RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 FKBP5Q13451 457 aaPredicted RBP19.29■□□□□ 0.68
COL17A1-202ENST00000369733 TPD52L1Q16890 204 aaPredicted RBP19.29■□□□□ 0.68
COL17A1-202ENST00000369733 SKAP1Q86WV1 359 aa19.29■□□□□ 0.68
COL17A1-202ENST00000369733 NECTIN2Q92692 538 aa19.29■□□□□ 0.68
COL17A1-202ENST00000369733 EHBP1L1Q8N3D4 1523 aa19.29■□□□□ 0.68
COL17A1-202ENST00000369733 K7ELQ4 463 aaPredicted RBP19.28■□□□□ 0.68
COL17A1-202ENST00000369733 LETM1O95202 739 aaPredicted RBP19.28■□□□□ 0.68
COL17A1-202ENST00000369733 GCC1Q96CN9 775 aa19.28■□□□□ 0.68
COL17A1-202ENST00000369733 GGNBP2Q9H3C7 697 aa19.28■□□□□ 0.68
COL17A1-202ENST00000369733 PTPRGP23470 1445 aa19.28■□□□□ 0.68
COL17A1-202ENST00000369733 RNF20Q5VTR2 975 aa19.28■□□□□ 0.68
COL17A1-202ENST00000369733 HMGN5P82970 282 aaKnown RBP19.28■□□□□ 0.68
COL17A1-202ENST00000369733 TOMM22Q9NS69 142 aa19.28■□□□□ 0.68
COL17A1-202ENST00000369733 NEK4P51957 841 aa19.27■□□□□ 0.68
COL17A1-202ENST00000369733 PODXL2Q9NZ53 605 aa19.27■□□□□ 0.68
COL17A1-202ENST00000369733 NOB1Q9ULX3 412 aaKnown RBP19.27■□□□□ 0.68
COL17A1-202ENST00000369733 PRDM2Q13029 1718 aa19.27■□□□□ 0.68
COL17A1-202ENST00000369733 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.27■□□□□ 0.68
COL17A1-202ENST00000369733 C11orf95C9JLR9 678 aaPredicted RBP19.27■□□□□ 0.68
COL17A1-202ENST00000369733 SETQ01105 290 aaPredicted RBP19.27■□□□□ 0.67
COL17A1-202ENST00000369733 BCL11BQ9C0K0 894 aaPredicted RBP19.26■□□□□ 0.67
COL17A1-202ENST00000369733 EFCAB5A4FU69 1503 aa19.26■□□□□ 0.67
COL17A1-202ENST00000369733 PES1O00541 588 aaKnown RBP19.26■□□□□ 0.67
COL17A1-202ENST00000369733 TPM1P09493 284 aa19.26■□□□□ 0.67
COL17A1-202ENST00000369733 EIF2S2P20042 333 aaKnown RBP19.26■□□□□ 0.67
COL17A1-202ENST00000369733 C1orf115Q9H7X2 142 aa19.26■□□□□ 0.67
COL17A1-202ENST00000369733 C9orf78Q9NZ63 289 aaPredicted RBP19.26■□□□□ 0.67
COL17A1-202ENST00000369733 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.26■□□□□ 0.67
COL17A1-202ENST00000369733 MVPQ14764 893 aaKnown RBP19.25■□□□□ 0.67
COL17A1-202ENST00000369733 ARGLU1Q9NWB6 273 aaPredicted RBP19.25■□□□□ 0.67
COL17A1-202ENST00000369733 TSR2Q969E8 191 aaKnown RBP19.25■□□□□ 0.67
COL17A1-202ENST00000369733 FBXW7Q969H0 707 aa19.25■□□□□ 0.67
COL17A1-202ENST00000369733 TSR1Q2NL82 804 aaKnown RBP19.25■□□□□ 0.67
COL17A1-202ENST00000369733 CWC22Q9HCG8 908 aaKnown RBP19.25■□□□□ 0.67
COL17A1-202ENST00000369733 CIZ1Q9ULV3 898 aaPredicted RBP19.25■□□□□ 0.67
COL17A1-202ENST00000369733 CLSTN1O94985 981 aa19.24■□□□□ 0.67
COL17A1-202ENST00000369733 MCM2P49736 904 aa19.24■□□□□ 0.67
COL17A1-202ENST00000369733 NAIPQ13075 1403 aa19.24■□□□□ 0.67
COL17A1-202ENST00000369733 CCDC73Q6ZRK6 1079 aa19.24■□□□□ 0.67
COL17A1-202ENST00000369733 TOP2BQ02880 1626 aa19.23■□□□□ 0.67
COL17A1-202ENST00000369733 UQCRHLA0A096LP55 91 aa19.23■□□□□ 0.67
COL17A1-202ENST00000369733 UQCRHP07919 91 aa19.23■□□□□ 0.67
COL17A1-202ENST00000369733 CCDC27Q2M243 656 aa19.23■□□□□ 0.67
COL17A1-202ENST00000369733 MNS1Q8NEH6 495 aa19.23■□□□□ 0.67
COL17A1-202ENST00000369733 SLFN5Q08AF3 891 aa19.23■□□□□ 0.67
COL17A1-202ENST00000369733 C20orf194Q5TEA3 1177 aa19.23■□□□□ 0.67
COL17A1-202ENST00000369733 ERBINQ96RT1 1412 aa19.22■□□□□ 0.67
COL17A1-202ENST00000369733 WDR63Q8IWG1 891 aa19.22■□□□□ 0.67
COL17A1-202ENST00000369733 CABP2Q9NPB3 220 aa19.22■□□□□ 0.67
COL17A1-202ENST00000369733 SCAPERQ9BY12 1400 aa19.22■□□□□ 0.67
COL17A1-202ENST00000369733 TSPYL4Q9UJ04 414 aa19.22■□□□□ 0.67
COL17A1-202ENST00000369733 ERC2O15083 957 aa19.21■□□□□ 0.67
COL17A1-202ENST00000369733 TRIM5Q9C035 493 aa19.21■□□□□ 0.67
COL17A1-202ENST00000369733 HSP90AB4PQ58FF6 505 aa19.2■□□□□ 0.66
COL17A1-202ENST00000369733 TEFQ10587 303 aa19.2■□□□□ 0.66
COL17A1-202ENST00000369733 CCDC70Q6NSX1 233 aa19.2■□□□□ 0.66
COL17A1-202ENST00000369733 CFAP70Q5T0N1 1121 aa19.19■□□□□ 0.66
COL17A1-202ENST00000369733 FOSBP53539 338 aa19.19■□□□□ 0.66
COL17A1-202ENST00000369733 CPLX2Q6PUV4 134 aaKnown RBP19.19■□□□□ 0.66
COL17A1-202ENST00000369733 CHD1LQ86WJ1 897 aa19.19■□□□□ 0.66
COL17A1-202ENST00000369733 CPLX1O14810 134 aa19.19■□□□□ 0.66
COL17A1-202ENST00000369733 ATF7IPQ6VMQ6 1270 aa19.19■□□□□ 0.66
COL17A1-202ENST00000369733 CT47B1P0C2W7 299 aaPredicted RBP19.18■□□□□ 0.66
COL17A1-202ENST00000369733 G3BP1Q13283 466 aaKnown RBP eCLIP19.18■□□□□ 0.66
COL17A1-202ENST00000369733 ZSCAN30Q86W11 494 aa19.18■□□□□ 0.66
COL17A1-202ENST00000369733 NEXNQ0ZGT2 675 aa19.18■□□□□ 0.66
COL17A1-202ENST00000369733 TRIM29Q14134 588 aa19.18■□□□□ 0.66
COL17A1-202ENST00000369733 FIBPO43427 364 aa19.17■□□□□ 0.66
COL17A1-202ENST00000369733 TMEM132EQ6IEE7 984 aa19.17■□□□□ 0.66
COL17A1-202ENST00000369733 C1orf141Q5JVX7 400 aa19.17■□□□□ 0.66
COL17A1-202ENST00000369733 SPC24Q8NBT2 197 aa19.17■□□□□ 0.66
COL17A1-202ENST00000369733 MPNDQ8N594 471 aa19.17■□□□□ 0.66
COL17A1-202ENST00000369733 NAT10Q9H0A0 1025 aaKnown RBP19.17■□□□□ 0.66
COL17A1-202ENST00000369733 DAPK1P53355 1430 aa19.16■□□□□ 0.66
COL17A1-202ENST00000369733 CCDC66A2RUB6 948 aa19.16■□□□□ 0.66
COL17A1-202ENST00000369733 CNTROBQ8N137 903 aa19.16■□□□□ 0.66
COL17A1-202ENST00000369733 EID1Q9Y6B2 187 aa19.16■□□□□ 0.66
COL17A1-202ENST00000369733 TWISTNBQ3B726 338 aaPredicted RBP19.16■□□□□ 0.66
COL17A1-202ENST00000369733 UBTFL1P0CB47 393 aaPredicted RBP19.15■□□□□ 0.66
COL17A1-202ENST00000369733 AKAP17AQ02040 695 aaKnown RBP19.15■□□□□ 0.66
COL17A1-202ENST00000369733 LRRFIP1Q32MZ4 808 aaKnown RBP19.15■□□□□ 0.66
COL17A1-202ENST00000369733 SYNE3Q6ZMZ3 975 aa19.15■□□□□ 0.66
COL17A1-202ENST00000369733 NCOA1Q15788 1441 aa19.15■□□□□ 0.66
COL17A1-202ENST00000369733 PRKAR2BP31323 418 aa19.15■□□□□ 0.66
COL17A1-202ENST00000369733 HOOK1Q9UJC3 728 aaKnown RBP19.15■□□□□ 0.66
COL17A1-202ENST00000369733 SUPT6HQ7KZ85 1726 aaKnown RBP19.15■□□□□ 0.66
COL17A1-202ENST00000369733 PSMA5P28066 241 aa19.14■□□□□ 0.65
COL17A1-202ENST00000369733 C9orf84Q5VXU9 1444 aa19.13■□□□□ 0.65
COL17A1-202ENST00000369733 WWC1Q8IX03 1113 aa19.13■□□□□ 0.65
COL17A1-202ENST00000369733 PLEKHH2Q8IVE3 1493 aa19.12■□□□□ 0.65
COL17A1-202ENST00000369733 IPO7O95373 1038 aaKnown RBP19.12■□□□□ 0.65
COL17A1-202ENST00000369733 SDF4Q9BRK5 362 aa19.12■□□□□ 0.65
COL17A1-202ENST00000369733 WDR33Q9C0J8 1336 aaKnown RBP19.12■□□□□ 0.65
COL17A1-202ENST00000369733 GNAI3P08754 354 aa19.12■□□□□ 0.65
COL17A1-202ENST00000369733 TBC1D2Q9BYX2 928 aa19.12■□□□□ 0.65
COL17A1-202ENST00000369733 NOM1Q5C9Z4 860 aaKnown RBP19.11■□□□□ 0.65
COL17A1-202ENST00000369733 ANKRD20A12PQ8NF67 263 aa19.11■□□□□ 0.65
COL17A1-202ENST00000369733 SLC12A5Q9H2X9 1139 aa19.11■□□□□ 0.65
COL17A1-202ENST00000369733 CCDC192P0DO97 292 aa19.11■□□□□ 0.65
COL17A1-202ENST00000369733 DDX58O95786 925 aaKnown RBP19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms