RNA–Protein interactions for RNA: ENST00000395969.6

VPS41-203, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5 BASIC

Gene VPS41, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-203ENST00000395969 C11orf95C9JLR9 678 aaPredicted RBP7.38□□□□□ -1.23
VPS41-203ENST00000395969 KIF3BO15066 747 aa7.38□□□□□ -1.23
VPS41-203ENST00000395969 PER1O15534 1290 aaPredicted RBP7.38□□□□□ -1.23
VPS41-203ENST00000395969 MYT1LQ9UL68 1186 aa7.38□□□□□ -1.23
VPS41-203ENST00000395969 NSD2O96028 1365 aa7.38□□□□□ -1.23
VPS41-203ENST00000395969 SALL2Q9Y467 1007 aaPredicted RBP7.38□□□□□ -1.23
VPS41-203ENST00000395969 PHRF1Q9P1Y6 1649 aaKnown RBP7.37□□□□□ -1.23
VPS41-203ENST00000395969 RALBP1Q15311 655 aa7.37□□□□□ -1.23
VPS41-203ENST00000395969 ATP7BP35670 1465 aa7.37□□□□□ -1.23
VPS41-203ENST00000395969 CDCA8Q53HL2 280 aa7.36□□□□□ -1.23
VPS41-203ENST00000395969 PTCH1Q13635 1447 aa7.36□□□□□ -1.23
VPS41-203ENST00000395969 ABCC11Q96J66 1382 aa7.36□□□□□ -1.23
VPS41-203ENST00000395969 FAM69CQ0P6D2 419 aa7.36□□□□□ -1.23
VPS41-203ENST00000395969 PIK3R4Q99570 1358 aa7.36□□□□□ -1.23
VPS41-203ENST00000395969 PRKRIP1Q9H875 184 aaPredicted RBP7.36□□□□□ -1.23
VPS41-203ENST00000395969 CHD2O14647 1828 aaKnown RBP7.36□□□□□ -1.23
VPS41-203ENST00000395969 SMG6Q86US8 1419 aaKnown RBP7.35□□□□□ -1.23
VPS41-203ENST00000395969 DISP3Q9P2K9 1392 aa7.35□□□□□ -1.23
VPS41-203ENST00000395969 PLEKHG5O94827 1062 aa7.35□□□□□ -1.23
VPS41-203ENST00000395969 CEP170BQ9Y4F5 1589 aaPredicted RBP7.35□□□□□ -1.23
VPS41-203ENST00000395969 PLEKHG1Q9ULL1 1385 aa7.35□□□□□ -1.23
VPS41-203ENST00000395969 DCAF11Q8TEB1 546 aa7.34□□□□□ -1.23
VPS41-203ENST00000395969 MST1RQ04912 1400 aa7.34□□□□□ -1.23
VPS41-203ENST00000395969 CD163L1Q9NR16 1453 aa7.34□□□□□ -1.23
VPS41-203ENST00000395969 CYB5RLQ6IPT4 315 aa7.34□□□□□ -1.23
VPS41-203ENST00000395969 CARD11Q9BXL7 1154 aa7.34□□□□□ -1.23
VPS41-203ENST00000395969 VGFO15240 615 aaPredicted RBP7.33□□□□□ -1.24
VPS41-203ENST00000395969 RAPGEF3O95398 923 aa7.33□□□□□ -1.24
VPS41-203ENST00000395969 FMN2Q9NZ56 1722 aa7.33□□□□□ -1.24
VPS41-203ENST00000395969 ZMYM3Q14202 1370 aa7.33□□□□□ -1.24
VPS41-203ENST00000395969 YTHDC2Q9H6S0 1430 aaKnown RBP7.33□□□□□ -1.24
VPS41-203ENST00000395969 MARF1Q9Y4F3 1742 aaKnown RBP7.33□□□□□ -1.24
VPS41-203ENST00000395969 ANP32CO43423 234 aa7.32□□□□□ -1.24
VPS41-203ENST00000395969 ERICH6BQ5W0A0 696 aa7.32□□□□□ -1.24
VPS41-203ENST00000395969 ADAMTS13Q76LX8 1427 aa7.32□□□□□ -1.24
VPS41-203ENST00000395969 RIMS2Q9UQ26 1411 aa7.32□□□□□ -1.24
VPS41-203ENST00000395969 POTEDQ86YR6 584 aa7.32□□□□□ -1.24
VPS41-203ENST00000395969 RNF123Q5XPI4 1314 aa7.31□□□□□ -1.24
VPS41-203ENST00000395969 TMF1P82094 1093 aa7.31□□□□□ -1.24
VPS41-203ENST00000395969 ADGRF5Q8IZF2 1346 aa7.31□□□□□ -1.24
VPS41-203ENST00000395969 MYBBP1AQ9BQG0 1328 aaKnown RBP7.31□□□□□ -1.24
VPS41-203ENST00000395969 NEFLP07196 543 aa7.31□□□□□ -1.24
VPS41-203ENST00000395969 NGEFQ8N5V2 710 aa7.31□□□□□ -1.24
VPS41-203ENST00000395969 TNRQ92752 1358 aa7.31□□□□□ -1.24
VPS41-203ENST00000395969 TMEM2Q9UHN6 1383 aa7.31□□□□□ -1.24
VPS41-203ENST00000395969 RGPD1P0DJD0 1748 aa7.3□□□□□ -1.24
VPS41-203ENST00000395969 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.3□□□□□ -1.24
VPS41-203ENST00000395969 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.3□□□□□ -1.24
VPS41-203ENST00000395969 COL3A1P02461 1466 aaPredicted RBP7.3□□□□□ -1.24
VPS41-203ENST00000395969 LMTK3Q96Q04 1460 aa7.3□□□□□ -1.24
VPS41-203ENST00000395969 ST20-MTHFSA0A0A6YYL1 179 aa7.3□□□□□ -1.24
VPS41-203ENST00000395969 SETD1BQ9UPS6 1966 aaKnown RBP7.3□□□□□ -1.24
VPS41-203ENST00000395969 IQSEC2Q5JU85 1478 aa7.3□□□□□ -1.24
VPS41-203ENST00000395969 ZBED9Q6R2W3 1325 aa7.3□□□□□ -1.24
VPS41-203ENST00000395969 ANKRD36BQ8N2N9 1353 aa7.3□□□□□ -1.24
VPS41-203ENST00000395969 CPSF1Q10570 1443 aaKnown RBP7.3□□□□□ -1.24
VPS41-203ENST00000395969 NBR1Q14596 966 aa7.3□□□□□ -1.24
VPS41-203ENST00000395969 VSIG10Q8N0Z9 540 aa7.3□□□□□ -1.24
VPS41-203ENST00000395969 POLR3AO14802 1390 aaPredicted RBP7.29□□□□□ -1.24
VPS41-203ENST00000395969 DEKP35659 375 aaKnown RBP7.29□□□□□ -1.24
VPS41-203ENST00000395969 NBPF1Q3BBV0 1214 aa7.29□□□□□ -1.24
VPS41-203ENST00000395969 ATAD2Q6PL18 1390 aa7.29□□□□□ -1.24
VPS41-203ENST00000395969 DDX10Q13206 875 aaKnown RBP7.28□□□□□ -1.24
VPS41-203ENST00000395969 IDI1Q13907 227 aa7.28□□□□□ -1.24
VPS41-203ENST00000395969 ANKARQ7Z5J8 1434 aa7.28□□□□□ -1.24
VPS41-203ENST00000395969 NCOA3Q9Y6Q9 1424 aa7.28□□□□□ -1.24
VPS41-203ENST00000395969 ABCC6O95255 1503 aa7.28□□□□□ -1.24
VPS41-203ENST00000395969 CFAP65Q6ZU64 1925 aaKnown RBP7.28□□□□□ -1.24
VPS41-203ENST00000395969 CAMTA1Q9Y6Y1 1673 aa7.28□□□□□ -1.24
VPS41-203ENST00000395969 SSH2Q76I76 1423 aa7.27□□□□□ -1.25
VPS41-203ENST00000395969 PNISRQ8TF01 805 aaKnown RBP7.26□□□□□ -1.25
VPS41-203ENST00000395969 PNPLA6Q8IY17 1366 aa7.26□□□□□ -1.25
VPS41-203ENST00000395969 PLEKHG2Q9H7P9 1386 aa7.26□□□□□ -1.25
VPS41-203ENST00000395969 CENPJQ9HC77 1338 aaPredicted RBP7.26□□□□□ -1.25
VPS41-203ENST00000395969 DCAF8L1A6NGE4 600 aa7.26□□□□□ -1.25
VPS41-203ENST00000395969 KIF1AQ12756 1690 aa7.26□□□□□ -1.25
VPS41-203ENST00000395969 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.25□□□□□ -1.251e-6■■■□□ 15.1
VPS41-203ENST00000395969 NLRP13Q86W25 1043 aa7.25□□□□□ -1.25
VPS41-203ENST00000395969 HDGFP51858 240 aaKnown RBP7.24□□□□□ -1.25
VPS41-203ENST00000395969 DNAJC5Q9H3Z4 198 aa7.24□□□□□ -1.25
VPS41-203ENST00000395969 AATKQ6ZMQ8 1374 aa7.24□□□□□ -1.25
VPS41-203ENST00000395969 NKTRP30414 1462 aaKnown RBP7.24□□□□□ -1.25
VPS41-203ENST00000395969 SLC4A2P04920 1241 aa7.24□□□□□ -1.25
VPS41-203ENST00000395969 PDE3BQ13370 1112 aa7.24□□□□□ -1.25
VPS41-203ENST00000395969 CRYBG1Q9Y4K1 1723 aa7.23□□□□□ -1.25
VPS41-203ENST00000395969 ZNF521Q96K83 1311 aa7.23□□□□□ -1.25
VPS41-203ENST00000395969 TRPM3Q9HCF6 1732 aaPredicted RBP7.23□□□□□ -1.25
VPS41-203ENST00000395969 EDC4Q6P2E9 1401 aaKnown RBP7.22□□□□□ -1.25
VPS41-203ENST00000395969 CDK12Q9NYV4 1490 aaPredicted RBP7.22□□□□□ -1.25
VPS41-203ENST00000395969 N4BP2Q86UW6 1770 aaPredicted RBP7.22□□□□□ -1.25
VPS41-203ENST00000395969 PIK3C2AO00443 1686 aa7.22□□□□□ -1.25
VPS41-203ENST00000395969 CFAP70Q5T0N1 1121 aa7.22□□□□□ -1.25
VPS41-203ENST00000395969 IL27Q8NEV9 243 aa7.22□□□□□ -1.25
VPS41-203ENST00000395969 EVC2Q86UK5 1308 aa7.21□□□□□ -1.25
VPS41-203ENST00000395969 KIF24Q5T7B8 1368 aa7.21□□□□□ -1.25
VPS41-203ENST00000395969 LRRC37A3O60309 1634 aa7.21□□□□□ -1.25
VPS41-203ENST00000395969 TBX22Q9Y458 520 aa7.21□□□□□ -1.26
VPS41-203ENST00000395969 USP31Q70CQ4 1352 aa7.21□□□□□ -1.26
VPS41-203ENST00000395969 LMO7Q8WWI1 1683 aa7.2□□□□□ -1.26
VPS41-203ENST00000395969 ADAMTS7Q9UKP4 1686 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 100.3 ms