RNA–Protein interactions for RNA: ENST00000368671.3

CLRN3-201, Transcript of clarin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLRN3, Length 1,152 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3-201ENST00000368671 ADGRL3Q9HAR2 1447 aa15.6■□□□□ 0.09
CLRN3-201ENST00000368671 NUTM2BA6NNL0 878 aaPredicted RBP15.59■□□□□ 0.09
CLRN3-201ENST00000368671 NUTM2EB1AL46 878 aaPredicted RBP15.59■□□□□ 0.09
CLRN3-201ENST00000368671 NUTM2AQ8IVF1 878 aaPredicted RBP15.59■□□□□ 0.09
CLRN3-201ENST00000368671 PPLO60437 1756 aa15.58■□□□□ 0.08
CLRN3-201ENST00000368671 ZNF772Q68DY9 489 aaPredicted RBP15.57■□□□□ 0.08
CLRN3-201ENST00000368671 VGFO15240 615 aaPredicted RBP15.56■□□□□ 0.08
CLRN3-201ENST00000368671 DDX17Q92841 729 aaKnown RBP15.56■□□□□ 0.08
CLRN3-201ENST00000368671 SETD5Q9C0A6 1442 aa15.56■□□□□ 0.08
CLRN3-201ENST00000368671 PTCH1Q13635 1447 aa15.54■□□□□ 0.08
CLRN3-201ENST00000368671 ROBO2Q9HCK4 1378 aa15.53■□□□□ 0.08
CLRN3-201ENST00000368671 RPGRIP1LQ68CZ1 1315 aa15.53■□□□□ 0.08
CLRN3-201ENST00000368671 LRRC59Q96AG4 307 aaKnown RBP15.53■□□□□ 0.08
CLRN3-201ENST00000368671 C1orf167Q5SNV9 1468 aa15.52■□□□□ 0.08
CLRN3-201ENST00000368671 MKRN4PQ13434 485 aaPredicted RBP15.51■□□□□ 0.07
CLRN3-201ENST00000368671 PNPLA6Q8IY17 1366 aa15.5■□□□□ 0.07
CLRN3-201ENST00000368671 AFF2P51816 1311 aa15.5■□□□□ 0.07
CLRN3-201ENST00000368671 RXRBP28702 533 aa15.5■□□□□ 0.07
CLRN3-201ENST00000368671 LAMC1P11047 1609 aa15.49■□□□□ 0.07
CLRN3-201ENST00000368671 IFT172Q9UG01 1749 aa15.48■□□□□ 0.07
CLRN3-201ENST00000368671 C8orf37Q96NL8 207 aa15.48■□□□□ 0.07
CLRN3-201ENST00000368671 ORAI2Q96SN7 254 aa15.48■□□□□ 0.07
CLRN3-201ENST00000368671 CCDC144AA2RUR9 1427 aa15.48■□□□□ 0.07
CLRN3-201ENST00000368671 PRAG1Q86YV5 1406 aa15.48■□□□□ 0.07
CLRN3-201ENST00000368671 RGL3Q3MIN7 710 aa15.46■□□□□ 0.07
CLRN3-201ENST00000368671 ADGRF5Q8IZF2 1346 aa15.45■□□□□ 0.06
CLRN3-201ENST00000368671 ADAMTS2O95450 1211 aa15.45■□□□□ 0.06
CLRN3-201ENST00000368671 UPF1Q92900 1129 aaKnown RBP eCLIP15.45■□□□□ 0.06
CLRN3-201ENST00000368671 CDC42BPGQ6DT37 1551 aa15.45■□□□□ 0.06
CLRN3-201ENST00000368671 MPHOSPH9Q99550 1183 aa15.44■□□□□ 0.06
CLRN3-201ENST00000368671 CDK12Q9NYV4 1490 aaPredicted RBP15.44■□□□□ 0.06
CLRN3-201ENST00000368671 SOS2Q07890 1332 aaPredicted RBP15.43■□□□□ 0.06
CLRN3-201ENST00000368671 STK26Q9P289 416 aa15.43■□□□□ 0.06
CLRN3-201ENST00000368671 KNDC1Q76NI1 1749 aa15.43■□□□□ 0.06
CLRN3-201ENST00000368671 SPATA31E1Q6ZUB1 1445 aa15.43■□□□□ 0.06
CLRN3-201ENST00000368671 NGLY1Q96IV0 654 aa15.42■□□□□ 0.06
CLRN3-201ENST00000368671 RBM42Q9BTD8 480 aaKnown RBP15.42■□□□□ 0.06
CLRN3-201ENST00000368671 QTRT2Q9H974 415 aaKnown RBP15.42■□□□□ 0.06
CLRN3-201ENST00000368671 RGS12O14924 1447 aa15.42■□□□□ 0.06
CLRN3-201ENST00000368671 ESCO1Q5FWF5 840 aa15.41■□□□□ 0.06
CLRN3-201ENST00000368671 COL22A1Q8NFW1 1626 aaPredicted RBP15.41■□□□□ 0.06
CLRN3-201ENST00000368671 ANKRD30BQ9BXX2 1392 aa15.4■□□□□ 0.06
CLRN3-201ENST00000368671 NUTM2FA1L443 756 aa15.4■□□□□ 0.06
CLRN3-201ENST00000368671 RBM6P78332 1123 aaKnown RBP15.4■□□□□ 0.06
CLRN3-201ENST00000368671 WAPLQ7Z5K2 1190 aa15.4■□□□□ 0.06
CLRN3-201ENST00000368671 LRPPRCP42704 1394 aaKnown RBP15.39■□□□□ 0.05
CLRN3-201ENST00000368671 TMEM132EQ6IEE7 984 aa15.39■□□□□ 0.05
CLRN3-201ENST00000368671 TECPR2O15040 1411 aa15.39■□□□□ 0.05
CLRN3-201ENST00000368671 PLEKHH1Q9ULM0 1364 aa15.38■□□□□ 0.05
CLRN3-201ENST00000368671 FMN2Q9NZ56 1722 aa15.38■□□□□ 0.05
CLRN3-201ENST00000368671 PIK3C2GO75747 1445 aa15.38■□□□□ 0.05
CLRN3-201ENST00000368671 XPCQ01831 940 aaPredicted RBP15.38■□□□□ 0.05
CLRN3-201ENST00000368671 PXDNQ92626 1479 aa15.38■□□□□ 0.05
CLRN3-201ENST00000368671 NPHP3Q7Z494 1330 aa15.38■□□□□ 0.05
CLRN3-201ENST00000368671 MARF1Q9Y4F3 1742 aaKnown RBP15.37■□□□□ 0.05
CLRN3-201ENST00000368671 USP21Q9UK80 565 aa15.37■□□□□ 0.05
CLRN3-201ENST00000368671 FOXO3O43524 673 aa15.36■□□□□ 0.05
CLRN3-201ENST00000368671 ABCC11Q96J66 1382 aa15.36■□□□□ 0.05
CLRN3-201ENST00000368671 YTHDC2Q9H6S0 1430 aaKnown RBP15.35■□□□□ 0.05
CLRN3-201ENST00000368671 MYOM2P54296 1465 aa15.35■□□□□ 0.05
CLRN3-201ENST00000368671 KIF1AQ12756 1690 aa15.35■□□□□ 0.05
CLRN3-201ENST00000368671 RGPD8O14715 1765 aaPredicted RBP15.34■□□□□ 0.05
CLRN3-201ENST00000368671 TRPC5Q9UL62 973 aaPredicted RBP15.33■□□□□ 0.04
CLRN3-201ENST00000368671 FNBP4Q8N3X1 1017 aaPredicted RBP15.32■□□□□ 0.04
CLRN3-201ENST00000368671 CFAP70Q5T0N1 1121 aa15.31■□□□□ 0.04
CLRN3-201ENST00000368671 ATRNO75882 1429 aa15.31■□□□□ 0.04
CLRN3-201ENST00000368671 DHX57Q6P158 1386 aaKnown RBP15.3■□□□□ 0.04
CLRN3-201ENST00000368671 C14orf93Q9H972 538 aaKnown RBP15.3■□□□□ 0.04
CLRN3-201ENST00000368671 ACIN1Q9UKV3 1341 aaKnown RBP15.3■□□□□ 0.04
CLRN3-201ENST00000368671 NRXN1Q9ULB1 1477 aa15.3■□□□□ 0.04
CLRN3-201ENST00000368671 RAB3GAP2Q9H2M9 1393 aa15.29■□□□□ 0.04
CLRN3-201ENST00000368671 ATAD2Q6PL18 1390 aa15.28■□□□□ 0.04
CLRN3-201ENST00000368671 SAFB2Q14151 953 aaKnown RBP eCLIP15.28■□□□□ 0.04
CLRN3-201ENST00000368671 BCL9LQ86UU0 1499 aa15.27■□□□□ 0.04
CLRN3-201ENST00000368671 SPATA31A3Q5VYP0 1347 aa15.27■□□□□ 0.04
CLRN3-201ENST00000368671 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.27■□□□□ 0.04
CLRN3-201ENST00000368671 KRT28Q7Z3Y7 464 aa15.27■□□□□ 0.04
CLRN3-201ENST00000368671 SIRT1Q96EB6 747 aa15.27■□□□□ 0.04
CLRN3-201ENST00000368671 USP32Q8NFA0 1604 aa15.26■□□□□ 0.03
CLRN3-201ENST00000368671 SPDYE2BA6NHP3 402 aa15.26■□□□□ 0.03
CLRN3-201ENST00000368671 PLEKHG5O94827 1062 aa15.26■□□□□ 0.03
CLRN3-201ENST00000368671 SPDYE6P0CI01 402 aa15.26■□□□□ 0.03
CLRN3-201ENST00000368671 SPDYE2Q495Y8 402 aa15.26■□□□□ 0.03
CLRN3-201ENST00000368671 PRAM1Q96QH2 718 aa15.26■□□□□ 0.03
CLRN3-201ENST00000368671 PHF8Q9UPP1 1060 aa15.25■□□□□ 0.03
CLRN3-201ENST00000368671 DLC1Q96QB1 1528 aa15.24■□□□□ 0.03
CLRN3-201ENST00000368671 HAP1P54257 671 aaPredicted RBP15.24■□□□□ 0.03
CLRN3-201ENST00000368671 POGKQ9P215 609 aa15.24■□□□□ 0.03
CLRN3-201ENST00000368671 TNS3Q68CZ2 1445 aa15.24■□□□□ 0.03
CLRN3-201ENST00000368671 ABCA3Q99758 1704 aa15.23■□□□□ 0.03
CLRN3-201ENST00000368671 PSME1Q06323 249 aa15.23■□□□□ 0.03
CLRN3-201ENST00000368671 GJD4Q96KN9 370 aaPredicted RBP15.23■□□□□ 0.03
CLRN3-201ENST00000368671 SLIT2O94813 1529 aa15.22■□□□□ 0.03
CLRN3-201ENST00000368671 PLCH1Q4KWH8 1693 aa15.22■□□□□ 0.03
CLRN3-201ENST00000368671 LMOD2Q6P5Q4 547 aa15.22■□□□□ 0.03
CLRN3-201ENST00000368671 KDM2AQ9Y2K7 1162 aa15.22■□□□□ 0.03
CLRN3-201ENST00000368671 ADGRB1O14514 1584 aa15.22■□□□□ 0.03
CLRN3-201ENST00000368671 ADGRB2O60241 1585 aa15.22■□□□□ 0.03
CLRN3-201ENST00000368671 GLI3P10071 1580 aa15.22■□□□□ 0.03
CLRN3-201ENST00000368671 UNC5CLQ8IV45 518 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms