RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 CFAP70Q5T0N1 1121 aa31.87■■■□□ 2.69
CCDC28B-201ENST00000373602 LRRC59Q96AG4 307 aaKnown RBP31.87■■■□□ 2.69
CCDC28B-201ENST00000373602 POTEAQ6S8J7 498 aa31.86■■■□□ 2.69
CCDC28B-201ENST00000373602 ORAI2Q96SN7 254 aa31.86■■■□□ 2.69
CCDC28B-201ENST00000373602 LAMC1P11047 1609 aa31.86■■■□□ 2.69
CCDC28B-201ENST00000373602 PLEKHH1Q9ULM0 1364 aa31.84■■■□□ 2.69
CCDC28B-201ENST00000373602 SIRT1Q96EB6 747 aa31.84■■■□□ 2.69
CCDC28B-201ENST00000373602 DHX57Q6P158 1386 aaKnown RBP31.82■■■□□ 2.69
CCDC28B-201ENST00000373602 MEX3CQ5U5Q3 659 aaKnown RBP31.79■■■□□ 2.68
CCDC28B-201ENST00000373602 SOS2Q07890 1332 aaPredicted RBP31.78■■■□□ 2.68
CCDC28B-201ENST00000373602 PNPLA6Q8IY17 1366 aa31.78■■■□□ 2.68
CCDC28B-201ENST00000373602 NUTM2BA6NNL0 878 aaPredicted RBP31.76■■■□□ 2.67
CCDC28B-201ENST00000373602 NUTM2EB1AL46 878 aaPredicted RBP31.76■■■□□ 2.67
CCDC28B-201ENST00000373602 NUTM2AQ8IVF1 878 aaPredicted RBP31.76■■■□□ 2.67
CCDC28B-201ENST00000373602 DCAF11Q8TEB1 546 aa31.76■■■□□ 2.67
CCDC28B-201ENST00000373602 STAC3Q96MF2 364 aa31.76■■■□□ 2.67
CCDC28B-201ENST00000373602 ESCO1Q5FWF5 840 aa31.75■■■□□ 2.67
CCDC28B-201ENST00000373602 KDM2AQ9Y2K7 1162 aa31.75■■■□□ 2.67
CCDC28B-201ENST00000373602 ADGRB1O14514 1584 aa31.72■■■□□ 2.67
CCDC28B-201ENST00000373602 DLC1Q96QB1 1528 aa31.7■■■□□ 2.67
CCDC28B-201ENST00000373602 ZNF772Q68DY9 489 aaPredicted RBP31.7■■■□□ 2.67
CCDC28B-201ENST00000373602 NPHP3Q7Z494 1330 aa31.7■■■□□ 2.66
CCDC28B-201ENST00000373602 FMN2Q9NZ56 1722 aa31.69■■■□□ 2.66
CCDC28B-201ENST00000373602 NUTM2FA1L443 756 aa31.69■■■□□ 2.66
CCDC28B-201ENST00000373602 PRAM1Q96QH2 718 aa31.68■■■□□ 2.66
CCDC28B-201ENST00000373602 PXDNQ92626 1479 aa31.65■■■□□ 2.66
CCDC28B-201ENST00000373602 FOXO3O43524 673 aa31.64■■■□□ 2.66
CCDC28B-201ENST00000373602 SAFB2Q14151 953 aaKnown RBP eCLIP31.63■■■□□ 2.65
CCDC28B-201ENST00000373602 POGKQ9P215 609 aa31.63■■■□□ 2.65
CCDC28B-201ENST00000373602 TRAK1Q9UPV9 953 aa31.61■■■□□ 2.65
CCDC28B-201ENST00000373602 AFF2P51816 1311 aa31.6■■■□□ 2.65
CCDC28B-201ENST00000373602 KIF1AQ12756 1690 aa31.58■■■□□ 2.65
CCDC28B-201ENST00000373602 COL22A1Q8NFW1 1626 aaPredicted RBP31.58■■■□□ 2.65
CCDC28B-201ENST00000373602 XPCQ01831 940 aaPredicted RBP31.58■■■□□ 2.65
CCDC28B-201ENST00000373602 C8orf37Q96NL8 207 aa31.57■■■□□ 2.64
CCDC28B-201ENST00000373602 ADGRB2O60241 1585 aa31.56■■■□□ 2.64
CCDC28B-201ENST00000373602 ADAMTS2O95450 1211 aa31.55■■■□□ 2.64
CCDC28B-201ENST00000373602 PHF8Q9UPP1 1060 aa31.54■■■□□ 2.64
CCDC28B-201ENST00000373602 RGPD8O14715 1765 aaPredicted RBP31.53■■■□□ 2.64
CCDC28B-201ENST00000373602 ANKARQ7Z5J8 1434 aa31.5■■■□□ 2.63
CCDC28B-201ENST00000373602 RXRBP28702 533 aa31.5■■■□□ 2.63
CCDC28B-201ENST00000373602 NGLY1Q96IV0 654 aa31.5■■■□□ 2.63
CCDC28B-201ENST00000373602 KRT28Q7Z3Y7 464 aa31.49■■■□□ 2.63
CCDC28B-201ENST00000373602 HIRIP3Q9BW71 556 aaPredicted RBP31.49■■■□□ 2.63
CCDC28B-201ENST00000373602 SPATA31A3Q5VYP0 1347 aa31.49■■■□□ 2.63
CCDC28B-201ENST00000373602 MINK1Q8N4C8 1332 aaPredicted RBP31.49■■■□□ 2.63
CCDC28B-201ENST00000373602 USP32Q8NFA0 1604 aa31.48■■■□□ 2.63
CCDC28B-201ENST00000373602 KIAA1210Q9ULL0 1709 aa31.46■■■□□ 2.63
CCDC28B-201ENST00000373602 ARHGEF28Q8N1W1 1705 aaKnown RBP31.46■■■□□ 2.63
CCDC28B-201ENST00000373602 QTRT2Q9H974 415 aaKnown RBP31.45■■■□□ 2.63
CCDC28B-201ENST00000373602 EIF3AQ14152 1382 aaKnown RBP31.44■■■□□ 2.62
CCDC28B-201ENST00000373602 WASLO00401 505 aaPredicted RBP31.44■■■□□ 2.62
CCDC28B-201ENST00000373602 PSME1Q06323 249 aa31.44■■■□□ 2.62
CCDC28B-201ENST00000373602 CDK12Q9NYV4 1490 aaPredicted RBP31.44■■■□□ 2.62
CCDC28B-201ENST00000373602 FNBP4Q8N3X1 1017 aaPredicted RBP31.42■■■□□ 2.62
CCDC28B-201ENST00000373602 TULP4Q9NRJ4 1543 aa31.41■■■□□ 2.62
CCDC28B-201ENST00000373602 PMFBP1Q8TBY8 1022 aa31.4■■■□□ 2.62
CCDC28B-201ENST00000373602 PRR36Q9H6K5 1346 aa31.4■■■□□ 2.62
CCDC28B-201ENST00000373602 SBNO1A3KN83 1393 aa31.4■■■□□ 2.62
CCDC28B-201ENST00000373602 TNS3Q68CZ2 1445 aa31.4■■■□□ 2.62
CCDC28B-201ENST00000373602 RBM6P78332 1123 aaKnown RBP31.39■■■□□ 2.62
CCDC28B-201ENST00000373602 NBPF1Q3BBV0 1214 aa31.39■■■□□ 2.62
CCDC28B-201ENST00000373602 USP21Q9UK80 565 aa31.39■■■□□ 2.62
CCDC28B-201ENST00000373602 L3MBTL2Q969R5 705 aa31.37■■■□□ 2.61
CCDC28B-201ENST00000373602 SIN3AQ96ST3 1273 aa31.37■■■□□ 2.61
CCDC28B-201ENST00000373602 MARF1Q9Y4F3 1742 aaKnown RBP31.36■■■□□ 2.61
CCDC28B-201ENST00000373602 TRPC5Q9UL62 973 aaPredicted RBP31.34■■■□□ 2.61
CCDC28B-201ENST00000373602 ARHGEF10O15013 1369 aa31.31■■■□□ 2.6
CCDC28B-201ENST00000373602 BCL9LQ86UU0 1499 aa31.31■■■□□ 2.6
CCDC28B-201ENST00000373602 RGS12O14924 1447 aa31.3■■■□□ 2.6
CCDC28B-201ENST00000373602 ATRNO75882 1429 aa31.3■■■□□ 2.6
CCDC28B-201ENST00000373602 GPRASP1Q5JY77 1395 aa31.3■■■□□ 2.6
CCDC28B-201ENST00000373602 ATP7BP35670 1465 aa31.29■■■□□ 2.6
CCDC28B-201ENST00000373602 NEUROD1Q13562 356 aa31.28■■■□□ 2.6
CCDC28B-201ENST00000373602 LMOD2Q6P5Q4 547 aa31.28■■■□□ 2.6
CCDC28B-201ENST00000373602 NUDT16Q96DE0 195 aaKnown RBP31.28■■■□□ 2.6
CCDC28B-201ENST00000373602 CDK19Q9BWU1 502 aa31.28■■■□□ 2.6
CCDC28B-201ENST00000373602 TRPM3Q9HCF6 1732 aaPredicted RBP31.28■■■□□ 2.6
CCDC28B-201ENST00000373602 CABLES1Q8TDN4 633 aa31.27■■■□□ 2.6
CCDC28B-201ENST00000373602 NGDNQ8NEJ9 315 aaKnown RBP31.26■■■□□ 2.59
CCDC28B-201ENST00000373602 SLIT2O94813 1529 aa31.24■■■□□ 2.59
CCDC28B-201ENST00000373602 ITSN1Q15811 1721 aa31.24■■■□□ 2.59
CCDC28B-201ENST00000373602 HAP1P54257 671 aaPredicted RBP31.24■■■□□ 2.59
CCDC28B-201ENST00000373602 UPF1Q92900 1129 aaKnown RBP eCLIP31.24■■■□□ 2.59
CCDC28B-201ENST00000373602 CENPJQ9HC77 1338 aaPredicted RBP31.23■■■□□ 2.59
CCDC28B-201ENST00000373602 ALS2Q96Q42 1657 aa31.22■■■□□ 2.59
CCDC28B-201ENST00000373602 ABCA3Q99758 1704 aa31.21■■■□□ 2.59
CCDC28B-201ENST00000373602 PLEKHG5O94827 1062 aa31.2■■■□□ 2.59
CCDC28B-201ENST00000373602 UNC5CLQ8IV45 518 aa31.2■■■□□ 2.59
CCDC28B-201ENST00000373602 TNKS1BP1Q9C0C2 1729 aaKnown RBP31.2■■■□□ 2.58
CCDC28B-201ENST00000373602 TRPM1Q7Z4N2 1603 aa31.19■■■□□ 2.58
CCDC28B-201ENST00000373602 TRIM26Q12899 539 aaPredicted RBP31.18■■■□□ 2.58
CCDC28B-201ENST00000373602 CCDC61Q9Y6R9 512 aa31.18■■■□□ 2.58
CCDC28B-201ENST00000373602 TOPAZ1Q8N9V7 1692 aa31.17■■■□□ 2.58
CCDC28B-201ENST00000373602 GJD4Q96KN9 370 aaPredicted RBP31.16■■■□□ 2.58
CCDC28B-201ENST00000373602 POLR3AO14802 1390 aaPredicted RBP31.16■■■□□ 2.58
CCDC28B-201ENST00000373602 PLEKHG3A1L390 1219 aa31.14■■■□□ 2.58
CCDC28B-201ENST00000373602 PAK3O75914 559 aaPredicted RBP31.14■■■□□ 2.58
CCDC28B-201ENST00000373602 QRICH2Q9H0J4 1663 aa31.13■■■□□ 2.57
CCDC28B-201ENST00000373602 ACEP12821 1306 aa31.12■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms