RNA–Protein interactions for RNA: ENST00000370496.3

COL9A1-204, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 1,372 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-204ENST00000370496 ROBO1Q9Y6N7 1651 aa21.22■□□□□ 0.99
COL9A1-204ENST00000370496 WAPLQ7Z5K2 1190 aa21.22■□□□□ 0.99
COL9A1-204ENST00000370496 ILDR1Q86SU0 546 aaPredicted RBP21.22■□□□□ 0.99
COL9A1-204ENST00000370496 CADPS2Q86UW7 1296 aa21.22■□□□□ 0.99
COL9A1-204ENST00000370496 NBPF1Q3BBV0 1214 aa21.21■□□□□ 0.99
COL9A1-204ENST00000370496 PRAM1Q96QH2 718 aa21.21■□□□□ 0.99
COL9A1-204ENST00000370496 POGKQ9P215 609 aa21.2■□□□□ 0.98
COL9A1-204ENST00000370496 ADGRB2O60241 1585 aa21.19■□□□□ 0.98
COL9A1-204ENST00000370496 NBPF8Q3BBV2 869 aa21.19■□□□□ 0.98
COL9A1-204ENST00000370496 SAFB2Q14151 953 aaKnown RBP eCLIP21.18■□□□□ 0.98
COL9A1-204ENST00000370496 SIRT1Q96EB6 747 aa21.18■□□□□ 0.98
COL9A1-204ENST00000370496 QRICH2Q9H0J4 1663 aa21.18■□□□□ 0.98
COL9A1-204ENST00000370496 FMN2Q9NZ56 1722 aa21.17■□□□□ 0.98
COL9A1-204ENST00000370496 MST1RQ04912 1400 aa21.16■□□□□ 0.98
COL9A1-204ENST00000370496 TIMELESSQ9UNS1 1208 aa21.16■□□□□ 0.98
COL9A1-204ENST00000370496 GPRASP1Q5JY77 1395 aa21.14■□□□□ 0.98
COL9A1-204ENST00000370496 SLAIN2Q9P270 581 aa21.14■□□□□ 0.98
COL9A1-204ENST00000370496 EIF3AQ14152 1382 aaKnown RBP21.13■□□□□ 0.97
COL9A1-204ENST00000370496 CARD11Q9BXL7 1154 aa21.1■□□□□ 0.97
COL9A1-204ENST00000370496 C1orf167Q5SNV9 1468 aa21.1■□□□□ 0.97
COL9A1-204ENST00000370496 MINK1Q8N4C8 1332 aaPredicted RBP21.1■□□□□ 0.97
COL9A1-204ENST00000370496 PHLPP1O60346 1717 aa21.1■□□□□ 0.97
COL9A1-204ENST00000370496 CENPJQ9HC77 1338 aaPredicted RBP21.08■□□□□ 0.97
COL9A1-204ENST00000370496 HIRIP3Q9BW71 556 aaPredicted RBP21.08■□□□□ 0.96
COL9A1-204ENST00000370496 NHSL1Q5SYE7 1610 aa21.07■□□□□ 0.96
COL9A1-204ENST00000370496 AHDC1Q5TGY3 1603 aaPredicted RBP21.06■□□□□ 0.96
COL9A1-204ENST00000370496 KIF1AQ12756 1690 aa21.06■□□□□ 0.96
COL9A1-204ENST00000370496 RGPD8O14715 1765 aaPredicted RBP21.06■□□□□ 0.96
COL9A1-204ENST00000370496 TULP4Q9NRJ4 1543 aa21.06■□□□□ 0.96
COL9A1-204ENST00000370496 ITSN1Q15811 1721 aa21.05■□□□□ 0.96
COL9A1-204ENST00000370496 USP32Q8NFA0 1604 aa21.05■□□□□ 0.96
COL9A1-204ENST00000370496 NUTM2FA1L443 756 aa21.04■□□□□ 0.96
COL9A1-204ENST00000370496 HSPA1LP34931 641 aa21.04■□□□□ 0.96
COL9A1-204ENST00000370496 BRINP3Q76B58 766 aa21.04■□□□□ 0.96
COL9A1-204ENST00000370496 ANKARQ7Z5J8 1434 aa21.03■□□□□ 0.96
COL9A1-204ENST00000370496 COL16A1Q07092 1604 aaPredicted RBP21.02■□□□□ 0.96
COL9A1-204ENST00000370496 WASLO00401 505 aaPredicted RBP21■□□□□ 0.95
COL9A1-204ENST00000370496 ESCO1Q5FWF5 840 aa20.99■□□□□ 0.95
COL9A1-204ENST00000370496 ATP7BP35670 1465 aa20.99■□□□□ 0.95
COL9A1-204ENST00000370496 TOPAZ1Q8N9V7 1692 aa20.99■□□□□ 0.95
COL9A1-204ENST00000370496 ORAI2Q96SN7 254 aa20.98■□□□□ 0.95
COL9A1-204ENST00000370496 USP47Q96K76 1375 aa20.98■□□□□ 0.95
COL9A1-204ENST00000370496 SBNO2Q9Y2G9 1366 aa20.95■□□□□ 0.94
COL9A1-204ENST00000370496 SRPK2P78362 688 aaKnown RBP20.95■□□□□ 0.94
COL9A1-204ENST00000370496 CDK19Q9BWU1 502 aa20.95■□□□□ 0.94
COL9A1-204ENST00000370496 EVC2Q86UK5 1308 aa20.93■□□□□ 0.94
COL9A1-204ENST00000370496 PRR36Q9H6K5 1346 aa20.93■□□□□ 0.94
COL9A1-204ENST00000370496 NPHP3Q7Z494 1330 aa20.92■□□□□ 0.94
COL9A1-204ENST00000370496 SHPRHQ149N8 1683 aa20.92■□□□□ 0.94
COL9A1-204ENST00000370496 DDX17Q92841 729 aaKnown RBP20.92■□□□□ 0.94
COL9A1-204ENST00000370496 PHF8Q9UPP1 1060 aa20.91■□□□□ 0.94
COL9A1-204ENST00000370496 PXDNQ92626 1479 aa20.9■□□□□ 0.94
COL9A1-204ENST00000370496 NUDT16Q96DE0 195 aaKnown RBP20.9■□□□□ 0.94
COL9A1-204ENST00000370496 ST20-MTHFSA0A0A6YYL1 179 aa20.89■□□□□ 0.93
COL9A1-204ENST00000370496 CABP2Q9NPB3 220 aa20.89■□□□□ 0.93
COL9A1-204ENST00000370496 JCADQ9P266 1359 aa20.89■□□□□ 0.93
COL9A1-204ENST00000370496 FOXO3O43524 673 aa20.88■□□□□ 0.93
COL9A1-204ENST00000370496 PPIP5K1Q6PFW1 1433 aa20.87■□□□□ 0.93
COL9A1-204ENST00000370496 PMFBP1Q8TBY8 1022 aa20.87■□□□□ 0.93
COL9A1-204ENST00000370496 XPCQ01831 940 aaPredicted RBP20.86■□□□□ 0.93
COL9A1-204ENST00000370496 SOS2Q07890 1332 aaPredicted RBP20.85■□□□□ 0.93
COL9A1-204ENST00000370496 ATAD2Q6PL18 1390 aa20.85■□□□□ 0.93
COL9A1-204ENST00000370496 NGDNQ8NEJ9 315 aaKnown RBP20.85■□□□□ 0.93
COL9A1-204ENST00000370496 CCDC61Q9Y6R9 512 aa20.85■□□□□ 0.93
COL9A1-204ENST00000370496 TRPM3Q9HCF6 1732 aaPredicted RBP20.84■□□□□ 0.93
COL9A1-204ENST00000370496 MED1Q15648 1581 aaPredicted RBP20.84■□□□□ 0.93
COL9A1-204ENST00000370496 LRRC59Q96AG4 307 aaKnown RBP20.83■□□□□ 0.92
COL9A1-204ENST00000370496 TESK2Q96S53 571 aa20.83■□□□□ 0.92
COL9A1-204ENST00000370496 SLC24A1O60721 1099 aa20.82■□□□□ 0.92
COL9A1-204ENST00000370496 EIF4G2P78344 907 aaKnown RBP eCLIP20.82■□□□□ 0.92
COL9A1-204ENST00000370496 COL22A1Q8NFW1 1626 aaPredicted RBP20.82■□□□□ 0.92
COL9A1-204ENST00000370496 PSME1Q06323 249 aa20.81■□□□□ 0.92
COL9A1-204ENST00000370496 TNS3Q68CZ2 1445 aa20.81■□□□□ 0.92
COL9A1-204ENST00000370496 PNPLA6Q8IY17 1366 aa20.81■□□□□ 0.92
COL9A1-204ENST00000370496 AKAP12Q02952 1782 aa20.8■□□□□ 0.92
COL9A1-204ENST00000370496 POLR3AO14802 1390 aaPredicted RBP20.8■□□□□ 0.92
COL9A1-204ENST00000370496 DISP3Q9P2K9 1392 aa20.8■□□□□ 0.92
COL9A1-204ENST00000370496 KRT28Q7Z3Y7 464 aa20.8■□□□□ 0.92
COL9A1-204ENST00000370496 TMF1P82094 1093 aa20.79■□□□□ 0.92
COL9A1-204ENST00000370496 POTEDQ86YR6 584 aa20.79■□□□□ 0.92
COL9A1-204ENST00000370496 ALS2Q96Q42 1657 aa20.79■□□□□ 0.92
COL9A1-204ENST00000370496 ACEP12821 1306 aa20.78■□□□□ 0.92
COL9A1-204ENST00000370496 SBNO1A3KN83 1393 aa20.77■□□□□ 0.92
COL9A1-204ENST00000370496 SPATA31A6Q5VVP1 1343 aa20.77■□□□□ 0.92
COL9A1-204ENST00000370496 PLEKHG3A1L390 1219 aa20.77■□□□□ 0.92
COL9A1-204ENST00000370496 HSPA5P11021 654 aaKnown RBP20.76■□□□□ 0.91
COL9A1-204ENST00000370496 MON2Q7Z3U7 1717 aa20.76■□□□□ 0.91
COL9A1-204ENST00000370496 ABCA3Q99758 1704 aa20.76■□□□□ 0.91
COL9A1-204ENST00000370496 SPATA31A3Q5VYP0 1347 aa20.75■□□□□ 0.91
COL9A1-204ENST00000370496 CABP1Q9NZU7 370 aa20.75■□□□□ 0.91
COL9A1-204ENST00000370496 LRP6O75581 1613 aa20.75■□□□□ 0.91
COL9A1-204ENST00000370496 ARHGEF10O15013 1369 aa20.75■□□□□ 0.91
COL9A1-204ENST00000370496 NRKQ7Z2Y5 1582 aa20.74■□□□□ 0.91
COL9A1-204ENST00000370496 MYOM1P52179 1685 aa20.74■□□□□ 0.91
COL9A1-204ENST00000370496 PAK3O75914 559 aaPredicted RBP20.73■□□□□ 0.91
COL9A1-204ENST00000370496 CDCA8Q53HL2 280 aa20.73■□□□□ 0.91
COL9A1-204ENST00000370496 LMOD2Q6P5Q4 547 aa20.73■□□□□ 0.91
COL9A1-204ENST00000370496 TMC1Q8TDI8 760 aa20.73■□□□□ 0.91
COL9A1-204ENST00000370496 NINLQ9Y2I6 1382 aa20.73■□□□□ 0.91
COL9A1-204ENST00000370496 USP6P35125 1406 aa20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms