RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 MYOM1P52179 1685 aa12.6□□□□□ -0.39
COL6A3-204ENST00000392003 SETBP1Q9Y6X0 1596 aa12.6□□□□□ -0.39
COL6A3-204ENST00000392003 ABCC3O15438 1527 aa12.59□□□□□ -0.39
COL6A3-204ENST00000392003 CCDC146Q8IYE0 955 aa12.59□□□□□ -0.39
COL6A3-204ENST00000392003 NGEFQ8N5V2 710 aa12.59□□□□□ -0.39
COL6A3-204ENST00000392003 POGKQ9P215 609 aa12.59□□□□□ -0.39
COL6A3-204ENST00000392003 FRMPD1Q5SYB0 1578 aa12.59□□□□□ -0.39
COL6A3-204ENST00000392003 TCERG1O14776 1098 aaKnown RBP12.59□□□□□ -0.39
COL6A3-204ENST00000392003 CARD14Q9BXL6 1004 aa12.58□□□□□ -0.39
COL6A3-204ENST00000392003 CRBNQ96SW2 442 aa12.58□□□□□ -0.4
COL6A3-204ENST00000392003 PLEKHH1Q9ULM0 1364 aa12.57□□□□□ -0.4
COL6A3-204ENST00000392003 APAF1O14727 1248 aa12.57□□□□□ -0.4
COL6A3-204ENST00000392003 EVC2Q86UK5 1308 aa12.57□□□□□ -0.4
COL6A3-204ENST00000392003 DUSP27Q5VZP5 1158 aa12.57□□□□□ -0.4
COL6A3-204ENST00000392003 MYO3AQ8NEV4 1616 aa12.56□□□□□ -0.4
COL6A3-204ENST00000392003 TSPOAP1O95153 1857 aa12.56□□□□□ -0.4
COL6A3-204ENST00000392003 SLC12A5Q9H2X9 1139 aa12.56□□□□□ -0.4
COL6A3-204ENST00000392003 PPLO60437 1756 aa12.56□□□□□ -0.4
COL6A3-204ENST00000392003 NSD3Q9BZ95 1437 aa12.56□□□□□ -0.4
COL6A3-204ENST00000392003 CFAP53Q96M91 514 aa12.56□□□□□ -0.4
COL6A3-204ENST00000392003 SRPK2P78362 688 aaKnown RBP12.55□□□□□ -0.4
COL6A3-204ENST00000392003 SLFN5Q08AF3 891 aa12.55□□□□□ -0.4
COL6A3-204ENST00000392003 CAMSAP1Q5T5Y3 1602 aa12.55□□□□□ -0.4
COL6A3-204ENST00000392003 TNNT2P45379 298 aaPredicted RBP12.55□□□□□ -0.4
COL6A3-204ENST00000392003 CGNL1Q0VF96 1302 aa12.55□□□□□ -0.4
COL6A3-204ENST00000392003 E9PSI1 815 aa12.54□□□□□ -0.4
COL6A3-204ENST00000392003 PPP6R1Q9UPN7 881 aa12.54□□□□□ -0.4
COL6A3-204ENST00000392003 DNAJC5Q9H3Z4 198 aa12.54□□□□□ -0.4
COL6A3-204ENST00000392003 DIP2CQ9Y2E4 1556 aa12.54□□□□□ -0.4
COL6A3-204ENST00000392003 ZNF521Q96K83 1311 aa12.54□□□□□ -0.4
COL6A3-204ENST00000392003 GLI2P10070 1586 aa12.53□□□□□ -0.4
COL6A3-204ENST00000392003 POLR3AO14802 1390 aaPredicted RBP12.53□□□□□ -0.4
COL6A3-204ENST00000392003 PUS7Q96PZ0 661 aaKnown RBP12.53□□□□□ -0.4
COL6A3-204ENST00000392003 MS4A1P11836 297 aa12.53□□□□□ -0.4
COL6A3-204ENST00000392003 NOP58Q9Y2X3 529 aaKnown RBP12.53□□□□□ -0.4
COL6A3-204ENST00000392003 QRICH2Q9H0J4 1663 aa12.53□□□□□ -0.4
COL6A3-204ENST00000392003 ARHGAP31Q2M1Z3 1444 aa12.52□□□□□ -0.4
COL6A3-204ENST00000392003 ADGRB1O14514 1584 aa12.51□□□□□ -0.41
COL6A3-204ENST00000392003 MINK1Q8N4C8 1332 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-204ENST00000392003 DIP2BQ9P265 1576 aa12.5□□□□□ -0.41
COL6A3-204ENST00000392003 HDGFP51858 240 aaKnown RBP12.5□□□□□ -0.41
COL6A3-204ENST00000392003 CABP2Q9NPB3 220 aa12.5□□□□□ -0.41
COL6A3-204ENST00000392003 C20orf194Q5TEA3 1177 aa12.5□□□□□ -0.41
COL6A3-204ENST00000392003 PAXIP1Q6ZW49 1069 aaPredicted RBP12.5□□□□□ -0.41
COL6A3-204ENST00000392003 ZBTB47Q9UFB7 747 aaPredicted RBP12.5□□□□□ -0.41
COL6A3-204ENST00000392003 CANXP27824 592 aaKnown RBP12.49□□□□□ -0.41
COL6A3-204ENST00000392003 RUNDC1Q96C34 613 aa12.49□□□□□ -0.41
COL6A3-204ENST00000392003 IPO9Q96P70 1041 aaKnown RBP12.49□□□□□ -0.41
COL6A3-204ENST00000392003 NKTRP30414 1462 aaKnown RBP12.49□□□□□ -0.41
COL6A3-204ENST00000392003 ZC3H13Q5T200 1668 aaKnown RBP12.49□□□□□ -0.41
COL6A3-204ENST00000392003 PDE4AP27815 886 aa12.49□□□□□ -0.41
COL6A3-204ENST00000392003 NEUROD2Q15784 382 aa12.49□□□□□ -0.41
COL6A3-204ENST00000392003 NCBP3Q53F19 620 aaKnown RBP12.49□□□□□ -0.41
COL6A3-204ENST00000392003 MTHFSP49914 203 aa12.48□□□□□ -0.41
COL6A3-204ENST00000392003 CENPQQ7L2Z9 268 aaPredicted RBP12.48□□□□□ -0.41
COL6A3-204ENST00000392003 NPM2Q86SE8 214 aaKnown RBP12.48□□□□□ -0.41
COL6A3-204ENST00000392003 TRMT2AQ8IZ69 625 aaKnown RBP12.48□□□□□ -0.41
COL6A3-204ENST00000392003 PRAM1Q96QH2 718 aa12.48□□□□□ -0.41
COL6A3-204ENST00000392003 NEXMIFQ5QGS0 1516 aa12.48□□□□□ -0.41
COL6A3-204ENST00000392003 NSD2O96028 1365 aa12.48□□□□□ -0.41
COL6A3-204ENST00000392003 ANKRD36BQ8N2N9 1353 aa12.48□□□□□ -0.41
COL6A3-204ENST00000392003 RICTORQ6R327 1708 aa12.47□□□□□ -0.41
COL6A3-204ENST00000392003 PIK3C2BO00750 1634 aa12.47□□□□□ -0.41
COL6A3-204ENST00000392003 ZFYVE9O95405 1425 aa12.47□□□□□ -0.41
COL6A3-204ENST00000392003 GLIPR1L2Q4G1C9 344 aa12.47□□□□□ -0.41
COL6A3-204ENST00000392003 SIGLEC1Q9BZZ2 1709 aa12.47□□□□□ -0.41
COL6A3-204ENST00000392003 PAK3O75914 559 aaPredicted RBP12.46□□□□□ -0.41
COL6A3-204ENST00000392003 WWC1Q8IX03 1113 aa12.46□□□□□ -0.41
COL6A3-204ENST00000392003 TERF2IPQ9NYB0 399 aa12.46□□□□□ -0.41
COL6A3-204ENST00000392003 NINLQ9Y2I6 1382 aa12.46□□□□□ -0.42
COL6A3-204ENST00000392003 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.45□□□□□ -0.42
COL6A3-204ENST00000392003 DHX37Q8IY37 1157 aaKnown RBP12.45□□□□□ -0.42
COL6A3-204ENST00000392003 TCP11L2Q8N4U5 519 aa12.45□□□□□ -0.42
COL6A3-204ENST00000392003 BACH2Q9BYV9 841 aa12.45□□□□□ -0.42
COL6A3-204ENST00000392003 SPINK5Q9NQ38 1064 aaPredicted RBP12.45□□□□□ -0.42
COL6A3-204ENST00000392003 BRPF3Q9ULD4 1205 aa12.45□□□□□ -0.42
COL6A3-204ENST00000392003 ATAD2Q6PL18 1390 aa12.44□□□□□ -0.42
COL6A3-204ENST00000392003 U2AF1L5P0DN76 240 aaPredicted RBP12.44□□□□□ -0.42
COL6A3-204ENST00000392003 U2AF1Q01081 240 aaKnown RBP eCLIP12.44□□□□□ -0.42
COL6A3-204ENST00000392003 RRP7AQ9Y3A4 280 aaKnown RBP12.44□□□□□ -0.42
COL6A3-204ENST00000392003 ZMYM3Q14202 1370 aa12.44□□□□□ -0.42
COL6A3-204ENST00000392003 ARHGEF28Q8N1W1 1705 aaKnown RBP12.43□□□□□ -0.42
COL6A3-204ENST00000392003 BCAR3O75815 825 aa12.43□□□□□ -0.42
COL6A3-204ENST00000392003 HDGFL2Q7Z4V5 671 aaPredicted RBP12.43□□□□□ -0.42
COL6A3-204ENST00000392003 USP32Q8NFA0 1604 aa12.43□□□□□ -0.42
COL6A3-204ENST00000392003 TULP4Q9NRJ4 1543 aa12.43□□□□□ -0.42
COL6A3-204ENST00000392003 WDR63Q8IWG1 891 aa12.42□□□□□ -0.42
COL6A3-204ENST00000392003 CEBPAP49715 358 aaPredicted RBP12.42□□□□□ -0.42
COL6A3-204ENST00000392003 PDE3AQ14432 1141 aa12.42□□□□□ -0.42
COL6A3-204ENST00000392003 PREX1Q8TCU6 1659 aa12.41□□□□□ -0.42
COL6A3-204ENST00000392003 MYH16Q9H6N6 1097 aa12.41□□□□□ -0.42
COL6A3-204ENST00000392003 KDM2BQ8NHM5 1336 aa12.41□□□□□ -0.42
COL6A3-204ENST00000392003 U2SURPO15042 1029 aaKnown RBP12.41□□□□□ -0.42
COL6A3-204ENST00000392003 DMRT2Q9Y5R5 561 aa12.41□□□□□ -0.42
COL6A3-204ENST00000392003 YTHDC2Q9H6S0 1430 aaKnown RBP12.4□□□□□ -0.42
COL6A3-204ENST00000392003 WAPLQ7Z5K2 1190 aa12.4□□□□□ -0.42
COL6A3-204ENST00000392003 FRAT1Q92837 279 aaPredicted RBP12.4□□□□□ -0.42
COL6A3-204ENST00000392003 CDK19Q9BWU1 502 aa12.4□□□□□ -0.42
COL6A3-204ENST00000392003 GGNBP2Q9H3C7 697 aa12.4□□□□□ -0.42
COL6A3-204ENST00000392003 RIMS2Q9UQ26 1411 aa12.4□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms