RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 ATF3P18847 181 aa21.66■■□□□ 1.06
SMPDL3A-201ENST00000368440 CADPS2Q86UW7 1296 aa21.66■■□□□ 1.06
SMPDL3A-201ENST00000368440 CDC42BPGQ6DT37 1551 aa21.66■■□□□ 1.06
SMPDL3A-201ENST00000368440 SIRT1Q96EB6 747 aa21.65■■□□□ 1.06
SMPDL3A-201ENST00000368440 PRAM1Q96QH2 718 aa21.65■■□□□ 1.06
SMPDL3A-201ENST00000368440 MST1RQ04912 1400 aa21.65■■□□□ 1.06
SMPDL3A-201ENST00000368440 SLAIN2Q9P270 581 aa21.64■■□□□ 1.06
SMPDL3A-201ENST00000368440 SAFB2Q14151 953 aaKnown RBP eCLIP21.64■■□□□ 1.05
SMPDL3A-201ENST00000368440 FMN2Q9NZ56 1722 aa21.61■■□□□ 1.05
SMPDL3A-201ENST00000368440 POGKQ9P215 609 aa21.6■■□□□ 1.05
SMPDL3A-201ENST00000368440 ROCK2O75116 1388 aaKnown RBP21.6■■□□□ 1.05
SMPDL3A-201ENST00000368440 ADGRB2O60241 1585 aa21.6■■□□□ 1.05
SMPDL3A-201ENST00000368440 HSPA1LP34931 641 aa21.59■■□□□ 1.05
SMPDL3A-201ENST00000368440 RALGAPBQ86X10 1494 aa21.59■■□□□ 1.05
SMPDL3A-201ENST00000368440 C1orf167Q5SNV9 1468 aa21.58■■□□□ 1.04
SMPDL3A-201ENST00000368440 GPRASP1Q5JY77 1395 aa21.56■■□□□ 1.04
SMPDL3A-201ENST00000368440 RGPD8O14715 1765 aaPredicted RBP21.56■■□□□ 1.04
SMPDL3A-201ENST00000368440 MINK1Q8N4C8 1332 aaPredicted RBP21.55■■□□□ 1.04
SMPDL3A-201ENST00000368440 QRICH2Q9H0J4 1663 aa21.55■■□□□ 1.04
SMPDL3A-201ENST00000368440 PHLPP1O60346 1717 aa21.55■■□□□ 1.04
SMPDL3A-201ENST00000368440 BRINP3Q76B58 766 aa21.55■■□□□ 1.04
SMPDL3A-201ENST00000368440 HIRIP3Q9BW71 556 aaPredicted RBP21.55■■□□□ 1.04
SMPDL3A-201ENST00000368440 NUTM2FA1L443 756 aa21.54■■□□□ 1.04
SMPDL3A-201ENST00000368440 NHSL1Q5SYE7 1610 aa21.53■■□□□ 1.04
SMPDL3A-201ENST00000368440 USP32Q8NFA0 1604 aa21.53■■□□□ 1.04
SMPDL3A-201ENST00000368440 AHDC1Q5TGY3 1603 aaPredicted RBP21.52■■□□□ 1.04
SMPDL3A-201ENST00000368440 TIMELESSQ9UNS1 1208 aa21.52■■□□□ 1.03
SMPDL3A-201ENST00000368440 ORAI2Q96SN7 254 aa21.51■■□□□ 1.03
SMPDL3A-201ENST00000368440 COL16A1Q07092 1604 aaPredicted RBP21.51■■□□□ 1.03
SMPDL3A-201ENST00000368440 CENPJQ9HC77 1338 aaPredicted RBP21.5■■□□□ 1.03
SMPDL3A-201ENST00000368440 CARD11Q9BXL7 1154 aa21.49■■□□□ 1.03
SMPDL3A-201ENST00000368440 DDX17Q92841 729 aaKnown RBP21.47■■□□□ 1.03
SMPDL3A-201ENST00000368440 TULP4Q9NRJ4 1543 aa21.46■■□□□ 1.03
SMPDL3A-201ENST00000368440 WASLO00401 505 aaPredicted RBP21.45■■□□□ 1.02
SMPDL3A-201ENST00000368440 ESCO1Q5FWF5 840 aa21.45■■□□□ 1.02
SMPDL3A-201ENST00000368440 KIF1AQ12756 1690 aa21.44■■□□□ 1.02
SMPDL3A-201ENST00000368440 EIF3AQ14152 1382 aaKnown RBP21.44■■□□□ 1.02
SMPDL3A-201ENST00000368440 PRR36Q9H6K5 1346 aa21.44■■□□□ 1.02
SMPDL3A-201ENST00000368440 ANKARQ7Z5J8 1434 aa21.43■■□□□ 1.02
SMPDL3A-201ENST00000368440 ATP7BP35670 1465 aa21.42■■□□□ 1.02
SMPDL3A-201ENST00000368440 ITSN1Q15811 1721 aa21.42■■□□□ 1.02
SMPDL3A-201ENST00000368440 TOPAZ1Q8N9V7 1692 aa21.41■■□□□ 1.02
SMPDL3A-201ENST00000368440 CDK19Q9BWU1 502 aa21.4■■□□□ 1.02
SMPDL3A-201ENST00000368440 PXDNQ92626 1479 aa21.38■■□□□ 1.01
SMPDL3A-201ENST00000368440 SHPRHQ149N8 1683 aa21.38■■□□□ 1.01
SMPDL3A-201ENST00000368440 PHF8Q9UPP1 1060 aa21.37■■□□□ 1.01
SMPDL3A-201ENST00000368440 FOXO3O43524 673 aa21.37■■□□□ 1.01
SMPDL3A-201ENST00000368440 XPCQ01831 940 aaPredicted RBP21.35■■□□□ 1.01
SMPDL3A-201ENST00000368440 PMFBP1Q8TBY8 1022 aa21.35■■□□□ 1.01
SMPDL3A-201ENST00000368440 NUDT16Q96DE0 195 aaKnown RBP21.35■■□□□ 1.01
SMPDL3A-201ENST00000368440 SOS2Q07890 1332 aaPredicted RBP21.35■■□□□ 1.01
SMPDL3A-201ENST00000368440 CABP2Q9NPB3 220 aa21.35■■□□□ 1.01
SMPDL3A-201ENST00000368440 NPHP3Q7Z494 1330 aa21.34■■□□□ 1.01
SMPDL3A-201ENST00000368440 USP47Q96K76 1375 aa21.34■■□□□ 1.01
SMPDL3A-201ENST00000368440 SBNO2Q9Y2G9 1366 aa21.34■■□□□ 1.01
SMPDL3A-201ENST00000368440 JCADQ9P266 1359 aa21.34■■□□□ 1.01
SMPDL3A-201ENST00000368440 MED1Q15648 1581 aaPredicted RBP21.34■■□□□ 1.01
SMPDL3A-201ENST00000368440 SRPK2P78362 688 aaKnown RBP21.33■■□□□ 1.01
SMPDL3A-201ENST00000368440 ST20-MTHFSA0A0A6YYL1 179 aa21.32■■□□□ 1
SMPDL3A-201ENST00000368440 EVC2Q86UK5 1308 aa21.32■■□□□ 1
SMPDL3A-201ENST00000368440 TRPM3Q9HCF6 1732 aaPredicted RBP21.3■■□□□ 1
SMPDL3A-201ENST00000368440 LRRC59Q96AG4 307 aaKnown RBP21.3■■□□□ 1
SMPDL3A-201ENST00000368440 PNPLA6Q8IY17 1366 aa21.29■■□□□ 1
SMPDL3A-201ENST00000368440 TESK2Q96S53 571 aa21.29■■□□□ 1
SMPDL3A-201ENST00000368440 PPIP5K1Q6PFW1 1433 aa21.28■■□□□ 1
SMPDL3A-201ENST00000368440 KRT28Q7Z3Y7 464 aa21.28■■□□□ 1
SMPDL3A-201ENST00000368440 CCDC61Q9Y6R9 512 aa21.28■■□□□ 1
SMPDL3A-201ENST00000368440 LRP6O75581 1613 aa21.27■■□□□ 1
SMPDL3A-201ENST00000368440 COL22A1Q8NFW1 1626 aaPredicted RBP21.27■■□□□ 1
SMPDL3A-201ENST00000368440 NGDNQ8NEJ9 315 aaKnown RBP21.25■□□□□ 0.99
SMPDL3A-201ENST00000368440 PSME1Q06323 249 aa21.24■□□□□ 0.99
SMPDL3A-201ENST00000368440 POLR3AO14802 1390 aaPredicted RBP21.24■□□□□ 0.99
SMPDL3A-201ENST00000368440 ALS2Q96Q42 1657 aa21.24■□□□□ 0.99
SMPDL3A-201ENST00000368440 PLEKHG3A1L390 1219 aa21.24■□□□□ 0.99
SMPDL3A-201ENST00000368440 TNS3Q68CZ2 1445 aa21.23■□□□□ 0.99
SMPDL3A-201ENST00000368440 ACEP12821 1306 aa21.23■□□□□ 0.99
SMPDL3A-201ENST00000368440 SPATA31A3Q5VYP0 1347 aa21.23■□□□□ 0.99
SMPDL3A-201ENST00000368440 DISP3Q9P2K9 1392 aa21.22■□□□□ 0.99
SMPDL3A-201ENST00000368440 CABP1Q9NZU7 370 aa21.22■□□□□ 0.99
SMPDL3A-201ENST00000368440 SPATA31A6Q5VVP1 1343 aa21.22■□□□□ 0.99
SMPDL3A-201ENST00000368440 AKAP12Q02952 1782 aa21.22■□□□□ 0.99
SMPDL3A-201ENST00000368440 SBNO1A3KN83 1393 aa21.21■□□□□ 0.99
SMPDL3A-201ENST00000368440 ATAD2Q6PL18 1390 aa21.21■□□□□ 0.99
SMPDL3A-201ENST00000368440 NUTM2BA6NNL0 878 aaPredicted RBP21.2■□□□□ 0.98
SMPDL3A-201ENST00000368440 NUTM2EB1AL46 878 aaPredicted RBP21.2■□□□□ 0.98
SMPDL3A-201ENST00000368440 NUTM2AQ8IVF1 878 aaPredicted RBP21.2■□□□□ 0.98
SMPDL3A-201ENST00000368440 ABCA3Q99758 1704 aa21.2■□□□□ 0.98
SMPDL3A-201ENST00000368440 HSPA5P11021 654 aaKnown RBP21.18■□□□□ 0.98
SMPDL3A-201ENST00000368440 EIF4G2P78344 907 aaKnown RBP eCLIP21.16■□□□□ 0.98
SMPDL3A-201ENST00000368440 LMOD2Q6P5Q4 547 aa21.16■□□□□ 0.98
SMPDL3A-201ENST00000368440 MON2Q7Z3U7 1717 aa21.16■□□□□ 0.98
SMPDL3A-201ENST00000368440 CRYBG1Q9Y4K1 1723 aa21.16■□□□□ 0.98
SMPDL3A-201ENST00000368440 NRKQ7Z2Y5 1582 aa21.15■□□□□ 0.98
SMPDL3A-201ENST00000368440 MARF1Q9Y4F3 1742 aaKnown RBP21.15■□□□□ 0.98
SMPDL3A-201ENST00000368440 CD163L1Q9NR16 1453 aa21.15■□□□□ 0.98
SMPDL3A-201ENST00000368440 USP6P35125 1406 aa21.15■□□□□ 0.98
SMPDL3A-201ENST00000368440 PAK3O75914 559 aaPredicted RBP21.15■□□□□ 0.98
SMPDL3A-201ENST00000368440 TMF1P82094 1093 aa21.15■□□□□ 0.98
SMPDL3A-201ENST00000368440 CPSF1Q10570 1443 aaKnown RBP21.14■□□□□ 0.97
SMPDL3A-201ENST00000368440 ARHGEF10O15013 1369 aa21.14■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms