RNA–Protein interactions for RNA: ENST00000373779.7

PTPRU-202, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-202ENST00000373779 ATP6V1DQ9Y5K8 247 aa21.37■■□□□ 1.01
PTPRU-202ENST00000373779 LTV1Q96GA3 475 aaPredicted RBP21.37■■□□□ 1.01
PTPRU-202ENST00000373779 NOB1Q9ULX3 412 aaKnown RBP21.37■■□□□ 1.01
PTPRU-202ENST00000373779 WWC1Q8IX03 1113 aa21.36■■□□□ 1.01
PTPRU-202ENST00000373779 HSP90B1P14625 803 aaKnown RBP21.36■■□□□ 1.01
PTPRU-202ENST00000373779 EID1Q9Y6B2 187 aa21.35■■□□□ 1.01
PTPRU-202ENST00000373779 CTTNBP2Q8WZ74 1663 aa21.34■■□□□ 1.01
PTPRU-202ENST00000373779 CDK11BP21127 795 aaKnown RBP21.34■■□□□ 1.01
PTPRU-202ENST00000373779 GNL2Q13823 731 aaKnown RBP21.34■■□□□ 1.01
PTPRU-202ENST00000373779 NKTRP30414 1462 aaKnown RBP21.33■■□□□ 1.01
PTPRU-202ENST00000373779 GCC1Q96CN9 775 aa21.32■■□□□ 1
PTPRU-202ENST00000373779 ANO2Q9NQ90 1003 aa21.32■■□□□ 1
PTPRU-202ENST00000373779 TCOF1Q13428 1488 aaKnown RBP21.32■■□□□ 1
PTPRU-202ENST00000373779 RALGAPBQ86X10 1494 aa21.32■■□□□ 1
PTPRU-202ENST00000373779 ATF7IPQ6VMQ6 1270 aa21.31■■□□□ 1
PTPRU-202ENST00000373779 PRKAR2BP31323 418 aa21.31■■□□□ 1
PTPRU-202ENST00000373779 NASPP49321 788 aaPredicted RBP21.31■■□□□ 1
PTPRU-202ENST00000373779 ANO8Q9HCE9 1232 aaPredicted RBP21.31■■□□□ 1
PTPRU-202ENST00000373779 DUSP27Q5VZP5 1158 aa21.31■■□□□ 1
PTPRU-202ENST00000373779 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.31■■□□□ 1
PTPRU-202ENST00000373779 GRIN2AQ12879 1464 aa21.3■■□□□ 1
PTPRU-202ENST00000373779 DIAPH3Q9NSV4 1193 aa21.29■■□□□ 1
PTPRU-202ENST00000373779 NSD3Q9BZ95 1437 aa21.29■■□□□ 1
PTPRU-202ENST00000373779 DISP3Q9P2K9 1392 aa21.28■■□□□ 1
PTPRU-202ENST00000373779 VSIG10Q8N0Z9 540 aa21.28■■□□□ 1
PTPRU-202ENST00000373779 C1orf115Q9H7X2 142 aa21.28■■□□□ 1
PTPRU-202ENST00000373779 LRPPRCP42704 1394 aaKnown RBP21.28■■□□□ 1
PTPRU-202ENST00000373779 FKBP5Q13451 457 aaPredicted RBP21.28■■□□□ 1
PTPRU-202ENST00000373779 TPM4P67936 248 aa21.27■■□□□ 1
PTPRU-202ENST00000373779 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.27■■□□□ 1
PTPRU-202ENST00000373779 RUFY2Q8WXA3 655 aa21.26■□□□□ 0.99
PTPRU-202ENST00000373779 TSPYL4Q9UJ04 414 aa21.26■□□□□ 0.99
PTPRU-202ENST00000373779 GPATCH8Q9UKJ3 1502 aaKnown RBP21.26■□□□□ 0.99
PTPRU-202ENST00000373779 RABEP1Q15276 862 aa21.26■□□□□ 0.99
PTPRU-202ENST00000373779 CHMP3Q9Y3E7 222 aa21.26■□□□□ 0.99
PTPRU-202ENST00000373779 MCM4P33991 863 aa21.25■□□□□ 0.99
PTPRU-202ENST00000373779 NECTIN2Q92692 538 aa21.25■□□□□ 0.99
PTPRU-202ENST00000373779 TWISTNBQ3B726 338 aaPredicted RBP21.25■□□□□ 0.99
PTPRU-202ENST00000373779 CSB-PGBD3P0DP91 1061 aa21.24■□□□□ 0.99
PTPRU-202ENST00000373779 RARSP54136 660 aaKnown RBP21.24■□□□□ 0.99
PTPRU-202ENST00000373779 KIF3AQ9Y496 699 aa21.23■□□□□ 0.99
PTPRU-202ENST00000373779 CHD1LQ86WJ1 897 aa21.23■□□□□ 0.99
PTPRU-202ENST00000373779 PRAM1Q96QH2 718 aa21.23■□□□□ 0.99
PTPRU-202ENST00000373779 ISY1Q9ULR0 285 aaKnown RBP21.23■□□□□ 0.99
PTPRU-202ENST00000373779 EIF2S2P20042 333 aaKnown RBP21.22■□□□□ 0.99
PTPRU-202ENST00000373779 GORABQ5T7V8 394 aa21.22■□□□□ 0.99
PTPRU-202ENST00000373779 CAVIN1Q6NZI2 390 aaKnown RBP21.22■□□□□ 0.99
PTPRU-202ENST00000373779 H3BQV1 296 aa21.21■□□□□ 0.99
PTPRU-202ENST00000373779 ZKSCAN1P17029 563 aaPredicted RBP21.21■□□□□ 0.99
PTPRU-202ENST00000373779 IFFO2Q5TF58 517 aa21.21■□□□□ 0.99
PTPRU-202ENST00000373779 K7ELQ4 463 aaPredicted RBP21.21■□□□□ 0.99
PTPRU-202ENST00000373779 GRPEL1Q9HAV7 217 aa21.2■□□□□ 0.98
PTPRU-202ENST00000373779 FAM13BQ9NYF5 915 aa21.2■□□□□ 0.98
PTPRU-202ENST00000373779 RAPGEF6Q8TEU7 1601 aa21.2■□□□□ 0.98
PTPRU-202ENST00000373779 PARD3Q8TEW0 1356 aa21.2■□□□□ 0.98
PTPRU-202ENST00000373779 TEFQ10587 303 aa21.2■□□□□ 0.98
PTPRU-202ENST00000373779 CCDC173Q0VFZ6 552 aa21.19■□□□□ 0.98
PTPRU-202ENST00000373779 SCAF11Q99590 1463 aaKnown RBP21.19■□□□□ 0.98
PTPRU-202ENST00000373779 RPGRIP1LQ68CZ1 1315 aa21.19■□□□□ 0.98
PTPRU-202ENST00000373779 CIZ1Q9ULV3 898 aaPredicted RBP21.18■□□□□ 0.98
PTPRU-202ENST00000373779 SMC3Q9UQE7 1217 aa21.18■□□□□ 0.98
PTPRU-202ENST00000373779 C9orf78Q9NZ63 289 aaPredicted RBP21.18■□□□□ 0.98
PTPRU-202ENST00000373779 FAM184AQ8NB25 1140 aa21.18■□□□□ 0.98
PTPRU-202ENST00000373779 ITSN2Q9NZM3 1697 aa21.18■□□□□ 0.98
PTPRU-202ENST00000373779 TMPOP42166 694 aaKnown RBP21.18■□□□□ 0.98
PTPRU-202ENST00000373779 IFIT2P09913 472 aaKnown RBP21.17■□□□□ 0.98
PTPRU-202ENST00000373779 DHX29Q7Z478 1369 aaKnown RBP21.17■□□□□ 0.98
PTPRU-202ENST00000373779 TMEM57Q8N5G2 664 aa21.17■□□□□ 0.98
PTPRU-202ENST00000373779 CCDC39Q9UFE4 941 aa21.17■□□□□ 0.98
PTPRU-202ENST00000373779 ZNF330Q9Y3S2 320 aaPredicted RBP21.17■□□□□ 0.98
PTPRU-202ENST00000373779 GOLGA6L19H0YKK7 550 aa21.16■□□□□ 0.98
PTPRU-202ENST00000373779 C1orf141Q5JVX7 400 aa21.16■□□□□ 0.98
PTPRU-202ENST00000373779 MBD3O95983 291 aa21.16■□□□□ 0.98
PTPRU-202ENST00000373779 PRPF40AO75400 957 aaKnown RBP21.15■□□□□ 0.98
PTPRU-202ENST00000373779 NEK4P51957 841 aa21.15■□□□□ 0.98
PTPRU-202ENST00000373779 SF3A1Q15459 793 aaKnown RBP21.15■□□□□ 0.98
PTPRU-202ENST00000373779 CDK19Q9BWU1 502 aa21.15■□□□□ 0.98
PTPRU-202ENST00000373779 CABP1Q9NZU7 370 aa21.15■□□□□ 0.98
PTPRU-202ENST00000373779 FAM135AQ9P2D6 1515 aa21.15■□□□□ 0.98
PTPRU-202ENST00000373779 HSP90AB4PQ58FF6 505 aa21.15■□□□□ 0.98
PTPRU-202ENST00000373779 ZNF428Q96B54 188 aa21.14■□□□□ 0.98
PTPRU-202ENST00000373779 NUP153P49790 1475 aaKnown RBP21.14■□□□□ 0.98
PTPRU-202ENST00000373779 MCM2P49736 904 aa21.14■□□□□ 0.97
PTPRU-202ENST00000373779 VPS37CA5D8V6 355 aaPredicted RBP21.14■□□□□ 0.97
PTPRU-202ENST00000373779 CWC22Q9HCG8 908 aaKnown RBP21.14■□□□□ 0.97
PTPRU-202ENST00000373779 R3HCC1Q9Y3T6 440 aaKnown RBP21.14■□□□□ 0.97
PTPRU-202ENST00000373779 RNF214Q8ND24 703 aa21.13■□□□□ 0.97
PTPRU-202ENST00000373779 ATAD2Q6PL18 1390 aa21.13■□□□□ 0.97
PTPRU-202ENST00000373779 UBTFL1P0CB47 393 aaPredicted RBP21.13■□□□□ 0.97
PTPRU-202ENST00000373779 TAF7LQ5H9L4 462 aa21.13■□□□□ 0.97
PTPRU-202ENST00000373779 GNAI3P08754 354 aa21.13■□□□□ 0.97
PTPRU-202ENST00000373779 GPRASP1Q5JY77 1395 aa21.13■□□□□ 0.97
PTPRU-202ENST00000373779 PRAG1Q86YV5 1406 aa21.13■□□□□ 0.97
PTPRU-202ENST00000373779 TPM2P07951 284 aa21.13■□□□□ 0.97
PTPRU-202ENST00000373779 BECN2A8MW95 431 aa21.12■□□□□ 0.97
PTPRU-202ENST00000373779 IGHDP01880 384 aa21.12■□□□□ 0.97
PTPRU-202ENST00000373779 FCHSD2O94868 740 aa21.12■□□□□ 0.97
PTPRU-202ENST00000373779 TBC1D2Q9BYX2 928 aa21.12■□□□□ 0.97
PTPRU-202ENST00000373779 ERC2O15083 957 aa21.12■□□□□ 0.97
PTPRU-202ENST00000373779 RNF20Q5VTR2 975 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms