RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 BCL2L13Q9BXK5 485 aa13.37□□□□□ -0.27
COL6A3-205ENST00000392004 RAPGEF4Q8WZA2 1011 aa13.37□□□□□ -0.27
COL6A3-205ENST00000392004 ACEP12821 1306 aa13.36□□□□□ -0.27
COL6A3-205ENST00000392004 UGGT1Q9NYU2 1555 aa13.36□□□□□ -0.27
COL6A3-205ENST00000392004 C19orf44Q9H6X5 657 aa13.36□□□□□ -0.27
COL6A3-205ENST00000392004 PZPP20742 1482 aa13.35□□□□□ -0.27
COL6A3-205ENST00000392004 MSH6P52701 1360 aa13.35□□□□□ -0.27
COL6A3-205ENST00000392004 C8orf37Q96NL8 207 aa13.35□□□□□ -0.27
COL6A3-205ENST00000392004 PPP4R2Q9NY27 417 aa13.35□□□□□ -0.27
COL6A3-205ENST00000392004 ABCC1P33527 1531 aa13.35□□□□□ -0.27
COL6A3-205ENST00000392004 RPRD2Q5VT52 1461 aaKnown RBP13.34□□□□□ -0.27
COL6A3-205ENST00000392004 ERICH6BQ5W0A0 696 aa13.34□□□□□ -0.27
COL6A3-205ENST00000392004 EMILIN1Q9Y6C2 1016 aa13.34□□□□□ -0.27
COL6A3-205ENST00000392004 DNMT1P26358 1616 aaKnown RBP13.34□□□□□ -0.27
COL6A3-205ENST00000392004 CCDC184Q52MB2 194 aa13.34□□□□□ -0.27
COL6A3-205ENST00000392004 SULT6B1Q6IMI4 303 aa13.34□□□□□ -0.27
COL6A3-205ENST00000392004 TBX22Q9Y458 520 aa13.34□□□□□ -0.27
COL6A3-205ENST00000392004 C1orf141Q5JVX7 400 aa13.33□□□□□ -0.28
COL6A3-205ENST00000392004 CLUAP1Q96AJ1 413 aa13.33□□□□□ -0.28
COL6A3-205ENST00000392004 MLH3Q9UHC1 1453 aa13.33□□□□□ -0.28
COL6A3-205ENST00000392004 EIF2S2P20042 333 aaKnown RBP13.33□□□□□ -0.28
COL6A3-205ENST00000392004 TEFQ10587 303 aa13.33□□□□□ -0.28
COL6A3-205ENST00000392004 TMEM2Q9UHN6 1383 aa13.33□□□□□ -0.28
COL6A3-205ENST00000392004 CNTLNQ9NXG0 1405 aa13.32□□□□□ -0.28
COL6A3-205ENST00000392004 ZNF692Q9BU19 519 aaPredicted RBP13.32□□□□□ -0.28
COL6A3-205ENST00000392004 FTSJ3Q8IY81 847 aaKnown RBP13.32□□□□□ -0.28
COL6A3-205ENST00000392004 SHANK2Q9UPX8 1470 aa13.32□□□□□ -0.28
COL6A3-205ENST00000392004 KLHL34Q8N239 644 aa13.31□□□□□ -0.28
COL6A3-205ENST00000392004 KDM4FA0A1W2PPD8 638 aa13.31□□□□□ -0.28
COL6A3-205ENST00000392004 PNNQ9H307 717 aaKnown RBP13.31□□□□□ -0.28
COL6A3-205ENST00000392004 MYBBP1AQ9BQG0 1328 aaKnown RBP13.31□□□□□ -0.28
COL6A3-205ENST00000392004 DEKP35659 375 aaKnown RBP13.3□□□□□ -0.28
COL6A3-205ENST00000392004 APBB1O00213 710 aa13.3□□□□□ -0.28
COL6A3-205ENST00000392004 ADAMTS8Q9UP79 889 aa13.3□□□□□ -0.28
COL6A3-205ENST00000392004 RIPK4P57078 832 aa13.29□□□□□ -0.28
COL6A3-205ENST00000392004 SLAIN2Q9P270 581 aa13.29□□□□□ -0.28
COL6A3-205ENST00000392004 SHROOM2Q13796 1616 aa13.29□□□□□ -0.28
COL6A3-205ENST00000392004 DISP3Q9P2K9 1392 aa13.29□□□□□ -0.28
COL6A3-205ENST00000392004 PRKAR2BP31323 418 aa13.29□□□□□ -0.28
COL6A3-205ENST00000392004 SLC4A10Q6U841 1118 aa13.29□□□□□ -0.28
COL6A3-205ENST00000392004 PLEKHH1Q9ULM0 1364 aa13.28□□□□□ -0.28
COL6A3-205ENST00000392004 PPP2R1AP30153 589 aa13.28□□□□□ -0.28
COL6A3-205ENST00000392004 NSD3Q9BZ95 1437 aa13.28□□□□□ -0.28
COL6A3-205ENST00000392004 METP08581 1390 aa13.27□□□□□ -0.28
COL6A3-205ENST00000392004 CCDC136Q96JN2 1154 aa13.27□□□□□ -0.28
COL6A3-205ENST00000392004 RTL5Q5HYW3 569 aaPredicted RBP13.27□□□□□ -0.29
COL6A3-205ENST00000392004 PREX2Q70Z35 1606 aa13.26□□□□□ -0.29
COL6A3-205ENST00000392004 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.26□□□□□ -0.29
COL6A3-205ENST00000392004 CDC42BPAQ5VT25 1732 aa13.26□□□□□ -0.29
COL6A3-205ENST00000392004 THUMPD2Q9BTF0 503 aaKnown RBP13.26□□□□□ -0.29
COL6A3-205ENST00000392004 TMEM94Q12767 1356 aa13.26□□□□□ -0.29
COL6A3-205ENST00000392004 ATAD2Q6PL18 1390 aa13.26□□□□□ -0.29
COL6A3-205ENST00000392004 ADGRL2O95490 1459 aa13.26□□□□□ -0.29
COL6A3-205ENST00000392004 NBR1Q14596 966 aa13.25□□□□□ -0.29
COL6A3-205ENST00000392004 RBM42Q9BTD8 480 aaKnown RBP13.25□□□□□ -0.29
COL6A3-205ENST00000392004 HSP90AB2PQ58FF8 381 aa13.25□□□□□ -0.29
COL6A3-205ENST00000392004 HECW2Q9P2P5 1572 aa13.24□□□□□ -0.29
COL6A3-205ENST00000392004 MAGI2Q86UL8 1455 aa13.24□□□□□ -0.29
COL6A3-205ENST00000392004 NOP58Q9Y2X3 529 aaKnown RBP13.24□□□□□ -0.29
COL6A3-205ENST00000392004 FAM177BA6PVY3 158 aa13.24□□□□□ -0.29
COL6A3-205ENST00000392004 PDE3BQ13370 1112 aa13.24□□□□□ -0.29
COL6A3-205ENST00000392004 B4GALNT3Q6L9W6 998 aa13.24□□□□□ -0.29
COL6A3-205ENST00000392004 DCTN1Q14203 1278 aa13.24□□□□□ -0.29
COL6A3-205ENST00000392004 MIS18AQ9NYP9 233 aa13.24□□□□□ -0.29
COL6A3-205ENST00000392004 TTC5Q8N0Z6 440 aa13.23□□□□□ -0.29
COL6A3-205ENST00000392004 DIP2BQ9P265 1576 aa13.23□□□□□ -0.29
COL6A3-205ENST00000392004 GTF2E1P29083 439 aaPredicted RBP13.23□□□□□ -0.29
COL6A3-205ENST00000392004 NPHP3Q7Z494 1330 aa13.22□□□□□ -0.29
COL6A3-205ENST00000392004 ANP32AP39687 249 aaKnown RBP13.22□□□□□ -0.29
COL6A3-205ENST00000392004 ZNF530Q6P9A1 599 aaPredicted RBP13.22□□□□□ -0.29
COL6A3-205ENST00000392004 LRRC59Q96AG4 307 aaKnown RBP13.22□□□□□ -0.29
COL6A3-205ENST00000392004 PRAG1Q86YV5 1406 aa13.22□□□□□ -0.29
COL6A3-205ENST00000392004 PTCD1O75127 700 aaKnown RBP13.22□□□□□ -0.29
COL6A3-205ENST00000392004 PPP1R1BQ9UD71 204 aaPredicted RBP13.22□□□□□ -0.29
COL6A3-205ENST00000392004 YTHDC2Q9H6S0 1430 aaKnown RBP13.22□□□□□ -0.29
COL6A3-205ENST00000392004 AIMP1Q12904 312 aaKnown RBP13.22□□□□□ -0.29
COL6A3-205ENST00000392004 TCP11L2Q8N4U5 519 aa13.22□□□□□ -0.29
COL6A3-205ENST00000392004 TESK2Q96S53 571 aa13.22□□□□□ -0.29
COL6A3-205ENST00000392004 CHMP3Q9Y3E7 222 aa13.22□□□□□ -0.29
COL6A3-205ENST00000392004 PLIN1O60240 522 aa13.21□□□□□ -0.29
COL6A3-205ENST00000392004 GOLGA2Q08379 1002 aa13.21□□□□□ -0.29
COL6A3-205ENST00000392004 SCAF11Q99590 1463 aaKnown RBP13.21□□□□□ -0.3
COL6A3-205ENST00000392004 FYB1O15117 783 aa13.21□□□□□ -0.3
COL6A3-205ENST00000392004 SMC4Q9NTJ3 1288 aa13.21□□□□□ -0.3
COL6A3-205ENST00000392004 TATP17735 454 aaPredicted RBP13.2□□□□□ -0.3
COL6A3-205ENST00000392004 CDC42BPBQ9Y5S2 1711 aa13.2□□□□□ -0.3
COL6A3-205ENST00000392004 ABCA9Q8IUA7 1624 aa13.2□□□□□ -0.3
COL6A3-205ENST00000392004 PRDM15P57071 1507 aaPredicted RBP13.2□□□□□ -0.3
COL6A3-205ENST00000392004 TTC21BQ7Z4L5 1316 aa13.19□□□□□ -0.3
COL6A3-205ENST00000392004 STK31Q9BXU1 1019 aa13.19□□□□□ -0.3
COL6A3-205ENST00000392004 ARHGEF5Q12774 1597 aa13.19□□□□□ -0.3
COL6A3-205ENST00000392004 CDCA7LQ96GN5 454 aa13.19□□□□□ -0.3
COL6A3-205ENST00000392004 MPRIPQ6WCQ1 1025 aa13.18□□□□□ -0.3
COL6A3-205ENST00000392004 CARD14Q9BXL6 1004 aa13.18□□□□□ -0.3
COL6A3-205ENST00000392004 MYH16Q9H6N6 1097 aa13.18□□□□□ -0.3
COL6A3-205ENST00000392004 TSPYL4Q9UJ04 414 aa13.18□□□□□ -0.3
COL6A3-205ENST00000392004 MAST1Q9Y2H9 1570 aa13.18□□□□□ -0.3
COL6A3-205ENST00000392004 OS9Q13438 667 aaPredicted RBP13.18□□□□□ -0.3
COL6A3-205ENST00000392004 PPIP5K1Q6PFW1 1433 aa13.18□□□□□ -0.3
COL6A3-205ENST00000392004 GCP02774 474 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms