RNA–Protein interactions for RNA: ENST00000393408.7

CBX1-202, Transcript of chromobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX1, Length 2,422 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX1-202ENST00000393408 VIRMAQ69YN4 1812 aaKnown RBP24.41■■□□□ 1.5
CBX1-202ENST00000393408 IQSEC2Q5JU85 1478 aa24.41■■□□□ 1.5
CBX1-202ENST00000393408 SLC12A5Q9H2X9 1139 aa24.4■■□□□ 1.5
CBX1-202ENST00000393408 HECW2Q9P2P5 1572 aa24.39■■□□□ 1.49
CBX1-202ENST00000393408 IGHDP01880 384 aa24.39■■□□□ 1.49
CBX1-202ENST00000393408 RUNDC1Q96C34 613 aa24.38■■□□□ 1.49
CBX1-202ENST00000393408 CFAP74Q9C0B2 1584 aa24.38■■□□□ 1.49
CBX1-202ENST00000393408 POGZQ7Z3K3 1410 aa24.38■■□□□ 1.49
CBX1-202ENST00000393408 MLH3Q9UHC1 1453 aa24.37■■□□□ 1.49
CBX1-202ENST00000393408 RPGRIP1LQ68CZ1 1315 aa24.37■■□□□ 1.49
CBX1-202ENST00000393408 SLC4A3P48751 1232 aa24.36■■□□□ 1.49
CBX1-202ENST00000393408 PHF23Q9BUL5 403 aaPredicted RBP24.36■■□□□ 1.49
CBX1-202ENST00000393408 TNNT2P45379 298 aaPredicted RBP24.35■■□□□ 1.49
CBX1-202ENST00000393408 CLUAP1Q96AJ1 413 aa24.35■■□□□ 1.49
CBX1-202ENST00000393408 ABCC3O15438 1527 aa24.34■■□□□ 1.49
CBX1-202ENST00000393408 TMEM132EQ6IEE7 984 aa24.34■■□□□ 1.49
CBX1-202ENST00000393408 PANK1Q8TE04 598 aa24.34■■□□□ 1.49
CBX1-202ENST00000393408 DAXXQ9UER7 740 aaPredicted RBP24.34■■□□□ 1.49
CBX1-202ENST00000393408 GLI2P10070 1586 aa24.34■■□□□ 1.49
CBX1-202ENST00000393408 TCP11L2Q8N4U5 519 aa24.33■■□□□ 1.49
CBX1-202ENST00000393408 CANXP27824 592 aaKnown RBP24.33■■□□□ 1.48
CBX1-202ENST00000393408 COG6Q9Y2V7 657 aa24.33■■□□□ 1.48
CBX1-202ENST00000393408 GGT6Q6P531 493 aa24.32■■□□□ 1.48
CBX1-202ENST00000393408 RRP7AQ9Y3A4 280 aaKnown RBP24.32■■□□□ 1.48
CBX1-202ENST00000393408 ARHGEF28Q8N1W1 1705 aaKnown RBP24.32■■□□□ 1.48
CBX1-202ENST00000393408 NEUROD2Q15784 382 aa24.31■■□□□ 1.48
CBX1-202ENST00000393408 CAMSAP1Q5T5Y3 1602 aa24.31■■□□□ 1.48
CBX1-202ENST00000393408 SIGLEC1Q9BZZ2 1709 aa24.31■■□□□ 1.48
CBX1-202ENST00000393408 RARSP54136 660 aaKnown RBP24.31■■□□□ 1.48
CBX1-202ENST00000393408 WDR63Q8IWG1 891 aa24.31■■□□□ 1.48
CBX1-202ENST00000393408 MTHFSP49914 203 aa24.3■■□□□ 1.48
CBX1-202ENST00000393408 NFKBIBQ15653 356 aa24.3■■□□□ 1.48
CBX1-202ENST00000393408 PUS7Q96PZ0 661 aaKnown RBP24.3■■□□□ 1.48
CBX1-202ENST00000393408 TULP4Q9NRJ4 1543 aa24.3■■□□□ 1.48
CBX1-202ENST00000393408 PIK3C2BO00750 1634 aa24.29■■□□□ 1.48
CBX1-202ENST00000393408 CD109Q6YHK3 1445 aa24.29■■□□□ 1.48
CBX1-202ENST00000393408 CCDC27Q2M243 656 aa24.29■■□□□ 1.48
CBX1-202ENST00000393408 MAPK8IP3Q9UPT6 1336 aa24.28■■□□□ 1.48
CBX1-202ENST00000393408 CFAP53Q96M91 514 aa24.27■■□□□ 1.48
CBX1-202ENST00000393408 FRAT1Q92837 279 aaPredicted RBP24.27■■□□□ 1.48
CBX1-202ENST00000393408 NSD2O96028 1365 aa24.27■■□□□ 1.48
CBX1-202ENST00000393408 ANKRD36BQ8N2N9 1353 aa24.27■■□□□ 1.48
CBX1-202ENST00000393408 NEXMIFQ5QGS0 1516 aa24.27■■□□□ 1.48
CBX1-202ENST00000393408 AAMPQ13685 434 aa24.26■■□□□ 1.47
CBX1-202ENST00000393408 EVC2Q86UK5 1308 aa24.25■■□□□ 1.47
CBX1-202ENST00000393408 NCBP3Q53F19 620 aaKnown RBP24.25■■□□□ 1.47
CBX1-202ENST00000393408 USP19O94966 1318 aa24.24■■□□□ 1.47
CBX1-202ENST00000393408 ADGRB2O60241 1585 aa24.24■■□□□ 1.47
CBX1-202ENST00000393408 NPM1P06748 294 aaKnown RBP eCLIP24.23■■□□□ 1.47
CBX1-202ENST00000393408 RLBP1P12271 317 aa24.22■■□□□ 1.47
CBX1-202ENST00000393408 VGFO15240 615 aaPredicted RBP24.21■■□□□ 1.47
CBX1-202ENST00000393408 PMFBP1Q8TBY8 1022 aa24.21■■□□□ 1.47
CBX1-202ENST00000393408 TNNQ9UQP3 1299 aa24.2■■□□□ 1.46
CBX1-202ENST00000393408 PCDHB15Q9Y5E8 787 aa24.19■■□□□ 1.46
CBX1-202ENST00000393408 GSE1Q14687 1217 aa24.19■■□□□ 1.46
CBX1-202ENST00000393408 NUTM2DQ5VT03 806 aaPredicted RBP24.19■■□□□ 1.46
CBX1-202ENST00000393408 MYH16Q9H6N6 1097 aa24.19■■□□□ 1.46
CBX1-202ENST00000393408 SEC24BO95487 1268 aa24.17■■□□□ 1.46
CBX1-202ENST00000393408 BCL2L13Q9BXK5 485 aa24.17■■□□□ 1.46
CBX1-202ENST00000393408 ZMYM3Q14202 1370 aa24.17■■□□□ 1.46
CBX1-202ENST00000393408 NLRP1Q9C000 1473 aa24.16■■□□□ 1.46
CBX1-202ENST00000393408 U2AF1L5P0DN76 240 aaPredicted RBP24.16■■□□□ 1.46
CBX1-202ENST00000393408 U2AF1Q01081 240 aaKnown RBP eCLIP24.16■■□□□ 1.46
CBX1-202ENST00000393408 CABP2Q9NPB3 220 aa24.16■■□□□ 1.46
CBX1-202ENST00000393408 DIP2CQ9Y2E4 1556 aa24.15■■□□□ 1.46
CBX1-202ENST00000393408 ARHGAP31Q2M1Z3 1444 aa24.15■■□□□ 1.46
CBX1-202ENST00000393408 ABCC11Q96J66 1382 aa24.14■■□□□ 1.46
CBX1-202ENST00000393408 ZFYVE9O95405 1425 aa24.14■■□□□ 1.45
CBX1-202ENST00000393408 NEO1Q92859 1461 aa24.13■■□□□ 1.45
CBX1-202ENST00000393408 A0A1W2PP64 1363 aa24.13■■□□□ 1.45
CBX1-202ENST00000393408 IL27Q8NEV9 243 aa24.13■■□□□ 1.45
CBX1-202ENST00000393408 OSCARQ8IYS5 282 aa24.12■■□□□ 1.45
CBX1-202ENST00000393408 PDZRN3Q9UPQ7 1066 aa24.11■■□□□ 1.45
CBX1-202ENST00000393408 COL3A1P02461 1466 aaPredicted RBP24.11■■□□□ 1.45
CBX1-202ENST00000393408 ANKRD26Q9UPS8 1709 aa24.11■■□□□ 1.45
CBX1-202ENST00000393408 FRAT2O75474 233 aaPredicted RBP24.1■■□□□ 1.45
CBX1-202ENST00000393408 RAPGEF3O95398 923 aa24.1■■□□□ 1.45
CBX1-202ENST00000393408 RWDD1Q9H446 243 aaPredicted RBP24.1■■□□□ 1.45
CBX1-202ENST00000393408 MYO5BQ9ULV0 1848 aa24.1■■□□□ 1.45
CBX1-202ENST00000393408 CT47B1P0C2W7 299 aaPredicted RBP24.1■■□□□ 1.45
CBX1-202ENST00000393408 IDI1Q13907 227 aa24.1■■□□□ 1.45
CBX1-202ENST00000393408 MVPQ14764 893 aaKnown RBP24.1■■□□□ 1.45
CBX1-202ENST00000393408 SAFB2Q14151 953 aaKnown RBP eCLIP24.09■■□□□ 1.45
CBX1-202ENST00000393408 PLEKHF1Q96S99 279 aa24.09■■□□□ 1.45
CBX1-202ENST00000393408 ZKSCAN2Q63HK3 967 aa24.08■■□□□ 1.45
CBX1-202ENST00000393408 PTPRMP28827 1452 aa24.07■■□□□ 1.44
CBX1-202ENST00000393408 CLTCQ00610 1675 aaKnown RBP24.07■■□□□ 1.44
CBX1-202ENST00000393408 RICTORQ6R327 1708 aa24.06■■□□□ 1.44
CBX1-202ENST00000393408 BECN1Q14457 450 aa24.05■■□□□ 1.44
CBX1-202ENST00000393408 DZIP1LQ8IYY4 767 aaKnown RBP24.05■■□□□ 1.44
CBX1-202ENST00000393408 MED14O60244 1454 aa24.05■■□□□ 1.44
CBX1-202ENST00000393408 SRPK2P78362 688 aaKnown RBP24.05■■□□□ 1.44
CBX1-202ENST00000393408 TSR2Q969E8 191 aaKnown RBP24.05■■□□□ 1.44
CBX1-202ENST00000393408 SLC52A1Q9NWF4 448 aa24.05■■□□□ 1.44
CBX1-202ENST00000393408 TMEM131LA2VDJ0 1609 aa24.05■■□□□ 1.44
CBX1-202ENST00000393408 TMPOP42166 694 aaKnown RBP24.04■■□□□ 1.44
CBX1-202ENST00000393408 GGNBP2Q9H3C7 697 aa24.04■■□□□ 1.44
CBX1-202ENST00000393408 STK26Q9P289 416 aa24.04■■□□□ 1.44
CBX1-202ENST00000393408 TRIM35Q9UPQ4 493 aa24.04■■□□□ 1.44
CBX1-202ENST00000393408 ATAD2Q6PL18 1390 aa24.04■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms