00000396342 MARF1Q9Y4F3 1742 aaKnown RBP23.54■■□□□ 1.36
DDR1-229ENST00000396342 BLMP54132 1417 aaPredicted RBP23.52■■□□□ 1.36
DDR1-229ENST00000396342 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.51■■□□□ 1.35
DDR1-229ENST00000396342 ONECUT3O60422 494 aaPredicted RBP23.5■■□□□ 1.35
DDR1-229ENST00000396342 FAM98CQ17RN3 349 aaKnown RBP23.5■■□□□ 1.35
DDR1-229ENST00000396342 CENPJQ9HC77 1338 aaPredicted RBP23.5■■□□□ 1.35
DDR1-229ENST00000396342 EVA1CP58658 441 aa23.49■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms