RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 NUCB2P80303 420 aa14.99□□□□□ -0.01
VPS13A-204ENST00000376634 TSHZ2Q9NRE2 1034 aa14.99□□□□□ -0.01
VPS13A-204ENST00000376634 RSPH4AQ5TD94 716 aa14.99□□□□□ -0.01
VPS13A-204ENST00000376634 CCP110O43303 1012 aa14.98□□□□□ -0.01
VPS13A-204ENST00000376634 PANK3Q9H999 370 aa14.98□□□□□ -0.01
VPS13A-204ENST00000376634 NECTIN2Q92692 538 aa14.98□□□□□ -0.01
VPS13A-204ENST00000376634 CCDC39Q9UFE4 941 aa14.98□□□□□ -0.01
VPS13A-204ENST00000376634 ELL2O00472 640 aaPredicted RBP14.98□□□□□ -0.01
VPS13A-204ENST00000376634 SART3Q15020 963 aaKnown RBP14.98□□□□□ -0.01
VPS13A-204ENST00000376634 KIF7Q2M1P5 1343 aa14.98□□□□□ -0.01
VPS13A-204ENST00000376634 CDK5RAP3Q96JB5 506 aa14.97□□□□□ -0.01
VPS13A-204ENST00000376634 GOLGA6L10A6NI86 522 aa14.97□□□□□ -0.01
VPS13A-204ENST00000376634 IKQ13123 557 aaPredicted RBP14.97□□□□□ -0.01
VPS13A-204ENST00000376634 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.97□□□□□ -0.01
VPS13A-204ENST00000376634 ERLIN2O94905 339 aa14.97□□□□□ -0.01
VPS13A-204ENST00000376634 FYB1O15117 783 aa14.97□□□□□ -0.01
VPS13A-204ENST00000376634 NASPP49321 788 aaPredicted RBP14.97□□□□□ -0.01
VPS13A-204ENST00000376634 SYCP1Q15431 976 aa14.97□□□□□ -0.01
VPS13A-204ENST00000376634 TTLL5Q6EMB2 1281 aa14.96□□□□□ -0.01
VPS13A-204ENST00000376634 TOP2AP11388 1531 aaKnown RBP14.96□□□□□ -0.01
VPS13A-204ENST00000376634 TXLNAP40222 546 aa14.96□□□□□ -0.01
VPS13A-204ENST00000376634 MAGEC2Q9UBF1 373 aaPredicted RBP14.96□□□□□ -0.01
VPS13A-204ENST00000376634 SMARCE1Q969G3 411 aa14.96□□□□□ -0.01
VPS13A-204ENST00000376634 PSME1Q06323 249 aa14.96□□□□□ -0.01
VPS13A-204ENST00000376634 FKBP5Q13451 457 aaPredicted RBP14.96□□□□□ -0.01
VPS13A-204ENST00000376634 CCDC27Q2M243 656 aa14.96□□□□□ -0.01
VPS13A-204ENST00000376634 PLIN1O60240 522 aa14.96□□□□□ -0.01
VPS13A-204ENST00000376634 HSP90AB4PQ58FF6 505 aa14.96□□□□□ -0.01
VPS13A-204ENST00000376634 HNRNPMP52272 730 aaKnown RBP eCLIP14.96□□□□□ -0.022e-7■■■■□ 26.4
VPS13A-204ENST00000376634 CRBNQ96SW2 442 aa14.96□□□□□ -0.02
VPS13A-204ENST00000376634 SLC3A2P08195 630 aaKnown RBP14.95□□□□□ -0.02
VPS13A-204ENST00000376634 LEKR1Q6ZMV7 388 aa14.95□□□□□ -0.02
VPS13A-204ENST00000376634 PSMA5P28066 241 aa14.95□□□□□ -0.02
VPS13A-204ENST00000376634 KINO60870 393 aaKnown RBP14.95□□□□□ -0.02
VPS13A-204ENST00000376634 KLHL34Q8N239 644 aa14.95□□□□□ -0.02
VPS13A-204ENST00000376634 PLCD4Q9BRC7 762 aa14.95□□□□□ -0.02
VPS13A-204ENST00000376634 CCAR1Q8IX12 1150 aaKnown RBP14.95□□□□□ -0.02
VPS13A-204ENST00000376634 SLC4A3P48751 1232 aa14.94□□□□□ -0.02
VPS13A-204ENST00000376634 DZIP1LQ8IYY4 767 aaKnown RBP14.94□□□□□ -0.02
VPS13A-204ENST00000376634 L3MBTL2Q969R5 705 aa14.94□□□□□ -0.02
VPS13A-204ENST00000376634 SEPT7Q16181 437 aaKnown RBP14.94□□□□□ -0.02
VPS13A-204ENST00000376634 SDF4Q9BRK5 362 aa14.94□□□□□ -0.02
VPS13A-204ENST00000376634 COG6Q9Y2V7 657 aa14.94□□□□□ -0.02
VPS13A-204ENST00000376634 ANKRD18AQ8IVF6 992 aa14.94□□□□□ -0.02
VPS13A-204ENST00000376634 CCDC88BA6NC98 1476 aa14.93□□□□□ -0.02
VPS13A-204ENST00000376634 API5Q9BZZ5 524 aaKnown RBP14.93□□□□□ -0.02
VPS13A-204ENST00000376634 SMC2O95347 1197 aa14.93□□□□□ -0.02
VPS13A-204ENST00000376634 TSPYL1Q9H0U9 437 aa14.93□□□□□ -0.02
VPS13A-204ENST00000376634 FHOD3Q2V2M9 1422 aa14.93□□□□□ -0.02
VPS13A-204ENST00000376634 LETM1O95202 739 aaPredicted RBP14.93□□□□□ -0.02
VPS13A-204ENST00000376634 CHMP5Q9NZZ3 219 aa14.93□□□□□ -0.02
VPS13A-204ENST00000376634 HSP90AB3PQ58FF7 597 aa14.92□□□□□ -0.02
VPS13A-204ENST00000376634 AXDND1Q5T1B0 1012 aaPredicted RBP14.92□□□□□ -0.02
VPS13A-204ENST00000376634 ENOX2Q16206 610 aaKnown RBP14.92□□□□□ -0.02
VPS13A-204ENST00000376634 WASHC4Q2M389 1173 aa14.92□□□□□ -0.02
VPS13A-204ENST00000376634 CNTROBQ8N137 903 aa14.92□□□□□ -0.02
VPS13A-204ENST00000376634 LUC7LQ9NQ29 371 aaKnown RBP14.91□□□□□ -0.02
VPS13A-204ENST00000376634 INCENPQ9NQS7 918 aa14.91□□□□□ -0.02
VPS13A-204ENST00000376634 RAPGEF2Q9Y4G8 1499 aa14.91□□□□□ -0.02
VPS13A-204ENST00000376634 VGFO15240 615 aaPredicted RBP14.91□□□□□ -0.02
VPS13A-204ENST00000376634 GOLGA6L7A0A1B0GV03 622 aa14.91□□□□□ -0.02
VPS13A-204ENST00000376634 NEFHP12036 1026 aa14.91□□□□□ -0.02
VPS13A-204ENST00000376634 KIAA0754O94854 1291 aa14.9□□□□□ -0.02
VPS13A-204ENST00000376634 PDCP20941 246 aa14.9□□□□□ -0.02
VPS13A-204ENST00000376634 TRIM5Q9C035 493 aa14.9□□□□□ -0.02
VPS13A-204ENST00000376634 BCL11BQ9C0K0 894 aaPredicted RBP14.9□□□□□ -0.02
VPS13A-204ENST00000376634 MINK1Q8N4C8 1332 aaPredicted RBP14.9□□□□□ -0.02
VPS13A-204ENST00000376634 KANK4Q5T7N3 995 aaPredicted RBP14.9□□□□□ -0.02
VPS13A-204ENST00000376634 ST20-MTHFSA0A0A6YYL1 179 aa14.9□□□□□ -0.02
VPS13A-204ENST00000376634 RIPK4P57078 832 aa14.9□□□□□ -0.02
VPS13A-204ENST00000376634 FILIP1LQ4L180 1135 aa14.9□□□□□ -0.02
VPS13A-204ENST00000376634 TXLNBQ8N3L3 684 aa14.9□□□□□ -0.02
VPS13A-204ENST00000376634 NEUROD6Q96NK8 337 aa14.9□□□□□ -0.02
VPS13A-204ENST00000376634 SMG6Q86US8 1419 aaKnown RBP14.9□□□□□ -0.02
VPS13A-204ENST00000376634 DIAPH1O60610 1272 aaKnown RBP14.89□□□□□ -0.03
VPS13A-204ENST00000376634 KRT18P05783 430 aaKnown RBP14.89□□□□□ -0.03
VPS13A-204ENST00000376634 ZNHIT6Q9NWK9 470 aaKnown RBP14.89□□□□□ -0.03
VPS13A-204ENST00000376634 EZRP15311 586 aaKnown RBP14.89□□□□□ -0.03
VPS13A-204ENST00000376634 TBC1D2BQ9UPU7 963 aa14.89□□□□□ -0.03
VPS13A-204ENST00000376634 SUPT6HQ7KZ85 1726 aaKnown RBP14.89□□□□□ -0.03
VPS13A-204ENST00000376634 DCAF8L1A6NGE4 600 aa14.89□□□□□ -0.03
VPS13A-204ENST00000376634 PIP4K2AP48426 406 aaPredicted RBP14.89□□□□□ -0.03
VPS13A-204ENST00000376634 SKIDA1Q1XH10 827 aa14.89□□□□□ -0.03
VPS13A-204ENST00000376634 TSPYL4Q9UJ04 414 aa14.88□□□□□ -0.03
VPS13A-204ENST00000376634 CT47B1P0C2W7 299 aaPredicted RBP14.88□□□□□ -0.03
VPS13A-204ENST00000376634 RIC3Q7Z5B4 369 aa14.88□□□□□ -0.03
VPS13A-204ENST00000376634 C22orf23Q9BZE7 217 aa14.88□□□□□ -0.03
VPS13A-204ENST00000376634 STIM1Q13586 685 aa14.88□□□□□ -0.03
VPS13A-204ENST00000376634 GBP2P32456 591 aaPredicted RBP14.87□□□□□ -0.03
VPS13A-204ENST00000376634 MTMR7Q9Y216 660 aa14.87□□□□□ -0.03
VPS13A-204ENST00000376634 KIF6Q6ZMV9 814 aa14.87□□□□□ -0.03
VPS13A-204ENST00000376634 UBTFL1P0CB47 393 aaPredicted RBP14.87□□□□□ -0.03
VPS13A-204ENST00000376634 AAMPQ13685 434 aa14.86□□□□□ -0.03
VPS13A-204ENST00000376634 ZNF396Q96N95 335 aaPredicted RBP14.86□□□□□ -0.03
VPS13A-204ENST00000376634 EXOC6Q8TAG9 804 aa14.86□□□□□ -0.03
VPS13A-204ENST00000376634 HIP1O00291 1037 aa14.86□□□□□ -0.03
VPS13A-204ENST00000376634 IQCEQ6IPM2 695 aa14.85□□□□□ -0.03
VPS13A-204ENST00000376634 SMARCA4P51532 1647 aa14.85□□□□□ -0.03
VPS13A-204ENST00000376634 CDC45O75419 566 aa14.85□□□□□ -0.03
VPS13A-204ENST00000376634 DHX8Q14562 1220 aaKnown RBP14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms