RNA–Protein interactions for RNA: ENST00000379989.6

CDKL5-201, Transcript of cyclin dependent kinase like 5, humanhuman

TSL 1 (best) BASIC

Gene CDKL5, Length 3,463 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5-201ENST00000379989 TEX2Q8IWB9 1127 aa9.58□□□□□ -0.88
CDKL5-201ENST00000379989 ARID3AQ99856 593 aa9.58□□□□□ -0.88
CDKL5-201ENST00000379989 ANP32BQ92688 251 aaKnown RBP9.57□□□□□ -0.88
CDKL5-201ENST00000379989 MYH16Q9H6N6 1097 aa9.57□□□□□ -0.88
CDKL5-201ENST00000379989 RICTORQ6R327 1708 aa9.57□□□□□ -0.88
CDKL5-201ENST00000379989 MRE11P49959 708 aa9.57□□□□□ -0.88
CDKL5-201ENST00000379989 SECISBP2LQ93073 1101 aaKnown RBP9.57□□□□□ -0.88
CDKL5-201ENST00000379989 TERF1P54274 439 aa9.57□□□□□ -0.88
CDKL5-201ENST00000379989 CHMP4AQ9BY43 222 aa9.57□□□□□ -0.88
CDKL5-201ENST00000379989 IFT172Q9UG01 1749 aa9.56□□□□□ -0.88
CDKL5-201ENST00000379989 MADDQ8WXG6 1647 aa9.56□□□□□ -0.88
CDKL5-201ENST00000379989 NBPF8Q3BBV2 869 aa9.56□□□□□ -0.88
CDKL5-201ENST00000379989 SETBP1Q9Y6X0 1596 aa9.56□□□□□ -0.88
CDKL5-201ENST00000379989 ADRA2BP18089 450 aa9.56□□□□□ -0.88
CDKL5-201ENST00000379989 C8orf34Q49A92 452 aa9.56□□□□□ -0.88
CDKL5-201ENST00000379989 RPGRIP1LQ68CZ1 1315 aa9.56□□□□□ -0.88
CDKL5-201ENST00000379989 IQGAP1P46940 1657 aa9.56□□□□□ -0.88
CDKL5-201ENST00000379989 AGLP35573 1532 aa9.56□□□□□ -0.88
CDKL5-201ENST00000379989 OFD1O75665 1012 aa9.55□□□□□ -0.88
CDKL5-201ENST00000379989 CDCA8Q53HL2 280 aa9.55□□□□□ -0.88
CDKL5-201ENST00000379989 GZF1Q9H116 711 aaPredicted RBP9.55□□□□□ -0.88
CDKL5-201ENST00000379989 EIF3AQ14152 1382 aaKnown RBP9.55□□□□□ -0.88
CDKL5-201ENST00000379989 KIF20AO95235 890 aa9.54□□□□□ -0.88
CDKL5-201ENST00000379989 NRXN1Q9ULB1 1477 aa9.54□□□□□ -0.88
CDKL5-201ENST00000379989 TRIM44Q96DX7 344 aaPredicted RBP9.54□□□□□ -0.88
CDKL5-201ENST00000379989 CLTCL1P53675 1640 aa9.54□□□□□ -0.88
CDKL5-201ENST00000379989 FAM161AQ3B820 660 aa9.54□□□□□ -0.88
CDKL5-201ENST00000379989 GRPEL1Q9HAV7 217 aa9.54□□□□□ -0.88
CDKL5-201ENST00000379989 FRMPD1Q5SYB0 1578 aa9.53□□□□□ -0.88
CDKL5-201ENST00000379989 SENP3-EIF4A1A0A087X0R7 540 aa9.53□□□□□ -0.88
CDKL5-201ENST00000379989 MTERF4Q7Z6M4 381 aaKnown RBP9.53□□□□□ -0.88
CDKL5-201ENST00000379989 MYO3AQ8NEV4 1616 aa9.53□□□□□ -0.88
CDKL5-201ENST00000379989 DIP2CQ9Y2E4 1556 aa9.53□□□□□ -0.88
CDKL5-201ENST00000379989 SLKQ9H2G2 1235 aaPredicted RBP9.52□□□□□ -0.88
CDKL5-201ENST00000379989 ADGRB3O60242 1522 aa9.52□□□□□ -0.88
CDKL5-201ENST00000379989 COL17A1Q9UMD9 1497 aaPredicted RBP9.52□□□□□ -0.88
CDKL5-201ENST00000379989 ABCA6Q8N139 1617 aa9.52□□□□□ -0.88
CDKL5-201ENST00000379989 KIF7Q2M1P5 1343 aa9.52□□□□□ -0.89
CDKL5-201ENST00000379989 SYNMO15061 1565 aa9.52□□□□□ -0.89
CDKL5-201ENST00000379989 SBNO2Q9Y2G9 1366 aa9.52□□□□□ -0.89
CDKL5-201ENST00000379989 TNNT2P45379 298 aaPredicted RBP9.52□□□□□ -0.89
CDKL5-201ENST00000379989 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.52□□□□□ -0.89
CDKL5-201ENST00000379989 CARD11Q9BXL7 1154 aa9.52□□□□□ -0.89
CDKL5-201ENST00000379989 PIK3C2BO00750 1634 aa9.52□□□□□ -0.89
CDKL5-201ENST00000379989 CAMSAP1Q5T5Y3 1602 aa9.51□□□□□ -0.89
CDKL5-201ENST00000379989 ANTXR1Q9H6X2 564 aa9.51□□□□□ -0.89
CDKL5-201ENST00000379989 ZBTB22O15209 634 aa9.51□□□□□ -0.89
CDKL5-201ENST00000379989 CCDC94Q9BW85 323 aaPredicted RBP9.51□□□□□ -0.89
CDKL5-201ENST00000379989 SCAF11Q99590 1463 aaKnown RBP9.51□□□□□ -0.89
CDKL5-201ENST00000379989 ZFYVE9O95405 1425 aa9.51□□□□□ -0.89
CDKL5-201ENST00000379989 RALBP1Q15311 655 aa9.51□□□□□ -0.89
CDKL5-201ENST00000379989 GTPBP4Q9BZE4 634 aaKnown RBP9.51□□□□□ -0.89
CDKL5-201ENST00000379989 ABCC3O15438 1527 aa9.51□□□□□ -0.89
CDKL5-201ENST00000379989 LETM1O95202 739 aaPredicted RBP9.5□□□□□ -0.89
CDKL5-201ENST00000379989 PUS7Q96PZ0 661 aaKnown RBP9.5□□□□□ -0.89
CDKL5-201ENST00000379989 R3HCC1Q9Y3T6 440 aaKnown RBP9.5□□□□□ -0.89
CDKL5-201ENST00000379989 VIRMAQ69YN4 1812 aaKnown RBP9.49□□□□□ -0.89
CDKL5-201ENST00000379989 NPC1L1Q9UHC9 1359 aa9.49□□□□□ -0.89
CDKL5-201ENST00000379989 UQCRHLA0A096LP55 91 aa9.49□□□□□ -0.89
CDKL5-201ENST00000379989 UQCRHP07919 91 aa9.49□□□□□ -0.89
CDKL5-201ENST00000379989 NOS1P29475 1434 aa9.49□□□□□ -0.89
CDKL5-201ENST00000379989 AFAP1Q8N556 730 aa9.49□□□□□ -0.89
CDKL5-201ENST00000379989 RGS22Q8NE09 1264 aa9.48□□□□□ -0.89
CDKL5-201ENST00000379989 SIGLEC1Q9BZZ2 1709 aa9.48□□□□□ -0.89
CDKL5-201ENST00000379989 RCAN3Q9UKA8 241 aa9.48□□□□□ -0.89
CDKL5-201ENST00000379989 PPLO60437 1756 aa9.48□□□□□ -0.89
CDKL5-201ENST00000379989 MCM4P33991 863 aa9.48□□□□□ -0.89
CDKL5-201ENST00000379989 USP19O94966 1318 aa9.48□□□□□ -0.89
CDKL5-201ENST00000379989 BRD4O60885 1362 aaPredicted RBP9.48□□□□□ -0.89
CDKL5-201ENST00000379989 VGFO15240 615 aaPredicted RBP9.47□□□□□ -0.89
CDKL5-201ENST00000379989 SAMD1Q6SPF0 538 aaPredicted RBP9.47□□□□□ -0.89
CDKL5-201ENST00000379989 ZSCAN30Q86W11 494 aa9.47□□□□□ -0.89
CDKL5-201ENST00000379989 KDM2BQ8NHM5 1336 aa9.47□□□□□ -0.89
CDKL5-201ENST00000379989 UGGT1Q9NYU2 1555 aa9.47□□□□□ -0.89
CDKL5-201ENST00000379989 KDM5AP29375 1690 aaKnown RBP9.47□□□□□ -0.89
CDKL5-201ENST00000379989 DYNC1I1O14576 645 aa9.47□□□□□ -0.89
CDKL5-201ENST00000379989 RNF216Q9NWF9 866 aaPredicted RBP9.47□□□□□ -0.89
CDKL5-201ENST00000379989 TRAK2O60296 914 aa9.47□□□□□ -0.89
CDKL5-201ENST00000379989 TSPOAP1O95153 1857 aa9.46□□□□□ -0.89
CDKL5-201ENST00000379989 TMF1P82094 1093 aa9.46□□□□□ -0.89
CDKL5-201ENST00000379989 AMER1Q5JTC6 1135 aaPredicted RBP9.46□□□□□ -0.89
CDKL5-201ENST00000379989 ISY1Q9ULR0 285 aaKnown RBP9.46□□□□□ -0.89
CDKL5-201ENST00000379989 KIF3BO15066 747 aa9.46□□□□□ -0.9
CDKL5-201ENST00000379989 CDK11BP21127 795 aaKnown RBP9.46□□□□□ -0.9
CDKL5-201ENST00000379989 LRPPRCP42704 1394 aaKnown RBP9.46□□□□□ -0.9
CDKL5-201ENST00000379989 DNTTIP2Q5QJE6 756 aaKnown RBP9.45□□□□□ -0.9
CDKL5-201ENST00000379989 TMC1Q8TDI8 760 aa9.45□□□□□ -0.9
CDKL5-201ENST00000379989 IRX3P78415 501 aaPredicted RBP9.45□□□□□ -0.9
CDKL5-201ENST00000379989 TAF3Q5VWG9 929 aa9.45□□□□□ -0.9
CDKL5-201ENST00000379989 SLC52A1Q9NWF4 448 aa9.45□□□□□ -0.9
CDKL5-201ENST00000379989 BECN1Q14457 450 aa9.44□□□□□ -0.9
CDKL5-201ENST00000379989 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.44□□□□□ -0.9
CDKL5-201ENST00000379989 CRBNQ96SW2 442 aa9.44□□□□□ -0.9
CDKL5-201ENST00000379989 E9PSI1 815 aa9.44□□□□□ -0.9
CDKL5-201ENST00000379989 MAPK8IP2Q13387 824 aaPredicted RBP9.44□□□□□ -0.9
CDKL5-201ENST00000379989 GAS2L3Q86XJ1 694 aa9.44□□□□□ -0.9
CDKL5-201ENST00000379989 CGNQ9P2M7 1197 aaKnown RBP9.43□□□□□ -0.9
CDKL5-201ENST00000379989 NPATQ14207 1427 aa9.43□□□□□ -0.9
CDKL5-201ENST00000379989 MSNP26038 577 aaKnown RBP9.43□□□□□ -0.9
CDKL5-201ENST00000379989 PLIN1O60240 522 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms