RNA–Protein interactions for RNA: ENST00000394892.2

ATG4A-205, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 935 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-205ENST00000394892 NUTM2EB1AL46 878 aaPredicted RBP13.11□□□□□ -0.31
ATG4A-205ENST00000394892 NUTM2AQ8IVF1 878 aaPredicted RBP13.11□□□□□ -0.31
ATG4A-205ENST00000394892 ACIN1Q9UKV3 1341 aaKnown RBP13.11□□□□□ -0.31
ATG4A-205ENST00000394892 IFT172Q9UG01 1749 aa13.1□□□□□ -0.31
ATG4A-205ENST00000394892 DHX57Q6P158 1386 aaKnown RBP13.09□□□□□ -0.31
ATG4A-205ENST00000394892 UPF1Q92900 1129 aaKnown RBP eCLIP13.09□□□□□ -0.31
ATG4A-205ENST00000394892 YTHDC2Q9H6S0 1430 aaKnown RBP13.09□□□□□ -0.31
ATG4A-205ENST00000394892 MYOM2P54296 1465 aa13.09□□□□□ -0.31
ATG4A-205ENST00000394892 LRRC59Q96AG4 307 aaKnown RBP13.08□□□□□ -0.32
ATG4A-205ENST00000394892 SOS2Q07890 1332 aaPredicted RBP13.08□□□□□ -0.32
ATG4A-205ENST00000394892 PNPLA6Q8IY17 1366 aa13.07□□□□□ -0.32
ATG4A-205ENST00000394892 NHSL1Q5SYE7 1610 aa13.06□□□□□ -0.32
ATG4A-205ENST00000394892 SIRT1Q96EB6 747 aa13.06□□□□□ -0.32
ATG4A-205ENST00000394892 NUTM2FA1L443 756 aa13.05□□□□□ -0.32
ATG4A-205ENST00000394892 AFF2P51816 1311 aa13.05□□□□□ -0.32
ATG4A-205ENST00000394892 SHPRHQ149N8 1683 aa13.05□□□□□ -0.32
ATG4A-205ENST00000394892 ADGRB1O14514 1584 aa13.04□□□□□ -0.32
ATG4A-205ENST00000394892 KDM2AQ9Y2K7 1162 aa13.04□□□□□ -0.32
ATG4A-205ENST00000394892 CDK12Q9NYV4 1490 aaPredicted RBP13.04□□□□□ -0.32
ATG4A-205ENST00000394892 CDC42BPGQ6DT37 1551 aa13.03□□□□□ -0.32
ATG4A-205ENST00000394892 LAMC1P11047 1609 aa13.03□□□□□ -0.32
ATG4A-205ENST00000394892 ESCO1Q5FWF5 840 aa13.03□□□□□ -0.32
ATG4A-205ENST00000394892 DCAF11Q8TEB1 546 aa13.03□□□□□ -0.32
ATG4A-205ENST00000394892 C8orf37Q96NL8 207 aa13.03□□□□□ -0.32
ATG4A-205ENST00000394892 PRAM1Q96QH2 718 aa13.03□□□□□ -0.32
ATG4A-205ENST00000394892 FOXO3O43524 673 aa13.02□□□□□ -0.33
ATG4A-205ENST00000394892 RBM6P78332 1123 aaKnown RBP13.02□□□□□ -0.33
ATG4A-205ENST00000394892 XPCQ01831 940 aaPredicted RBP13.02□□□□□ -0.33
ATG4A-205ENST00000394892 SAFB2Q14151 953 aaKnown RBP eCLIP13.02□□□□□ -0.33
ATG4A-205ENST00000394892 QTRT2Q9H974 415 aaKnown RBP13.02□□□□□ -0.33
ATG4A-205ENST00000394892 NGLY1Q96IV0 654 aa13.01□□□□□ -0.33
ATG4A-205ENST00000394892 PXDNQ92626 1479 aa13.01□□□□□ -0.33
ATG4A-205ENST00000394892 KNDC1Q76NI1 1749 aa12.99□□□□□ -0.33
ATG4A-205ENST00000394892 TRAK1Q9UPV9 953 aa12.99□□□□□ -0.33
ATG4A-205ENST00000394892 DLC1Q96QB1 1528 aa12.98□□□□□ -0.33
ATG4A-205ENST00000394892 NPHP3Q7Z494 1330 aa12.97□□□□□ -0.33
ATG4A-205ENST00000394892 PRR36Q9H6K5 1346 aa12.97□□□□□ -0.33
ATG4A-205ENST00000394892 ADAMTS2O95450 1211 aa12.97□□□□□ -0.33
ATG4A-205ENST00000394892 HIRIP3Q9BW71 556 aaPredicted RBP12.97□□□□□ -0.33
ATG4A-205ENST00000394892 NBPF1Q3BBV0 1214 aa12.95□□□□□ -0.34
ATG4A-205ENST00000394892 STAC3Q96MF2 364 aa12.95□□□□□ -0.34
ATG4A-205ENST00000394892 FMN2Q9NZ56 1722 aa12.95□□□□□ -0.34
ATG4A-205ENST00000394892 SPATA31A3Q5VYP0 1347 aa12.94□□□□□ -0.34
ATG4A-205ENST00000394892 MINK1Q8N4C8 1332 aaPredicted RBP12.94□□□□□ -0.34
ATG4A-205ENST00000394892 KRT28Q7Z3Y7 464 aa12.94□□□□□ -0.34
ATG4A-205ENST00000394892 SIN3AQ96ST3 1273 aa12.94□□□□□ -0.34
ATG4A-205ENST00000394892 POGKQ9P215 609 aa12.94□□□□□ -0.34
ATG4A-205ENST00000394892 USP21Q9UK80 565 aa12.94□□□□□ -0.34
ATG4A-205ENST00000394892 TRPC5Q9UL62 973 aaPredicted RBP12.94□□□□□ -0.34
ATG4A-205ENST00000394892 PHF8Q9UPP1 1060 aa12.94□□□□□ -0.34
ATG4A-205ENST00000394892 ATAD2Q6PL18 1390 aa12.94□□□□□ -0.34
ATG4A-205ENST00000394892 FNBP4Q8N3X1 1017 aaPredicted RBP12.93□□□□□ -0.34
ATG4A-205ENST00000394892 RGS12O14924 1447 aa12.93□□□□□ -0.34
ATG4A-205ENST00000394892 USP32Q8NFA0 1604 aa12.92□□□□□ -0.34
ATG4A-205ENST00000394892 PMFBP1Q8TBY8 1022 aa12.92□□□□□ -0.34
ATG4A-205ENST00000394892 L3MBTL2Q969R5 705 aa12.92□□□□□ -0.34
ATG4A-205ENST00000394892 WASLO00401 505 aaPredicted RBP12.91□□□□□ -0.34
ATG4A-205ENST00000394892 COL22A1Q8NFW1 1626 aaPredicted RBP12.91□□□□□ -0.34
ATG4A-205ENST00000394892 ADGRB2O60241 1585 aa12.9□□□□□ -0.34
ATG4A-205ENST00000394892 ANKARQ7Z5J8 1434 aa12.9□□□□□ -0.34
ATG4A-205ENST00000394892 CABLES1Q8TDN4 633 aa12.9□□□□□ -0.34
ATG4A-205ENST00000394892 BCL9LQ86UU0 1499 aa12.9□□□□□ -0.34
ATG4A-205ENST00000394892 ZRANB1Q9UGI0 708 aa12.89□□□□□ -0.35
ATG4A-205ENST00000394892 CCDC125Q86Z20 511 aa12.88□□□□□ -0.35
ATG4A-205ENST00000394892 ATRNO75882 1429 aa12.88□□□□□ -0.35
ATG4A-205ENST00000394892 SBNO1A3KN83 1393 aa12.87□□□□□ -0.35
ATG4A-205ENST00000394892 TNS3Q68CZ2 1445 aa12.87□□□□□ -0.35
ATG4A-205ENST00000394892 NUDT16Q96DE0 195 aaKnown RBP12.86□□□□□ -0.35
ATG4A-205ENST00000394892 TULP4Q9NRJ4 1543 aa12.86□□□□□ -0.35
ATG4A-205ENST00000394892 ATP7BP35670 1465 aa12.85□□□□□ -0.35
ATG4A-205ENST00000394892 PSME1Q06323 249 aa12.85□□□□□ -0.35
ATG4A-205ENST00000394892 NBPF8Q3BBV2 869 aa12.85□□□□□ -0.35
ATG4A-205ENST00000394892 CDK19Q9BWU1 502 aa12.85□□□□□ -0.35
ATG4A-205ENST00000394892 KIF1AQ12756 1690 aa12.85□□□□□ -0.35
ATG4A-205ENST00000394892 RGPD8O14715 1765 aaPredicted RBP12.84□□□□□ -0.35
ATG4A-205ENST00000394892 SLIT2O94813 1529 aa12.84□□□□□ -0.35
ATG4A-205ENST00000394892 PLEKHG5O94827 1062 aa12.84□□□□□ -0.35
ATG4A-205ENST00000394892 NEUROD1Q13562 356 aa12.84□□□□□ -0.35
ATG4A-205ENST00000394892 ARHGEF28Q8N1W1 1705 aaKnown RBP12.84□□□□□ -0.35
ATG4A-205ENST00000394892 FAM83GA6ND36 823 aa12.82□□□□□ -0.36
ATG4A-205ENST00000394892 GJD4Q96KN9 370 aaPredicted RBP12.82□□□□□ -0.36
ATG4A-205ENST00000394892 HAP1P54257 671 aaPredicted RBP12.81□□□□□ -0.36
ATG4A-205ENST00000394892 LMOD2Q6P5Q4 547 aa12.81□□□□□ -0.36
ATG4A-205ENST00000394892 UNC5CLQ8IV45 518 aa12.81□□□□□ -0.36
ATG4A-205ENST00000394892 TRPM3Q9HCF6 1732 aaPredicted RBP12.81□□□□□ -0.36
ATG4A-205ENST00000394892 PLEKHG3A1L390 1219 aa12.8□□□□□ -0.36
ATG4A-205ENST00000394892 SF3B2Q13435 895 aaKnown RBP12.8□□□□□ -0.36
ATG4A-205ENST00000394892 NGDNQ8NEJ9 315 aaKnown RBP12.8□□□□□ -0.36
ATG4A-205ENST00000394892 CENPJQ9HC77 1338 aaPredicted RBP12.8□□□□□ -0.36
ATG4A-205ENST00000394892 POLR3AO14802 1390 aaPredicted RBP12.8□□□□□ -0.36
ATG4A-205ENST00000394892 ARHGEF10O15013 1369 aa12.8□□□□□ -0.36
ATG4A-205ENST00000394892 EIF3AQ14152 1382 aaKnown RBP12.8□□□□□ -0.36
ATG4A-205ENST00000394892 KIAA1210Q9ULL0 1709 aa12.79□□□□□ -0.36
ATG4A-205ENST00000394892 CABP2Q9NPB3 220 aa12.79□□□□□ -0.36
ATG4A-205ENST00000394892 ACEP12821 1306 aa12.79□□□□□ -0.36
ATG4A-205ENST00000394892 GPRASP1Q5JY77 1395 aa12.79□□□□□ -0.36
ATG4A-205ENST00000394892 MSH5O43196 834 aa12.78□□□□□ -0.36
ATG4A-205ENST00000394892 CCDC61Q9Y6R9 512 aa12.78□□□□□ -0.36
ATG4A-205ENST00000394892 RALGAPBQ86X10 1494 aa12.78□□□□□ -0.36
ATG4A-205ENST00000394892 GLI3P10071 1580 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms